GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000127-TA|BGIBMGA000127-PA|IPR002478|PUA
         (180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637    175   2e-44
07_03_1408 - 26353389-26355191                                         31   0.71 
03_03_0094 + 14378953-14380728                                         30   0.93 
12_01_0251 - 1858815-1860209                                           28   5.0  

>07_03_1638 + 28299063-28299625,28301055-28301100,28301596-28301637
          Length = 216

 Score =  175 bits (426), Expect = 2e-44
 Identities = 85/187 (45%), Positives = 119/187 (63%), Gaps = 8/187 (4%)

Query: 1   MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPD--------GTYCFREKKDRVYYISEKLL 52
           M+ L E  T+++FEKL K+ G N+K L++RP         G YC R  K+RVYY SE L+
Sbjct: 1   MRALDEKETKMVFEKLFKFTGPNLKHLLERPAVEGPDPQAGRYCLRLHKNRVYYASEALV 60

Query: 53  HLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHH 112
             A  V    L   GT  GKFT    F L + AL  ++ +A  +VW+KP  E+ FL+G+ 
Sbjct: 61  RRATAVARPRLAGVGTPIGKFTHGGAFHLTVHALDLLAAHARRRVWLKPDTERSFLFGNS 120

Query: 113 IIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEY 172
           + KS L RITENT  + GVVV++M+D+P+GFG+A+R+  +CR AD  A +V HQ+D GEY
Sbjct: 121 VPKSSLARITENTKANDGVVVMSMADVPLGFGIAARSAQDCRKADTNAVVVLHQSDAGEY 180

Query: 173 IRSEDTL 179
           +R E+ L
Sbjct: 181 LRREEEL 187


>07_03_1408 - 26353389-26355191
          Length = 600

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 99  VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTA 151
           VK SA     YG  ++  GL R   +    + VV++T     I  G+A  TTA
Sbjct: 315 VKDSAVNAICYGAKLMIPGLLRFENDIDVGEEVVLMTTKGEAIAIGIAEMTTA 367


>03_03_0094 + 14378953-14380728
          Length = 591

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 99  VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTA 151
           VK SA     YG  ++  GL R        + VV++T     I  G+A  TTA
Sbjct: 319 VKDSAVNAICYGAKLMIPGLLRFENEIEVGEEVVLMTTKGEAIAIGIAEMTTA 371


>12_01_0251 - 1858815-1860209
          Length = 464

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 25/107 (23%), Positives = 39/107 (36%)

Query: 25  KLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHIT 84
           +LL    D  Y  R           +L  +A +  P +    G+   K    + +R   T
Sbjct: 200 RLLAADDDAMYSSRSAHLNQMASIAQLQQMAVSSCPPSTGGGGSVQYKDDDDDPYRSPAT 259

Query: 85  ALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGV 131
            LT++SP A       P+A   FL     +   +  + E    H GV
Sbjct: 260 PLTFVSPPASTPHLQMPAALANFLSAVRALSPKIVVVAEQDADHNGV 306


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,965,654
Number of Sequences: 37544
Number of extensions: 189858
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 4
length of query: 180
length of database: 14,793,348
effective HSP length: 78
effective length of query: 102
effective length of database: 11,864,916
effective search space: 1210221432
effective search space used: 1210221432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)