GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC006730-7|AAF60473.1|  487|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
            C34G6.1 protein.
          Length = 1768

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 3    DVALSQVGEHLNNLDTVALETDSEEVKSRKRVRR-QLKSMAPCINLIMKEILEKKFLSVR 61
            + A+S + +H +  DTVA+E+     K  +     QLKS+ P + L ++   EK   ++R
Sbjct: 1533 EAAMSGLDDHGDRKDTVAIESIMALNKLVQLTNNDQLKSILPLVLLKIRPCFEKDSHTLR 1592

Query: 62   NQLVRIKIYGE 72
                   ++GE
Sbjct: 1593 --AASFSLFGE 1601


>AC006730-7|AAF60473.1|  487|Caenorhabditis elegans Hypothetical
           protein Y27F2A.6 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 15  NLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRNQLVRIKIYGEPF 74
           ++ TVA    S    S K V      M   ++ IMK  +EK+ L+  +++ ++K   E  
Sbjct: 299 SIKTVAKTVPSGAENSIKGVNNATSKMRASVDEIMKNRVEKQKLAEESEMAKLKKSLEGV 358

Query: 75  LPSKEDL 81
             +  DL
Sbjct: 359 SQANSDL 365


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,999
Number of Sequences: 27539
Number of extensions: 81202
Number of successful extensions: 261
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 12,573,161
effective HSP length: 77
effective length of query: 102
effective length of database: 10,452,658
effective search space: 1066171116
effective search space used: 1066171116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)