Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)               27   6.7  
SB_28842| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_20901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 26   EEVKSRKRVRRQLKSMAPCINLIMKEILE--KKFLSVRNQLVRIKIYGEPFLPSKE 79
            +EVK R  +++++ +    I  + KE++E  KK  ++ N++  +K+    +L  KE
Sbjct: 1205 DEVKGRDELKQKVDADIAAIEKLNKELIEASKKEKTLLNEIEALKVISAEYLLQKE 1260


>SB_33106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 2  CDVALSQV-GEHLNNLDTVALETD-SEEVKSRKRVRRQLKSMAPCINL 47
          C  + S V GE  NN D+V  E D + + KSRKR R        C++L
Sbjct: 53 CTTSSSHVDGE--NNKDSVNTEADGNSKAKSRKRARETTAPKRNCLSL 98


>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 22  ETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRNQL 64
           + D EE+K +KR R  LK        ++ E  ++K+ + RN L
Sbjct: 906 DEDEEELKEKKRKRLPLKVPQNATYALLLEKFKEKWQNFRNDL 948


>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
          Length = 2278

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 2    CDVALSQVGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMA 42
            CD+A+  +   +NNLD  +L   S+ ++ R     Q+ S++
Sbjct: 1480 CDLAIEDINTVINNLDQASLANISDGLEPRTEQPLQVWSLS 1520


>SB_28842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 28 VKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          VK RK V RQ      C++LI K   E  + ++RN
Sbjct: 8  VKRRKVVTRQSPPRTVCVHLIEKNPCELYYNNIRN 42


>SB_20901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 131 RQMDTNERKKLKRYGKLPEGWTP 153
           R MD N R+ +KRY +L EG++P
Sbjct: 45  RLMDGNSRQ-IKRYSRLMEGYSP 66


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,749,766
Number of Sequences: 59808
Number of extensions: 98871
Number of successful extensions: 227
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 6
length of query: 179
length of database: 16,821,457
effective HSP length: 78
effective length of query: 101
effective length of database: 12,156,433
effective search space: 1227799733
effective search space used: 1227799733
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)