GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P31744 Cluster: General secretion pathway protein F; n=...    36   0.71 
UniRef50_Q26EA4 Cluster: Magnesium and cobalt transport protein,...    34   1.6  
UniRef50_Q22T90 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_Q97M97 Cluster: Signal peptidase II (PSP1) homolog, YAA...    32   6.6  

>UniRef50_P31744 Cluster: General secretion pathway protein F; n=13;
           Xanthomonadaceae|Rep: General secretion pathway protein
           F - Xanthomonas campestris pv. campestris
          Length = 405

 Score = 35.5 bits (78), Expect = 0.71
 Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 8   QVGEHLNNLDTVALET-DSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSV 60
           QVGE    LDT+ L+T D+ E+++ + + R L ++ P I L++  ++    +SV
Sbjct: 340 QVGEESGALDTMLLKTADTFELETAQAIDRALAALVPLITLVLASVVGLVIISV 393


>UniRef50_Q26EA4 Cluster: Magnesium and cobalt transport protein,
           CorA; n=1; Flavobacteria bacterium BBFL7|Rep: Magnesium
           and cobalt transport protein, CorA - Flavobacteria
           bacterium BBFL7
          Length = 355

 Score = 34.3 bits (75), Expect = 1.6
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 4   VALSQVGEHLNNL-DTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
           +A+ Q+GE+LN+L D +  E D E +   +R +R L S+   I  + + I   K L  ++
Sbjct: 187 IAIEQIGEYLNDLEDEIFEEPDKESLNKVQRNKRLLLSLRRAIYPLRESI--SKLLKEQS 244

Query: 63  QLVRIKI 69
            L+  KI
Sbjct: 245 DLIDPKI 251


>UniRef50_Q22T90 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 131

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 32  KRVRRQLKSMAPCINLIMKEILEKKFLSVRNQLVRIKIYGEPF 74
           K  + Q+  + PCIN  M+ +L+  F + +N ++ +  YG P+
Sbjct: 72  KDKQTQVDELLPCINQYMQGVLKTFFGTCQNNILNLNSYGSPY 114


>UniRef50_Q97M97 Cluster: Signal peptidase II (PSP1) homolog, YAAT
           B.subtilis ortholog; n=53; cellular organisms|Rep:
           Signal peptidase II (PSP1) homolog, YAAT B.subtilis
           ortholog - Clostridium acetobutylicum
          Length = 303

 Score = 32.3 bits (70), Expect = 6.6
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 2   CDVALSQVGEH--LNNLDTVA-LETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFL 58
           C + L QVGE   ++ L +V  + TD +E+K R+   ++ ++   C++ I K  L  K +
Sbjct: 44  CVIGLKQVGEESIVSPLKSVIRVATDEDEIKYRENKNKEKEAFNICLSKIKKHELVMKLI 103

Query: 59  SV 60
            V
Sbjct: 104 DV 105


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,439,115
Number of Sequences: 1657284
Number of extensions: 3325714
Number of successful extensions: 9188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9187
Number of HSP's gapped (non-prelim): 4
length of query: 179
length of database: 575,637,011
effective HSP length: 96
effective length of query: 83
effective length of database: 416,537,747
effective search space: 34572633001
effective search space used: 34572633001
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 69 (31.9 bits)