Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    29   0.40 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.5  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.5  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   8.5  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 3    DVALSQVGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
            D+AL  + E  +  D +A+  + + +     + + LK  A C+NL M +   K F+  + 
Sbjct: 1649 DLALQLLAE-ASEFDDLAIRHNEDLINIE--INKSLKYSAACLNLPMVDAHVKAFILTQA 1705

Query: 63   QLVRIKI 69
             + R+K+
Sbjct: 1706 HMARLKL 1712


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 6/78 (7%)

Query: 6    LSQVGEHLNNLDTVALETD--SEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRNQ 63
            L +V ++ N  +  + +T+  +EE   RK+V +Q   +    + I KE+ + + L  +NQ
Sbjct: 1476 LEKVRQNSNKSEGTSKDTEIPNEEEMERKKVMQQ--EVLRLRSRIAKELQKNELLRKQNQ 1533

Query: 64   LV--RIKIYGEPFLPSKE 79
            ++  ++K   E  + S+E
Sbjct: 1534 VLQDQVKALQETVVSSEE 1551


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 11  EHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRNQ 63
           +H NNL+ +     +E ++S    +RQ K+ A     + KE L    LSV+ +
Sbjct: 435 KHENNLNNITNSAKNEHIRS----QRQHKTHAAPSKELTKESLSNDQLSVKEK 483


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 36  RQLKSMAPCINLIMKEILEKKFLSVRNQLVRIKI 69
           R L S+   +  I KE+ ++ F S  +QL+R +I
Sbjct: 383 RNLLSVLQTVEQISKEVDKEYFSSTNHQLIRSEI 416


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,900
Number of Sequences: 5004
Number of extensions: 15348
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 4
length of query: 179
length of database: 2,362,478
effective HSP length: 69
effective length of query: 110
effective length of database: 2,017,202
effective search space: 221892220
effective search space used: 221892220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)