GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3816|AAF47165.3| 1669|Drosophila melanogaster CG4049-PA...    29   4.8  
Z18864-1|CAA79313.1|  365|Drosophila melanogaster Dpbx protein.        28   6.4  
U33747-1|AAC46903.1|  376|Drosophila melanogaster extradenticle ...    28   6.4  
L19295-1|AAC37182.1|  376|Drosophila melanogaster extradenticle ...    28   6.4  
AY061065-1|AAL28613.1|  376|Drosophila melanogaster LD03509p pro...    28   6.4  
AE014298-2315|AAN09379.1|  376|Drosophila melanogaster CG8933-PC...    28   6.4  
AE014298-2314|AAF48556.1|  376|Drosophila melanogaster CG8933-PB...    28   6.4  
AE014298-2313|AAF48555.1|  376|Drosophila melanogaster CG8933-PA...    28   6.4  

>AE013599-3816|AAF47165.3| 1669|Drosophila melanogaster CG4049-PA
           protein.
          Length = 1669

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 14  NNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSV 60
           NNLDT  L    EE +   RV  Q KSM      I K+++ K+   +
Sbjct: 210 NNLDTTTLAAQREESERLARVAGQQKSMRE----IQKQVVHKQIFRI 252


>Z18864-1|CAA79313.1|  365|Drosophila melanogaster Dpbx protein.
          Length = 365

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  + +++ E   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 43 IGEILQQIMSIS-EQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSIRN 94


>U33747-1|AAC46903.1|  376|Drosophila melanogaster extradenticle
          protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  + +++ E   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 43 IGEILQQIMSIS-EQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSIRN 94


>L19295-1|AAC37182.1|  376|Drosophila melanogaster extradenticle
          protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  + +++ E   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 43 IGEILQQIMSIS-EQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSIRN 94


>AY061065-1|AAL28613.1|  376|Drosophila melanogaster LD03509p
          protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  + +++ E   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 43 IGEILQQIMSIS-EQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSIRN 94


>AE014298-2315|AAN09379.1|  376|Drosophila melanogaster CG8933-PC,
          isoform C protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  + +++ E   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 43 IGEILQQIMSIS-EQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSIRN 94


>AE014298-2314|AAF48556.1|  376|Drosophila melanogaster CG8933-PB,
          isoform B protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  + +++ E   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 43 IGEILQQIMSIS-EQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSIRN 94


>AE014298-2313|AAF48555.1|  376|Drosophila melanogaster CG8933-PA,
          isoform A protein.
          Length = 376

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 9  VGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRN 62
          +GE L  + +++ E   +E ++RK        M P +  ++ EI EK  LS+RN
Sbjct: 43 IGEILQQIMSIS-EQSLDEAQARKHTLN-CHRMKPALFSVLCEIKEKTVLSIRN 94


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,471,838
Number of Sequences: 52641
Number of extensions: 153634
Number of successful extensions: 471
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 24,830,863
effective HSP length: 80
effective length of query: 99
effective length of database: 20,619,583
effective search space: 2041338717
effective search space used: 2041338717
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)