GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    31   0.53 
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    28   3.7  
11_06_0520 + 24539403-24539603,24539919-24540325,24541002-245411...    27   6.5  

>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 4   VALSQVGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINL 47
           + L++ G  +  LD + ++  S + K+ KR+RR+L +    IN+
Sbjct: 890 IVLNEKGAEVRTLDLIGVQPPSPKPKTLKRLRRRLSADTDVINI 933


>11_04_0460 -
           17955102-17955146,17955253-17955310,17955442-17955593,
           17955888-17955993,17956101-17956222,17956766-17956834,
           17956969-17957214,17957331-17957373,17957449-17957520,
           17957954-17958066,17958158-17958238,17958343-17958415,
           17959413-17959519,17960410-17960514,17960684-17960974,
           17961621-17961707,17961774-17961842,17961917-17961973,
           17962057-17962155,17962223-17962312,17962395-17962511,
           17964164-17964244,17964353-17964502,17964812-17964956,
           17967359-17967510,17967647-17967784,17967838-17967914,
           17968032-17968134
          Length = 1015

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 24  DSEEVKSRKRVRRQ-LKSMAPCINLIMKEILEKKFLSVRNQLVRIKI--YGEPFLPSKED 80
           D ++ K   RV  Q L    P  + +++E  +   L +  +L + K   Y EP +P  ED
Sbjct: 375 DRDDAKKSIRVLLQILHFWEPQFHPLIREGHKDFLLDIARRLAKAKATEYSEPLIPQMED 434

Query: 81  LMP 83
            +P
Sbjct: 435 FLP 437


>11_06_0520 +
           24539403-24539603,24539919-24540325,24541002-24541187,
           24541550-24541742,24541945-24542021,24542400-24542550,
           24543229-24543462,24543577-24543591
          Length = 487

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 1   MCDVALSQVGEHLNNLDTVALETD---SEEVKSRKRVRRQLKSM 41
           M D +L  VG H  NL+ ++LE+D   +E V S  +  R LK++
Sbjct: 124 MTDASLHAVGSHCPNLEFLSLESDHIKNEGVVSVAKGCRLLKTL 167


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,529
Number of Sequences: 37544
Number of extensions: 85885
Number of successful extensions: 201
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 4
length of query: 179
length of database: 14,793,348
effective HSP length: 78
effective length of query: 101
effective length of database: 11,864,916
effective search space: 1198356516
effective search space used: 1198356516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)