Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000125-TA|BGIBMGA000125-PA|IPR013520|Exonuclease, RNase
T and DNA polymerase III, IPR006055|Exonuclease,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (300 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    24   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.8  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   2.8  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    22   4.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.5  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 246 GLYKRLLDKDAVNAHRAEDDCVI 268
           G +KR + KD   A R E +C+I
Sbjct: 108 GFFKRTVRKDLSYACREEKNCII 130


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 204 DLNQQKCTNLKKGRKNKND------LTTQDQSLSIQNKSTKKREFT-LTGLYKRL 251
           DL++ K TNL+K   N N+         +D++ +  +K+T   +   L  LYK L
Sbjct: 311 DLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSL 365


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 204 DLNQQKCTNLKKGRKNKND------LTTQDQSLSIQNKSTKKREFT-LTGLYKRL 251
           DL++ K TNL+K   N N+         +D++ +  +K+T   +   L  LYK L
Sbjct: 203 DLSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYKSL 257


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 119 ECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKD 160
           EC +  + + S+L C++ +IG +++   +Q  LP  +  ++D
Sbjct: 378 ECPEVRLNIISNLDCVNEVIGIQQL---SQSLLPAIVELAED 416


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 214 KKGRKNKNDLT-TQDQSLSIQNKSTKKREFTLT 245
           KK R+N+   T TQ  SLS    +T KR+   T
Sbjct: 330 KKKRRNRESTTNTQSSSLSEFLTNTHKRKIENT 362


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 207 QQKCTNLKKGRKNKNDLTTQDQSLSIQNKST 237
           Q K   +KK    KN L  Q  +  + N ST
Sbjct: 277 QNKRAKIKKASGTKNPLALQLMAQGLYNHST 307


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 213 LKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLT 245
           +KK RK+K ++T +  S S    S +  +  L+
Sbjct: 373 VKKRRKDKREITRKSTSSSTHTSSQQTSDSFLS 405


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,547
Number of Sequences: 317
Number of extensions: 2900
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 300
length of database: 114,650
effective HSP length: 56
effective length of query: 244
effective length of database: 96,898
effective search space: 23643112
effective search space used: 23643112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)