Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000127-TA|BGIBMGA000127-PA|IPR002478|PUA
(180 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15770.1 68417.m02401 60S ribosome subunit biogenesis protein... 120 6e-28
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR... 32 0.19
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 29 1.4
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 29 2.4
At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase famil... 29 2.4
At1g14420.1 68414.m01710 pectate lyase family protein similar to... 29 2.4
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 28 3.2
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 28 3.2
At3g54510.1 68416.m06032 early-responsive to dehydration protein... 28 4.2
At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger) fa... 27 5.5
>At4g15770.1 68417.m02401 60S ribosome subunit biogenesis protein,
putative contains similarity to 60S ribosome subunit
biogenesis protein NIP7 (Swiss-Prot:Q08962)
[Saccharomyces cerevisiae]
Length = 96
Score = 120 bits (289), Expect = 6e-28
Identities = 49/95 (51%), Positives = 71/95 (74%)
Query: 85 ALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFG 144
+L ++ A KVW+KP++E FLYG+H++K GLGRIT++ GVVV +MSD+P+GFG
Sbjct: 2 SLNILAANAKHKVWLKPTSEMSFLYGNHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFG 61
Query: 145 VASRTTAECRHADPLATIVFHQADVGEYIRSEDTL 179
+A+++T +CR DP +V HQAD+GEY+R ED L
Sbjct: 62 IAAKSTQDCRKLDPNGIVVLHQADIGEYLRGEDDL 96
>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1195
Score = 32.3 bits (70), Expect = 0.19
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 31 PDGTYCFREKKDRVYYISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYI 89
PDG C E +Y++ L L++ P NL+ + K T+ K I+ L ++
Sbjct: 628 PDGLKCSMENVRYLYWLQFPLKKLSKAFNPKNLIELNLPYSKITRLWKESKEISKLKWV 686
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 90 SPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRITENTPKH 128
+PY +K W S + FL G + ++SG TPK+
Sbjct: 383 TPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKN 421
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 99 VKPSAEQQFLYGHHIIKSGLGRITENTPKHQGVVVLTMSDIPIGFGVASRTT---AECRH 155
VK SA YG ++ GL R + VV++T I G+A TT A C H
Sbjct: 292 VKDSAVNAICYGAKLMIPGLLRFENDIDVGTEVVLMTTKGEAIAVGIAEMTTSVMATCDH 351
>At1g77590.1 68414.m09034 long-chain-fatty-acid--CoA ligase family
protein / long-chain acyl-CoA synthetase family protein
(LACS9) similar to LACS 3 [SP|O95573] from Homo Sapiens,
LACS 3 [SP|Q63151] from Rattus norvegicus; contains Pfam
HMM hit: AMP-binding enzymes PF00501
Length = 691
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 119 GRITENTPKHQGVVVLTMSDIPIGFGVASRTTAECRHADPLATIVFHQADVGEY 172
G +T + P +G +V+ S+I +G+ T E D F+ D+G +
Sbjct: 487 GYLTSDKPMPRGEIVIGGSNITLGYFKNEEKTKEVYKVDEKGMRWFYTGDIGRF 540
>At1g14420.1 68414.m01710 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 459
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 63 LVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQFLYGHHIIKSGLGRIT 122
++S G F N+ IT Y +PY +K W S FL G + ++SG
Sbjct: 363 IISQGNRF--IAPPNEEAKQITKREY-TPYGEWKSWNWQSEGDYFLNGAYFVQSGKANAW 419
Query: 123 ENTPK 127
+ PK
Sbjct: 420 SSKPK 424
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 77 NKFRLHITALTYISPYAPFKVWVKPSAEQQFLYG-HHIIKSGLGRITENTPKHQGVVVLT 135
N F + + L ++ A +V V PS + L +IK LG + E++ + V+V
Sbjct: 58 NYFHVKVVGLYFV---ATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYE 114
Query: 136 MSDIPIGFGVASRTTAE 152
+ D I FG T+ E
Sbjct: 115 LLDEVIDFGYVQTTSTE 131
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 77 NKFRLHITALTYISPYAPFKVWVKPSAEQQFLYG-HHIIKSGLGRITENTPKHQGVVVLT 135
N F + + L ++ A +V V PS + L +IK LG + E++ + V+V
Sbjct: 58 NYFHVKVVGLYFV---ATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYE 114
Query: 136 MSDIPIGFGVASRTTAE 152
+ D I FG T+ E
Sbjct: 115 LLDEVIDFGYVQTTSTE 131
>At3g54510.1 68416.m06032 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 617
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 47 ISEKLLHLAQTVKPDNLVSAGTCFGKFTKTNKFRLHITALTYISPYAPFKVWVKPSAEQQ 106
+S + L + Q + P N + G T F + +TA+ I+ Y K W P+ +
Sbjct: 239 VSWRNLAIPQKILPLNKI--GVILAAALLTIFFAIPVTAVQGIAKYEKLKKWFPPAMAIE 296
Query: 107 FLYGHHIIKSG 117
F+ G + +G
Sbjct: 297 FIPGLSSVVTG 307
>At2g44580.1 68415.m05548 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 624
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 148 RTTAECRHADPLATIVFHQADVGEYIR 174
+TTAE +H+ P TI A GE +R
Sbjct: 537 KTTAEEKHSSPYCTICLENATEGEKMR 563
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.322 0.138 0.412
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,164,084
Number of Sequences: 28952
Number of extensions: 163669
Number of successful extensions: 311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 10
length of query: 180
length of database: 12,070,560
effective HSP length: 77
effective length of query: 103
effective length of database: 9,841,256
effective search space: 1013649368
effective search space used: 1013649368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -