GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    25   0.27 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.8  
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    21   5.8  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
          protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  +  +  +   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 40 IGEILQQIMNIT-DQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSLRN 91


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 66  RIKIYGEPFLPSKE 79
           RI +YG PF+ S E
Sbjct: 505 RINVYGLPFVRSME 518


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative
          cytochrome P450 monooxigenase protein.
          Length = 125

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 22 ETDSEEVKSRKRVRRQLKSMAPCINLIMK 50
          ET S++ K   +  ++LK M  CI  +++
Sbjct: 28 ETFSDDTKPDYKSLQELKYMERCIKEVLR 56


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,534
Number of Sequences: 317
Number of extensions: 665
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 179
length of database: 114,650
effective HSP length: 53
effective length of query: 126
effective length of database: 97,849
effective search space: 12328974
effective search space used: 12328974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)