GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000127-TA|BGIBMGA000127-PA|IPR002478|PUA
         (180 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.)              251   3e-67
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)                 31   0.41 
SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.96 
SB_13692| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_13691| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)               29   2.2  
SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32)                 27   8.9  

>SB_6282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score =  251 bits (614), Expect = 3e-67
 Identities = 110/170 (64%), Positives = 137/170 (80%)

Query: 11  ILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCF 70
           ++ E   + IG N+KLLIDRPDG YCFR  KDRVYY+SE ++  A  V  DNL+S GTC 
Sbjct: 31  VVLEVPFQCIGENIKLLIDRPDGNYCFRLHKDRVYYVSELIMRRATNVARDNLISLGTCL 90

Query: 71  GKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQG 130
           GKFTK+ KF+LHITAL +++PYA +KVWVKP AEQ FLYG+H+ KSGLGRITENTP++QG
Sbjct: 91  GKFTKSEKFKLHITALDFLAPYAKYKVWVKPGAEQTFLYGNHVTKSGLGRITENTPQYQG 150

Query: 131 VVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEYIRSEDTLT 180
           VV+ +MSD P+GFG  +R+T +CR A+P   +VFHQADVGEY+RSEDTLT
Sbjct: 151 VVIYSMSDSPLGFGATARSTQDCRKANPTDVVVFHQADVGEYLRSEDTLT 200


>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
          Length = 1597

 Score = 31.5 bits (68), Expect = 0.41
 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 20/180 (11%)

Query: 5   SEDRTRILFEKLTKYIGVNVKL-----LIDRPDGTYC-FREKKDRVYYISEKLLHLAQTV 58
           S D  + L E L++     V+L     +   P+ TY   R  KD ++ + EK+  + ++ 
Sbjct: 762 SADHLKSLTEVLSRLDKAGVRLKRSKCIFQAPEVTYLGHRIDKDGIHPLDEKIKAIQESP 821

Query: 59  KPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGH---HIIK 115
           +P NL       G     N +  +I  +T I   +PF   +       ++Y     +   
Sbjct: 822 RPSNLKELQAFLGML---NYYACYIPNITTI--LSPFHQLLVKDTPWNWIYREGQKNGNA 876

Query: 116 SGLGRI-----TENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVG 170
            GL R+     T N P   G ++  M+ + +   V  +        DP+ + V HQ   G
Sbjct: 877 DGLSRLPLPNETRNVPV-PGDIMFVMNHLEVNTPVKVKDIERWTSKDPILSAVRHQVMSG 935


>SB_7120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 30.3 bits (65), Expect = 0.96
 Identities = 17/53 (32%), Positives = 25/53 (47%)

Query: 99  VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTTA 151
           VK SA     YG  ++  GL R       ++ +V++T     I  G+A  TTA
Sbjct: 292 VKDSAVNAICYGAKLMIPGLLRYESGIEINEQIVIMTTKGEAIALGIALMTTA 344


>SB_13692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 60  PDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLG 119
           PDN+  +  C  K  + N    HI+ L +     PF++W +    Q+  + H  IK G+ 
Sbjct: 225 PDNIFLS--CPLKLFEDNSTEFHISYLAFFKDRKPFELWEQTVYFQEGRFSH--IKQGIY 280

Query: 120 R 120
           R
Sbjct: 281 R 281


>SB_13691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 60  PDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLG 119
           PDN+  +  C  K  + N    HI+ L +     PF++W +    Q+  + H  IK G+ 
Sbjct: 225 PDNIFLS--CPLKLFEDNSTEFHISYLAFFKDRKPFELWEQTVYFQEGRFSH--IKQGIY 280

Query: 120 R 120
           R
Sbjct: 281 R 281


>SB_58179| Best HMM Match : zf-C2H2 (HMM E-Value=4.7e-19)
          Length = 249

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 38  REKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPY 92
           RE+K+    +S   + +    +  N +S G C   FT+ +  + H+ AL    PY
Sbjct: 114 RERKEVTPIMSGNTVKVTSFKRAVNSMSCGKCDEVFTQCSSLQTHVCALFPSKPY 168


>SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32)
          Length = 779

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 5   SEDRTRILFEKLTKYIGVNVKL-----LIDRPDGTYC-FREKKDRVYYISEKLLHLAQTV 58
           S D  R L E L++     V+L     +   P+ TY   R  KD ++ + EK+  + ++ 
Sbjct: 606 SADHLRSLTEVLSRLDKAGVRLKRSKCIFQAPEVTYLGHRIDKDGIHPLDEKIKAIQESP 665

Query: 59  KPDNL 63
           +P NL
Sbjct: 666 RPSNL 670


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,947,532
Number of Sequences: 59808
Number of extensions: 223563
Number of successful extensions: 436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 7
length of query: 180
length of database: 16,821,457
effective HSP length: 78
effective length of query: 102
effective length of database: 12,156,433
effective search space: 1239956166
effective search space used: 1239956166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)