Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000127-TA|BGIBMGA000127-PA|IPR002478|PUA
(180 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80437-17|AAB37628.1| 180|Caenorhabditis elegans Hypothetical p... 230 5e-61
AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical... 30 0.83
AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear recep... 29 1.5
AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear recep... 29 1.5
AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear recep... 29 1.5
AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear recep... 29 1.5
AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormo... 29 1.5
Z98853-6|CAE17929.1| 128|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL110490-12|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 28 3.4
AC024779-4|AAK68484.1| 439|Caenorhabditis elegans Hypothetical ... 28 4.4
Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF016421-7|AAO12430.1| 413|Caenorhabditis elegans Hypothetical ... 27 7.7
>U80437-17|AAB37628.1| 180|Caenorhabditis elegans Hypothetical
protein C43E11.9 protein.
Length = 180
Score = 230 bits (562), Expect = 5e-61
Identities = 99/179 (55%), Positives = 137/179 (76%)
Query: 1 MKVLSEDRTRILFEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKP 60
M+ L+E+ T ++F KL +IG NV +LIDR DG YCFR K+RVYY SE L+ A +
Sbjct: 1 MRPLTEEETSLVFAKLASFIGDNVSMLIDRNDGDYCFRNHKERVYYCSENLMRQAACIAR 60
Query: 61 DNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGR 120
+ L+S GTC GKFTK+ KF L ITAL Y++PYA FKVW+KP+AEQQFLYG++I+KSG+ R
Sbjct: 61 EPLLSFGTCLGKFTKSKKFHLQITALDYLAPYAKFKVWLKPNAEQQFLYGNNILKSGIAR 120
Query: 121 ITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEYIRSEDTL 179
+T+ TP H G+VV +M+D+P+GFGV+++ T++ + ADP A +V HQ D+GEY+R+E L
Sbjct: 121 MTDGTPTHAGIVVYSMTDVPLGFGVSAKGTSDSKRADPTALVVLHQCDLGEYLRNESHL 179
>AL132862-18|CAB70230.2| 481|Caenorhabditis elegans Hypothetical
protein Y73F8A.24 protein.
Length = 481
Score = 30.3 bits (65), Expect = 0.83
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 33 GTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLH 82
G R++KD V+++++ L HLA D++ + GK FR++
Sbjct: 270 GVIFIRKRKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVETNFRVY 319
>AY305844-1|AAR11988.1| 423|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 423
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 7 DRTRILFEKLTKYIGV-NVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVS 65
DR IL + Y + N +L+I R DG F+EK + E AQ+++ +LV+
Sbjct: 160 DRMPILMKMRVNYRKMDNARLVIHRKDGQSLFKEKTPKAVNYKEA---CAQSIREVSLVA 216
Query: 66 --AGTCFGKFTKTNKFRLHITALTYISPYA 93
CF F + + + +P++
Sbjct: 217 DWVAWCFDDFVTLPMDQKKVLFRNFYTPFS 246
>AF273828-1|AAG15177.1| 422|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 422
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 7 DRTRILFEKLTKYIGV-NVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVS 65
DR IL + Y + N +L+I R DG F+EK + E AQ+++ +LV+
Sbjct: 159 DRMPILMKMRVNYRKMDNARLVIHRKDGQSLFKEKTPKAVNYKEA---CAQSIREVSLVA 215
Query: 66 --AGTCFGKFTKTNKFRLHITALTYISPYA 93
CF F + + + +P++
Sbjct: 216 DWVAWCFDDFVTLPMDQKKVLFRNFYTPFS 245
>AF273827-1|AAG15176.1| 421|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 421
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 7 DRTRILFEKLTKYIGV-NVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVS 65
DR IL + Y + N +L+I R DG F+EK + E AQ+++ +LV+
Sbjct: 158 DRMPILMKMRVNYRKMDNARLVIHRKDGQSLFKEKTPKAVNYKEA---CAQSIREVSLVA 214
Query: 66 --AGTCFGKFTKTNKFRLHITALTYISPYA 93
CF F + + + +P++
Sbjct: 215 DWVAWCFDDFVTLPMDQKKVLFRNFYTPFS 244
>AF273826-1|AAG15175.1| 419|Caenorhabditis elegans nuclear receptor
NHR-86 protein.
Length = 419
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 7 DRTRILFEKLTKYIGV-NVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVS 65
DR IL + Y + N +L+I R DG F+EK + E AQ+++ +LV+
Sbjct: 156 DRMPILMKMRVNYRKMDNARLVIHRKDGQSLFKEKTPKAVNYKEA---CAQSIREVSLVA 212
Query: 66 --AGTCFGKFTKTNKFRLHITALTYISPYA 93
CF F + + + +P++
Sbjct: 213 DWVAWCFDDFVTLPMDQKKVLFRNFYTPFS 242
>AC024771-7|AAK70663.4| 407|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 86 protein.
Length = 407
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 7 DRTRILFEKLTKYIGV-NVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVS 65
DR IL + Y + N +L+I R DG F+EK + E AQ+++ +LV+
Sbjct: 144 DRMPILMKMRVNYRKMDNARLVIHRKDGQSLFKEKTPKAVNYKEA---CAQSIREVSLVA 200
Query: 66 --AGTCFGKFTKTNKFRLHITALTYISPYA 93
CF F + + + +P++
Sbjct: 201 DWVAWCFDDFVTLPMDQKKVLFRNFYTPFS 230
>Z98853-6|CAE17929.1| 128|Caenorhabditis elegans Hypothetical
protein R08A2.7 protein.
Length = 128
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 96 KVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGV 145
K+W K SA +Y +K LG ++ +P VV+ + + +GF V
Sbjct: 54 KIWGKASAAS--IYWALDVKRALGGLSPRSPSKSNVVIEVGAKLRVGFSV 101
>AL110490-12|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 48 SEKLLHLAQTVKPDNLVSAGTCFGKFTK 75
++ LL + +TVKP L+ A T G FT+
Sbjct: 400 TKNLLEVVKTVKPGALIGASTVAGAFTE 427
>AC024779-4|AAK68484.1| 439|Caenorhabditis elegans Hypothetical
protein Y43B11AL.1 protein.
Length = 439
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 34 TYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTN 77
T C + ++++ + +LH AQ + +L+S FG F K N
Sbjct: 194 TQCETVRIEQIFNLETVILHNAQWITLPDLLSLNCRFGSFRKFN 237
>Z19152-2|CAA79544.1| 1150|Caenorhabditis elegans Hypothetical
protein B0464.2 protein.
Length = 1150
Score = 27.5 bits (58), Expect = 5.9
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 13 FEKLTKYIGVNVKLLIDRPDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGK 72
F + K NV LI + + ++ K +YY + + T+ D V G CF K
Sbjct: 166 FNYVVKTNPKNVLPLIGKAVIAFNKKDYKTAIYYFRKAIRQCRHTIA-DLRVGIGHCFAK 224
Query: 73 FTKTNKFRLHITALTYISPY 92
+K + I PY
Sbjct: 225 MGMMDKAKTAFERAMEIEPY 244
>AF016421-7|AAO12430.1| 413|Caenorhabditis elegans Hypothetical
protein F44E7.5a protein.
Length = 413
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 152 ECRHADPLATIVFHQADVGEYIRSEDTL 179
+C+HA+ +AT+++ YI SED L
Sbjct: 226 KCKHAENIATLLYSANWKRVYIHSEDVL 253
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.138 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,411,941
Number of Sequences: 27539
Number of extensions: 175998
Number of successful extensions: 282
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 12
length of query: 180
length of database: 12,573,161
effective HSP length: 77
effective length of query: 103
effective length of database: 10,452,658
effective search space: 1076623774
effective search space used: 1076623774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -