GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000126-TA|BGIBMGA000126-PA|undefined
         (179 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54550.1 68416.m06036 hypothetical protein contains Pfam prof...    29   1.8  
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...    28   3.1  
At5g54890.1 68418.m06837 expressed protein                             27   5.5  
At4g23750.2 68417.m03417 AP2 domain-containing transcription fac...    27   9.5  
At4g23750.1 68417.m03416 AP2 domain-containing transcription fac...    27   9.5  
At2g28690.1 68415.m03487 expressed protein                             27   9.5  
At1g58050.1 68414.m06579 helicase domain-containing protein cont...    27   9.5  

>At3g54550.1 68416.m06036 hypothetical protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 288

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 18  TVALETDSEEVKSRKRVRRQLKSMAPCINLIMKEILEK 55
           T + + D EE  S +RV R LKS+  C N+  +++  K
Sbjct: 93  TDSSDEDDEESSSSRRVLRSLKSLLLCANVSERDLETK 130


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/21 (57%), Positives = 16/21 (76%)

Query: 2   CDVALSQVGEHLNNLDTVALE 22
           CDVALS +GE +N+L  + LE
Sbjct: 515 CDVALSALGELINHLSRLKLE 535


>At5g54890.1 68418.m06837 expressed protein
          Length = 358

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 6   LSQVGEHLNNLDTVALETDSEEVKSRKRVRRQLKSMAPCINLIMKE 51
           + +V E     + V L+     +   KR+  +LK M PC+ ++ K+
Sbjct: 294 VGRVREEFETEEIVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKD 339


>At4g23750.2 68417.m03417 AP2 domain-containing transcription
           factor, putative DNA-binding protein Pti6 - Lycopersicon
           esculentum,PID:g2213785
          Length = 343

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 16  LDTVALETDS-EEVKSRKRVRRQLKS---MAPCINLIMKEILEKKFLSVRNQ 63
           LD+ A+ T S  +++S+KR +R +KS   ++P ++       EKKF  VR +
Sbjct: 77  LDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQR 128


>At4g23750.1 68417.m03416 AP2 domain-containing transcription
           factor, putative DNA-binding protein Pti6 - Lycopersicon
           esculentum,PID:g2213785
          Length = 343

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 16  LDTVALETDS-EEVKSRKRVRRQLKS---MAPCINLIMKEILEKKFLSVRNQ 63
           LD+ A+ T S  +++S+KR +R +KS   ++P ++       EKKF  VR +
Sbjct: 77  LDSGAVVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQR 128


>At2g28690.1 68415.m03487 expressed protein
          Length = 231

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 14  NNLDTVALETDSEEVKSRKR-VRRQLKSMAPCINLIMKEILEKKFLSVRNQLVRIKIYGE 72
           +N + V    +  + K+R++ V R LK + P ++ +M EI++ K L  + +L++  +   
Sbjct: 103 SNFNMVPEPINQVKFKNRQQLVNRNLKKIDP-VDALMDEIIKGKALPEKGKLLQTVMESG 161

Query: 73  PFL 75
           P L
Sbjct: 162 PLL 164


>At1g58050.1 68414.m06579 helicase domain-containing protein
           contains similarity to SP|P24785 Dosage compensation
           regulator (Male-less protein) (No action potential
           protein) {Drosophila melanogaster}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 1417

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 16  LDTVALETDS-EEVKSRKRVRRQLKSMAPCINLIMKEILEKKFLSVRNQL 64
           +D+   E D  + VKS  R RR     A C +L  K+  +KK    ++ L
Sbjct: 542 VDSCVKENDDLDVVKSNHRARRNSSMAAECSSLKQKQENKKKMQKYKDML 591


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,507
Number of Sequences: 28952
Number of extensions: 75875
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 7
length of query: 179
length of database: 12,070,560
effective HSP length: 77
effective length of query: 102
effective length of database: 9,841,256
effective search space: 1003808112
effective search space used: 1003808112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)