Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000125-TA|BGIBMGA000125-PA|IPR013520|Exonuclease, RNase
T and DNA polymerase III, IPR006055|Exonuclease,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(300 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D55BE7 Cluster: PREDICTED: similar to CG3165-PA;... 153 7e-36
UniRef50_UPI00015B57E4 Cluster: PREDICTED: similar to three prim... 133 6e-30
UniRef50_Q5TQT2 Cluster: ENSANGP00000026876; n=1; Anopheles gamb... 119 8e-26
UniRef50_Q9VQJ7 Cluster: CG3165-PA; n=2; Sophophora|Rep: CG3165-... 115 1e-24
UniRef50_Q0C7B5 Cluster: Three prime repair exonuclease 1, putat... 113 4e-24
UniRef50_UPI000069F3E4 Cluster: UPI000069F3E4 related cluster; n... 95 2e-18
UniRef50_Q6QH49 Cluster: 3' repair exonuclease; n=4; Nucleopolyh... 93 6e-18
UniRef50_A7SCZ1 Cluster: Predicted protein; n=1; Nematostella ve... 92 1e-17
UniRef50_Q9NSU2 Cluster: Three prime repair exonuclease 1; n=17;... 85 2e-15
UniRef50_Q9BQ50 Cluster: Three prime repair exonuclease 2; n=16;... 80 8e-14
UniRef50_UPI0000E46C7F Cluster: PREDICTED: similar to Three prim... 70 8e-11
UniRef50_UPI0000E49E75 Cluster: PREDICTED: similar to three prim... 67 6e-10
UniRef50_A0LZ46 Cluster: Exonuclease family protein; n=10; Flavo... 66 1e-09
UniRef50_A6ESS3 Cluster: DNA polymerase III, epsilon subunit; n=... 65 2e-09
UniRef50_A4C086 Cluster: DNA polymerase III subunit; n=2; Polari... 64 3e-09
UniRef50_A6DIP6 Cluster: Exonuclease; n=1; Lentisphaera araneosa... 60 5e-08
UniRef50_A4CLT9 Cluster: Putative uncharacterized protein; n=1; ... 60 5e-08
UniRef50_Q934V3 Cluster: Putative uncharacterized protein HCM2.0... 58 3e-07
UniRef50_A5FIG6 Cluster: DNA polymerase III, epsilon subunit; n=... 55 2e-06
UniRef50_A4BWD8 Cluster: DNA polymerase III, epsilon subunit; n=... 55 2e-06
UniRef50_A2TNW8 Cluster: DNA polymerase III, epsilon subunit; n=... 55 2e-06
UniRef50_Q895K2 Cluster: DNA polymerase III polC-type; n=14; Clo... 55 2e-06
UniRef50_Q011G8 Cluster: DNA helicase RecG; n=2; Ostreococcus|Re... 54 3e-06
UniRef50_Q5DB02 Cluster: SJCHGC02520 protein; n=2; Schistosoma j... 54 3e-06
UniRef50_Q81ST0 Cluster: DnaQ family exonuclease/DinG family hel... 54 4e-06
UniRef50_A1ZKT0 Cluster: Exonuclease; n=1; Microscilla marina AT... 54 4e-06
UniRef50_Q60WS9 Cluster: Putative uncharacterized protein CBG190... 54 6e-06
UniRef50_A1RKY8 Cluster: DNA polymerase III, epsilon subunit; n=... 53 1e-05
UniRef50_A4YW65 Cluster: Putative uncharacterized protein; n=2; ... 52 1e-05
UniRef50_UPI0000E47DC6 Cluster: PREDICTED: similar to 3-5 exonuc... 52 2e-05
UniRef50_Q92AA9 Cluster: DinG protein; n=13; Listeria|Rep: DinG ... 52 2e-05
UniRef50_Q8EUK5 Cluster: DNA polymerase III subunit alpha; n=1; ... 52 2e-05
UniRef50_Q63RW4 Cluster: Possible DNA polymerase/helicase; n=27;... 51 3e-05
UniRef50_Q0LKH2 Cluster: DNA polymerase III, epsilon subunit; n=... 51 4e-05
UniRef50_A5VK04 Cluster: DnaQ family exonuclease/DinG family hel... 51 4e-05
UniRef50_A3UIB9 Cluster: DNA polymerase III, epsilon subunit; n=... 51 4e-05
UniRef50_Q26FQ2 Cluster: DNA polymerase III, epsilon subunit; n=... 50 6e-05
UniRef50_Q1ART4 Cluster: DNA polymerase III, epsilon subunit; n=... 50 7e-05
UniRef50_Q3SKJ9 Cluster: DNA polymerase III, epsilon subunit; n=... 50 1e-04
UniRef50_A7A526 Cluster: Putative uncharacterized protein; n=1; ... 50 1e-04
UniRef50_A5F9M6 Cluster: DNA polymerase III, epsilon subunit rel... 49 1e-04
UniRef50_A4X9Y0 Cluster: DNA polymerase III, epsilon subunit; n=... 49 1e-04
UniRef50_A3XPR4 Cluster: Nuclease subunit Cho of the excinucleas... 49 1e-04
UniRef50_A4KRE5 Cluster: DNA polymerase III, epsilon subunit; n=... 49 2e-04
UniRef50_Q5P3L6 Cluster: Nuclease subunit Cho of the excinucleas... 48 2e-04
UniRef50_Q1MZX4 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_A6EU25 Cluster: DNA polymerase III, epsilon subunit; n=... 48 2e-04
UniRef50_A3Q7A4 Cluster: DNA polymerase III, epsilon subunit; n=... 48 2e-04
UniRef50_A1ZC44 Cluster: DNA polymerase III, epsilon subunit; n=... 48 2e-04
UniRef50_Q64S03 Cluster: DNA polymerase III epsilon chain; n=5; ... 48 3e-04
UniRef50_A0GYI8 Cluster: DNA polymerase III, epsilon subunit; n=... 48 3e-04
UniRef50_Q7NC15 Cluster: PolC; n=1; Mycoplasma gallisepticum|Rep... 48 4e-04
UniRef50_Q9JYS6 Cluster: DNA polymerase III, epsilon subunit; n=... 47 5e-04
UniRef50_Q8EQD9 Cluster: ATP-dependent DNA helicase; n=1; Oceano... 47 5e-04
UniRef50_Q81Y85 Cluster: DNA polymerase III, epsilon subunit, pu... 47 5e-04
UniRef50_Q83YZ1 Cluster: DNA polymerase III alpha subunit; n=1; ... 47 5e-04
UniRef50_A4AXV6 Cluster: Putative uncharacterized protein; n=2; ... 47 5e-04
UniRef50_A7CWU9 Cluster: DNA-directed DNA polymerase; n=1; Opitu... 47 7e-04
UniRef50_Q10384 Cluster: Uncharacterized protein Rv2191/MT2247; ... 47 7e-04
UniRef50_A6ECG9 Cluster: DNA polymerase III, epsilon subunit; n=... 46 0.001
UniRef50_A2U0G0 Cluster: DNA Pol III Epsilon Chain; n=2; Polarib... 46 0.001
UniRef50_O83649 Cluster: DNA polymerase III subunit epsilon; n=1... 46 0.001
UniRef50_Q7NZA2 Cluster: Probable DNA-directed DNA polymerase II... 46 0.001
UniRef50_Q01KC6 Cluster: H0215F08.4 protein; n=4; Oryza sativa|R... 46 0.001
UniRef50_Q9CEK5 Cluster: ATP-dependent helicase DinG; n=3; Lacto... 46 0.002
UniRef50_Q6KIN3 Cluster: DNA polymerase III alpha subunit; n=1; ... 46 0.002
UniRef50_Q1YU82 Cluster: DNA polymerase III, epsilon subunit; n=... 46 0.002
UniRef50_Q0SFP4 Cluster: Probable DNA polymerase III; n=1; Rhodo... 46 0.002
UniRef50_A3HRT4 Cluster: Putative uncharacterized protein; n=1; ... 46 0.002
UniRef50_A1G6Z7 Cluster: DNA polymerase III, epsilon subunit; n=... 46 0.002
UniRef50_Q1WU39 Cluster: ATP-dependent helicase, DinG family; n=... 45 0.003
UniRef50_A4G2P4 Cluster: Putative DNA polymerase/helicase; n=1; ... 45 0.003
UniRef50_Q682U6 Cluster: Putative uncharacterized protein At5g26... 45 0.003
UniRef50_Q9KC83 Cluster: ATP-dependent DNA helicase; n=3; Bacill... 44 0.004
UniRef50_Q8YE22 Cluster: DNA POLYMERASE III, EPSILON CHAIN; n=27... 44 0.004
UniRef50_Q5FJX1 Cluster: ATP-dependent DNA helicase; n=5; Lactob... 44 0.004
UniRef50_Q21VB4 Cluster: DNA polymerase III, epsilon subunit; n=... 44 0.004
UniRef50_A4SZE6 Cluster: DNA polymerase III, epsilon subunit; n=... 44 0.004
UniRef50_A3JBF5 Cluster: Putative uncharacterized protein; n=2; ... 44 0.004
UniRef50_A0Y3N2 Cluster: Putative uncharacterized protein; n=2; ... 44 0.004
UniRef50_A5BCR2 Cluster: Putative uncharacterized protein; n=1; ... 44 0.004
UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2; ... 44 0.005
UniRef50_Q14P64 Cluster: Probable dna polymerase III alpha subun... 44 0.005
UniRef50_A6SVF1 Cluster: Uncharacterized conserved protein; n=4;... 44 0.005
UniRef50_A0TFD8 Cluster: DNA polymerase III, epsilon subunit; n=... 44 0.005
UniRef50_Q2B3X2 Cluster: ATP-dependent DNA helicase; n=2; Bacill... 44 0.006
UniRef50_A5EY86 Cluster: DNA polymerase III, epsilon subunit; n=... 44 0.006
UniRef50_A2UA15 Cluster: DNA polymerase III, epsilon subunit; n=... 44 0.006
UniRef50_Q9PQB4 Cluster: DNA polymerase III polC-type; n=1; Urea... 44 0.006
UniRef50_Q839U7 Cluster: DNA polymerase III, epsilon subunit; n=... 43 0.008
UniRef50_A6P0N2 Cluster: Putative uncharacterized protein; n=1; ... 43 0.008
UniRef50_Q8A811 Cluster: DNA Pol III Epsilon Chain; n=21; cellul... 43 0.011
UniRef50_A6PV20 Cluster: DNA polymerase III, epsilon subunit; n=... 43 0.011
UniRef50_Q38X67 Cluster: Putative ATP-dependent helicase, DinG f... 42 0.015
UniRef50_Q3JDE1 Cluster: Exonuclease; n=3; Gammaproteobacteria|R... 42 0.019
UniRef50_A2EQX6 Cluster: Putative uncharacterized protein; n=1; ... 42 0.019
UniRef50_Q3K0L7 Cluster: Exonuclease, DNA polymerase III, epsilo... 42 0.026
UniRef50_A6WGD9 Cluster: DNA polymerase III, epsilon subunit; n=... 42 0.026
UniRef50_A5Z7T3 Cluster: Putative uncharacterized protein; n=1; ... 42 0.026
UniRef50_A5KMD9 Cluster: Putative uncharacterized protein; n=1; ... 42 0.026
UniRef50_Q9Z8D3 Cluster: DNA Polymerase III Epsilon Chain; n=8; ... 41 0.034
UniRef50_Q1VJ53 Cluster: DNA polymerase III subunit epsilon; n=1... 41 0.034
UniRef50_Q55C81 Cluster: Putative uncharacterized protein; n=1; ... 41 0.034
UniRef50_Q895Z5 Cluster: DNA polymerase III alpha subunit; n=1; ... 41 0.045
UniRef50_Q2MG35 Cluster: DNA polymerase III, epsilon subunit; n=... 41 0.045
UniRef50_A7B5W2 Cluster: Putative uncharacterized protein; n=1; ... 41 0.045
UniRef50_A5UUI5 Cluster: DNA polymerase III, epsilon subunit; n=... 41 0.045
UniRef50_A7RWU1 Cluster: Predicted protein; n=2; Nematostella ve... 41 0.045
UniRef50_Q831X1 Cluster: DNA polymerase III, epsilon subunit/ATP... 40 0.059
UniRef50_Q15TC4 Cluster: DNA polymerase III, epsilon subunit; n=... 40 0.059
UniRef50_Q038V8 Cluster: Rad3-related DNA helicase; n=1; Lactoba... 40 0.059
UniRef50_Q8RA32 Cluster: DNA polymerase III polC-type; n=7; Clos... 40 0.059
UniRef50_UPI0000ECCA32 Cluster: UPI0000ECCA32 related cluster; n... 40 0.078
UniRef50_Q0EZC1 Cluster: Probable DNA polymerase III (Epsilon ch... 40 0.10
UniRef50_P47729 Cluster: DNA polymerase III polC-type; n=1; Myco... 40 0.10
UniRef50_Q2Q0H1 Cluster: Putative DNA polymerase type III, exonu... 39 0.14
UniRef50_Q89WN8 Cluster: DNA polymerase III epsilon chain; n=7; ... 39 0.14
UniRef50_Q30T43 Cluster: Exonuclease; n=1; Thiomicrospira denitr... 39 0.14
UniRef50_Q2GDU1 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.14
UniRef50_A0L3L4 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.14
UniRef50_Q8IAP9 Cluster: Putative uncharacterized protein MAL8P1... 39 0.14
UniRef50_Q8U4P3 Cluster: Putative uncharacterized protein PF0037... 39 0.14
UniRef50_Q5KXX5 Cluster: ATP-dependent DNA helicase; n=2; Geobac... 39 0.18
UniRef50_Q1UAN0 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.18
UniRef50_Q11UG6 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.18
UniRef50_A4CM07 Cluster: DNA polymerase III, epsilon subunit; n=... 39 0.18
UniRef50_A3I8T8 Cluster: Bifunctional ATP-dependent DNA helicase... 39 0.18
UniRef50_Q9PJK6 Cluster: DNA polymerase III, epsilon subunit, pu... 38 0.24
UniRef50_Q9CGW0 Cluster: DNA polymerase III, epsilon chain; n=3;... 38 0.24
UniRef50_Q4JWC2 Cluster: Putative exonuclease; n=1; Corynebacter... 38 0.24
UniRef50_A5Z9S3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.24
UniRef50_A5CE47 Cluster: DNA polymerase III epsilon chain; n=1; ... 38 0.24
UniRef50_A2PLZ2 Cluster: Gp39; n=2; Vibrio cholerae|Rep: Gp39 - ... 38 0.24
UniRef50_Q6X0M1 Cluster: Putative uncharacterized protein; n=1; ... 38 0.24
UniRef50_P54394 Cluster: Probable ATP-dependent helicase dinG ho... 38 0.24
UniRef50_Q47S15 Cluster: Exonuclease; n=1; Thermobifida fusca YX... 38 0.32
UniRef50_Q05FQ3 Cluster: DNA polymerase III epsilon subunit; n=1... 38 0.32
UniRef50_A1SNC5 Cluster: Exonuclease, RNase T and DNA polymerase... 38 0.32
UniRef50_A4VDG4 Cluster: Putative uncharacterized protein; n=1; ... 38 0.32
UniRef50_Q88WB1 Cluster: ATP-dependent helicase DinG; n=2; Lacto... 38 0.42
UniRef50_Q6MC14 Cluster: Putative DNA polymerase III, epsilon ch... 38 0.42
UniRef50_Q081L5 Cluster: DNA polymerase III, epsilon subunit; n=... 38 0.42
UniRef50_A4TVW6 Cluster: DNA polymerase III, epsilon subunit; n=... 38 0.42
UniRef50_A1K1I0 Cluster: DNA-directed DNA polymerase; n=24; Prot... 38 0.42
UniRef50_A1YZY0 Cluster: Gram-positive type DNA polymerase III a... 38 0.42
UniRef50_Q4QGE6 Cluster: Mitochondrial DNA polymerase I protein ... 38 0.42
UniRef50_Q9ZHF6 Cluster: DNA polymerase III polC-type; n=3; Ther... 38 0.42
UniRef50_Q3VN57 Cluster: Exonuclease; n=2; Chlorobium/Pelodictyo... 37 0.55
UniRef50_Q1K1G2 Cluster: DNA polymerase III, epsilon subunit; n=... 37 0.55
UniRef50_Q04A97 Cluster: DNA polymerase III, epsilon subunit rel... 37 0.55
UniRef50_A6LLU9 Cluster: DNA polymerase III, alpha subunit; n=1;... 37 0.55
UniRef50_Q4Y5W2 Cluster: Putative uncharacterized protein; n=3; ... 37 0.55
UniRef50_Q24F68 Cluster: Zinc finger protein; n=1; Tetrahymena t... 37 0.55
UniRef50_UPI00015B5C05 Cluster: PREDICTED: similar to putative S... 37 0.73
UniRef50_A4ECT2 Cluster: Putative uncharacterized protein; n=1; ... 37 0.73
UniRef50_A0NJE4 Cluster: DNA helicase, Rad3-related family; n=2;... 37 0.73
UniRef50_Q5CPW3 Cluster: Large uncharacterized protein; n=2; Cry... 37 0.73
UniRef50_Q4XLK9 Cluster: Putative uncharacterized protein; n=1; ... 37 0.73
UniRef50_Q241C7 Cluster: Protein kinase domain containing protei... 37 0.73
UniRef50_O77339 Cluster: Putative uncharacterized protein MAL3P4... 37 0.73
UniRef50_A2FU34 Cluster: Putative uncharacterized protein; n=1; ... 37 0.73
UniRef50_P38978 Cluster: KS1 protein precursor; n=4; Hydra|Rep: ... 37 0.73
UniRef50_Q600A7 Cluster: DNA polymerase III, alpha chain; n=4; M... 36 0.96
UniRef50_Q03WE5 Cluster: Rad3-related DNA helicase; n=1; Leucono... 36 0.96
UniRef50_Q03FN6 Cluster: Rad3-related DNA helicase; n=1; Pedioco... 36 0.96
UniRef50_A5IU60 Cluster: Exonuclease, RNase T and DNA polymerase... 36 0.96
UniRef50_Q68BL2 Cluster: DNA helicase RecG; n=1; Nannochloris ba... 36 0.96
UniRef50_A2EQG1 Cluster: Putative uncharacterized protein; n=1; ... 36 0.96
UniRef50_Q59XT8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.96
UniRef50_A7EE08 Cluster: Putative uncharacterized protein; n=1; ... 36 0.96
UniRef50_Q8XJR3 Cluster: DNA polymerase III polC-type; n=9; Clos... 36 0.96
UniRef50_P43745 Cluster: DNA polymerase III subunit epsilon; n=4... 36 0.96
UniRef50_Q8CUQ0 Cluster: Hypothetical conserved protein; n=1; Oc... 36 1.3
UniRef50_Q5GS93 Cluster: DNA polymerase III epsilon subunit; n=4... 36 1.3
UniRef50_Q2S3Z9 Cluster: Exonuclease, putative; n=1; Salinibacte... 36 1.3
UniRef50_Q2RJC1 Cluster: DNA polymerase III, epsilon subunit; n=... 36 1.3
UniRef50_Q6M3W0 Cluster: DNA polymerase III epsilon subunit or r... 36 1.3
UniRef50_Q057S0 Cluster: DNA polymerase III, e subunit; n=1; Buc... 36 1.3
UniRef50_A7HNS3 Cluster: DNA polymerase III, alpha subunit; n=1;... 36 1.3
UniRef50_A3V111 Cluster: Exonuclease, DNA polymerase III, epsilo... 36 1.3
UniRef50_Q8IKG1 Cluster: Putative uncharacterized protein; n=3; ... 36 1.3
UniRef50_Q5CVW6 Cluster: Sushi-domain containing secreted protei... 36 1.3
UniRef50_Q297P0 Cluster: GA10321-PA; n=1; Drosophila pseudoobscu... 36 1.3
UniRef50_A2EZT9 Cluster: Putative uncharacterized protein; n=1; ... 36 1.3
UniRef50_Q92GL1 Cluster: DNA polymerase III subunit epsilon; n=9... 36 1.3
UniRef50_Q86XK3 Cluster: Uncharacterized protein C10orf78; n=13;... 36 1.3
UniRef50_UPI0000510268 Cluster: COG0322: Nuclease subunit of the... 36 1.7
UniRef50_UPI0000499A87 Cluster: hypothetical protein 151.t00016;... 36 1.7
UniRef50_Q73L66 Cluster: DNA polymerase III domain protein; n=1;... 36 1.7
UniRef50_Q67P96 Cluster: DNA polymerase III alpha subunit; n=1; ... 36 1.7
UniRef50_Q60AW7 Cluster: DNA polymerase III, epsilon subunit; n=... 36 1.7
UniRef50_Q1FF73 Cluster: DNA polymerase III, epsilon subunit:DNA... 36 1.7
UniRef50_Q8I3H0 Cluster: Putative uncharacterized protein PFE148... 36 1.7
UniRef50_Q23FG9 Cluster: Cation channel family protein; n=1; Tet... 36 1.7
UniRef50_Q22AT3 Cluster: Viral A-type inclusion protein repeat c... 36 1.7
UniRef50_A2EPG1 Cluster: Viral A-type inclusion protein, putativ... 36 1.7
UniRef50_A2E8Z5 Cluster: Viral A-type inclusion protein, putativ... 36 1.7
UniRef50_Q6BVF0 Cluster: Similar to CA1986|IPF14899 Candida albi... 36 1.7
UniRef50_Q6LYU6 Cluster: Exonuclease; n=4; Methanococcus|Rep: Ex... 36 1.7
UniRef50_P08799 Cluster: Myosin-2 heavy chain, non muscle; n=5; ... 36 1.7
UniRef50_UPI00015B4173 Cluster: PREDICTED: similar to conserved ... 35 2.2
UniRef50_UPI00006CD2EC Cluster: hypothetical protein TTHERM_0026... 35 2.2
UniRef50_UPI00006CBD20 Cluster: hypothetical protein TTHERM_0015... 35 2.2
UniRef50_Q7VQB5 Cluster: DNA polymerase III epsilon subunit; n=5... 35 2.2
UniRef50_A7A5A0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_A6DE82 Cluster: Exonuclease SbcC; n=1; Caminibacter med... 35 2.2
UniRef50_A6DDM5 Cluster: DNA polymerase III, epsilon chain; n=1;... 35 2.2
UniRef50_A5TTA5 Cluster: DNA-directed DNA polymerase III alpha s... 35 2.2
UniRef50_A5MUE3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_Q7RPF9 Cluster: Homeobox-containing protein; n=2; Plasm... 35 2.2
UniRef50_Q7PDQ2 Cluster: MRNA capping enzyme, beta chain, putati... 35 2.2
UniRef50_Q4UHS6 Cluster: Putative uncharacterized protein; n=2; ... 35 2.2
UniRef50_O97291 Cluster: Putative uncharacterized protein MAL3P7... 35 2.2
UniRef50_A7RQV9 Cluster: Predicted protein; n=1; Nematostella ve... 35 2.2
UniRef50_P18037 Cluster: Minor outer capsid protein; n=94; Rotav... 35 2.2
UniRef50_Q86VP1 Cluster: Tax1-binding protein 1; n=64; Tetrapoda... 35 2.2
UniRef50_UPI00015B42FE Cluster: PREDICTED: hypothetical protein;... 35 2.9
UniRef50_UPI0000F1DE53 Cluster: PREDICTED: hypothetical protein;... 35 2.9
UniRef50_UPI00006CB9F1 Cluster: hypothetical protein TTHERM_0055... 35 2.9
UniRef50_UPI00004D7430 Cluster: Serologically defined colon canc... 35 2.9
UniRef50_UPI0000ECA393 Cluster: Novel protein.; n=3; Gallus gall... 35 2.9
UniRef50_Q5ZLQ8 Cluster: Putative uncharacterized protein; n=2; ... 35 2.9
UniRef50_Q9K6I8 Cluster: BH3741 protein; n=1; Bacillus haloduran... 35 2.9
UniRef50_Q6F1H8 Cluster: DNA polymerase III alpha subunit; n=5; ... 35 2.9
UniRef50_A5IXK4 Cluster: DNA polymerase III alpha subunit; n=1; ... 35 2.9
UniRef50_A4YW45 Cluster: Putative uncharacterized protein; n=1; ... 35 2.9
UniRef50_A4M5M6 Cluster: DNA polymerase III, alpha subunit; n=1;... 35 2.9
UniRef50_A0K225 Cluster: DNA polymerase III, epsilon subunit; n=... 35 2.9
UniRef50_Q8IL10 Cluster: Putative uncharacterized protein; n=3; ... 35 2.9
UniRef50_Q8ID14 Cluster: Putative uncharacterized protein PF13_0... 35 2.9
UniRef50_Q8IBG1 Cluster: Dynein heavy chain, putative; n=2; Plas... 35 2.9
UniRef50_Q7RGE8 Cluster: Putative uncharacterized protein PY0439... 35 2.9
UniRef50_Q7R852 Cluster: Isoleucyl-tRNA syntehtase-related; n=1;... 35 2.9
UniRef50_Q54KG0 Cluster: Putative uncharacterized protein; n=1; ... 35 2.9
UniRef50_Q4YLM6 Cluster: Putative uncharacterized protein; n=1; ... 35 2.9
UniRef50_Q4UDH7 Cluster: Smc protein, putative; n=2; Theileria|R... 35 2.9
UniRef50_Q23RE0 Cluster: MT-A70 family protein; n=1; Tetrahymena... 35 2.9
UniRef50_Q22A56 Cluster: Cation channel family protein; n=2; Tet... 35 2.9
UniRef50_A2F0Q2 Cluster: Putative uncharacterized protein; n=1; ... 35 2.9
UniRef50_A2EJ43 Cluster: Viral A-type inclusion protein, putativ... 35 2.9
UniRef50_A2E8H6 Cluster: Viral A-type inclusion protein, putativ... 35 2.9
UniRef50_Q2FLJ5 Cluster: Exonuclease; n=1; Methanospirillum hung... 35 2.9
UniRef50_UPI000150AB94 Cluster: hypothetical protein TTHERM_0075... 34 3.9
UniRef50_UPI00006CFADA Cluster: Ubiquitin-conjugating enzyme fam... 34 3.9
UniRef50_Q7MAI6 Cluster: DNA POLYMERASE III EPSILON SUBUNIT DNAQ... 34 3.9
UniRef50_Q5SK39 Cluster: DNA polymerase III epsilon chain-like p... 34 3.9
UniRef50_Q47RH7 Cluster: DNA polymerase III, epsilon subunit; n=... 34 3.9
UniRef50_Q3VXD4 Cluster: Exonuclease; n=1; Frankia sp. EAN1pec|R... 34 3.9
UniRef50_Q3D960 Cluster: DnaQ family exonuclease/DinG family hel... 34 3.9
UniRef50_Q0A6Z2 Cluster: Putative PAS/PAC sensor protein precurs... 34 3.9
UniRef50_A7GSG4 Cluster: Sporulation lipoprotein YhcN/YlaJ precu... 34 3.9
UniRef50_A3EQH5 Cluster: DNA polymerase III, epsilon subunit; n=... 34 3.9
UniRef50_Q8IEG8 Cluster: Putative uncharacterized protein MAL13P... 34 3.9
UniRef50_Q8I2P1 Cluster: Putative uncharacterized protein PFI131... 34 3.9
UniRef50_Q5BYU8 Cluster: SJCHGC09055 protein; n=1; Schistosoma j... 34 3.9
UniRef50_Q54QM3 Cluster: PHD Zn finger-containing protein; n=1; ... 34 3.9
UniRef50_Q4QCV4 Cluster: Putative uncharacterized protein; n=2; ... 34 3.9
UniRef50_Q4D4N5 Cluster: Mitochondrial DNA polymerase I protein ... 34 3.9
UniRef50_Q24FF9 Cluster: Putative uncharacterized protein; n=2; ... 34 3.9
UniRef50_Q23GY9 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A5K139 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A4VD29 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A2FQ07 Cluster: Viral A-type inclusion protein, putativ... 34 3.9
UniRef50_A2E7B0 Cluster: Putative uncharacterized protein; n=5; ... 34 3.9
UniRef50_A2DU96 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_A0BFP9 Cluster: Chromosome undetermined scaffold_104, w... 34 3.9
UniRef50_A3LT47 Cluster: Predicted protein; n=2; Saccharomycetal... 34 3.9
UniRef50_A1RTY4 Cluster: Putative uncharacterized protein precur... 34 3.9
UniRef50_Q75BH9 Cluster: Guanine nucleotide exchange factor LTE1... 34 3.9
UniRef50_UPI0000E477E1 Cluster: PREDICTED: hypothetical protein;... 34 5.1
UniRef50_UPI0000D55BAD Cluster: PREDICTED: similar to CG40494-PA... 34 5.1
UniRef50_Q1WA52 Cluster: Putative uncharacterized protein; n=3; ... 34 5.1
UniRef50_Q6HVP9 Cluster: Exonuclease family protein; n=8; Bacill... 34 5.1
UniRef50_Q41GU3 Cluster: DNA polymerase III, epsilon subunit:Dna... 34 5.1
UniRef50_Q11G58 Cluster: DNA polymerase III, epsilon subunit; n=... 34 5.1
UniRef50_Q0PC85 Cluster: Putative flagellar hook-length control ... 34 5.1
UniRef50_A6NSI0 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_A0VNX7 Cluster: DNA polymerase III, epsilon subunit pre... 34 5.1
UniRef50_Q8IK03 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_Q8I663 Cluster: Putative uncharacterized protein PFB027... 34 5.1
UniRef50_Q8I307 Cluster: Putative uncharacterized protein PFI071... 34 5.1
UniRef50_Q7RE16 Cluster: Putative uncharacterized protein PY0525... 34 5.1
UniRef50_Q7R8K0 Cluster: Putative uncharacterized protein PY0722... 34 5.1
UniRef50_Q5CYR0 Cluster: Protein with signal peptide and Sec14d ... 34 5.1
UniRef50_Q55CB5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_Q241C2 Cluster: HSA family protein; n=5; Oligohymenopho... 34 5.1
UniRef50_Q23RB9 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_A2FX23 Cluster: Formin Homology 2 Domain containing pro... 34 5.1
UniRef50_A2ESN0 Cluster: Viral A-type inclusion protein, putativ... 34 5.1
UniRef50_A2D7K4 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_A0BRZ9 Cluster: Chromosome undetermined scaffold_124, w... 34 5.1
UniRef50_Q59UF5 Cluster: Potential GRIP domain Golgi protein; n=... 34 5.1
UniRef50_A7TMA9 Cluster: Putative uncharacterized protein; n=1; ... 34 5.1
UniRef50_UPI00006D0DA9 Cluster: hypothetical protein TTHERM_0064... 33 6.8
UniRef50_UPI00006CE58F Cluster: hypothetical protein TTHERM_0014... 33 6.8
UniRef50_UPI00006CBD45 Cluster: hypothetical protein TTHERM_0015... 33 6.8
UniRef50_UPI00006CA6C3 Cluster: hypothetical protein TTHERM_0068... 33 6.8
UniRef50_Q5FNU3 Cluster: Ribose ABC transporter, periplasmic bin... 33 6.8
UniRef50_Q1QV02 Cluster: Substrate-binding region of ABC-type gl... 33 6.8
UniRef50_Q1HEQ2 Cluster: Beta-galactosidase precursor; n=1; Myco... 33 6.8
UniRef50_A6DJ12 Cluster: Serine/threonine-protein kinase; n=1; L... 33 6.8
UniRef50_A5NR20 Cluster: Exonuclease, RNase T and DNA polymerase... 33 6.8
UniRef50_A4J5B5 Cluster: DNA polymerase III, epsilon subunit; n=... 33 6.8
UniRef50_Q9VC58 Cluster: CG13626-PA; n=2; melanogaster subgroup|... 33 6.8
UniRef50_Q7RQP7 Cluster: Putative uncharacterized protein PY0104... 33 6.8
UniRef50_Q7RNH1 Cluster: Putative uncharacterized protein PY0184... 33 6.8
UniRef50_Q7RJW8 Cluster: Putative uncharacterized protein PY0313... 33 6.8
UniRef50_Q7RJV0 Cluster: CCAAT-box DNA binding protein subunit B... 33 6.8
UniRef50_Q6LF85 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_Q5CQE0 Cluster: Uncharacterized protein; n=2; Cryptospo... 33 6.8
UniRef50_Q24CD2 Cluster: Cation channel family protein; n=1; Tet... 33 6.8
UniRef50_Q22KD8 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_A7RJW8 Cluster: Predicted protein; n=1; Nematostella ve... 33 6.8
UniRef50_A2F9I8 Cluster: Putative uncharacterized protein; n=3; ... 33 6.8
UniRef50_A2ES90 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_A0DZ20 Cluster: Chromosome undetermined scaffold_7, who... 33 6.8
UniRef50_A0DGH0 Cluster: Chromosome undetermined scaffold_5, who... 33 6.8
UniRef50_A0CR32 Cluster: Chromosome undetermined scaffold_25, wh... 33 6.8
UniRef50_UPI0000F1F30E Cluster: PREDICTED: hypothetical protein;... 33 9.0
UniRef50_UPI00006D0E10 Cluster: hypothetical protein TTHERM_0007... 33 9.0
UniRef50_UPI00006CD08D Cluster: hypothetical protein TTHERM_0019... 33 9.0
UniRef50_UPI00006CBF12 Cluster: hypothetical protein TTHERM_0030... 33 9.0
UniRef50_UPI00006CBCCC Cluster: hypothetical protein TTHERM_0014... 33 9.0
UniRef50_Q6A9T9 Cluster: DNA polymerase III epsilon subunit; n=1... 33 9.0
UniRef50_Q2GJZ1 Cluster: DNA polymerase III, epsilon subunit; n=... 33 9.0
UniRef50_Q83Z57 Cluster: Mobilization protein; n=1; Campylobacte... 33 9.0
UniRef50_Q1VQE8 Cluster: Sensor protein; n=1; Psychroflexus torq... 33 9.0
UniRef50_A7FVV5 Cluster: Exonuclease family protein; n=4; Clostr... 33 9.0
UniRef50_Q8II63 Cluster: N-acetyl glucosamine phosphate mutase, ... 33 9.0
UniRef50_Q8IB33 Cluster: Putative uncharacterized protein MAL8P1... 33 9.0
UniRef50_Q7RM48 Cluster: Chloroquine resistance marker protein; ... 33 9.0
UniRef50_Q7RF48 Cluster: Putative uncharacterized protein PY0486... 33 9.0
UniRef50_Q61X72 Cluster: Major sperm protein; n=1; Caenorhabditi... 33 9.0
UniRef50_Q55D20 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_Q4YQB9 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_Q22P78 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_Q20940 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_Q20179 Cluster: Putative uncharacterized protein; n=2; ... 33 9.0
UniRef50_A5K504 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_A2EY81 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_A2EVM4 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_A2E0A7 Cluster: Putative uncharacterized protein; n=1; ... 33 9.0
UniRef50_A2DUI3 Cluster: Viral A-type inclusion protein, putativ... 33 9.0
UniRef50_A2DKP8 Cluster: Viral A-type inclusion protein, putativ... 33 9.0
UniRef50_A0EEV9 Cluster: Chromosome undetermined scaffold_92, wh... 33 9.0
UniRef50_A0DZZ0 Cluster: Chromosome undetermined scaffold_70, wh... 33 9.0
UniRef50_Q5UQF8 Cluster: Uncharacterized protein L488; n=1; Acan... 33 9.0
UniRef50_Q06440 Cluster: Coronin-like protein; n=7; Saccharomyce... 33 9.0
>UniRef50_UPI0000D55BE7 Cluster: PREDICTED: similar to CG3165-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG3165-PA - Tribolium castaneum
Length = 319
Score = 153 bits (370), Expect = 7e-36
Identities = 100/295 (33%), Positives = 147/295 (49%), Gaps = 15/295 (5%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
M +I T+VF D+ETTGLP E NKT+ITELC ++V D +++ KLS NP K
Sbjct: 28 MSQIKTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNPMK 87
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRA-NAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
I P+ LTGL+N+ L+ +F A + I +L KPICLVAHNGN FDY IL AE
Sbjct: 88 MISPEATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILRAE 147
Query: 120 CNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWE 179
LP D+LC+DSL FR I L+ K E+ + + E
Sbjct: 148 VEKTRNKLPEDILCLDSLNAFRSI-------DTLEAEAVKQPPKGEI---PFEFNDGYDE 197
Query: 180 EIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKK 239
+ + K + E+ +K N+ QK +T+ I+ + K
Sbjct: 198 LLSQAVDEYEKQMKLTPEQVQKINETTPQKQKICSTTGNGGPGASTKRNFGHIREFVSYK 257
Query: 240 REFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWADESCKTIHQI 294
L +YKRL K+ ++AH AE D +L+ C ++F+ +A+++ K + +I
Sbjct: 258 ----LEDVYKRLTSKEPISAHEAEGDVTMLVTCAAVYGEKFVKYANDNSKRLSEI 308
>UniRef50_UPI00015B57E4 Cluster: PREDICTED: similar to three prime
repair exonuclease 1, putative; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to three prime
repair exonuclease 1, putative - Nasonia vitripennis
Length = 325
Score = 133 bits (321), Expect = 6e-30
Identities = 91/316 (28%), Positives = 155/316 (49%), Gaps = 25/316 (7%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDL--DIQS--GLPPIK-KLSFVLN 57
+I T+VFFD+ET+ L + +ITEL +A R+ L D++ LP I KL+ +
Sbjct: 11 KIDTFVFFDLETSDL-IKGHRMPRITELSMVATDRNSLKNDMRDKLALPRIMHKLTIPIC 69
Query: 58 PEKKIHPDVVVLTGLTNESLKNAPTF-KQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
P IH + + L N+SL++ F K N I+ F+N LP IC VAHNGN FDY +
Sbjct: 70 PNAPIHQEASFASNLWNDSLEHFKPFDKDTYNMIMLFINRLPGVICFVAHNGNRFDYPVF 129
Query: 117 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKS-------LPLKMNTSKDDSASELLWP 169
L+E + + P +LC+D+LI F++ Q + +P+ ++ ++ +L
Sbjct: 130 LSEIDKLQMTFPDRILCVDTLIAFKEFFSDAQPANMPPIPVVPIGVDEVDEEELEQLSKQ 189
Query: 170 ELDVSTEN-WEE-----IDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDL 223
+ + S ++ W + +D L +KD+ D+ TN K+ K+
Sbjct: 190 DPNASLDDEWNDSLCSVVDELEKVRTKDSVRTSLSCGNGKDV-LDAITNKKQQADGKSSG 248
Query: 224 TT----QDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDE 279
+T +S+ N+ T + + LY ++ +A N H AE DC+ ++ CV +
Sbjct: 249 STTPKSSPKSMQAVNEKTPENQIIKNSLYSHMIGCEAKNLHSAEGDCISMLTCVCQMGPH 308
Query: 280 FLTWADESCKTIHQIK 295
F WAD + +++ K
Sbjct: 309 FAQWADYNAVSLNLFK 324
>UniRef50_Q5TQT2 Cluster: ENSANGP00000026876; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000026876 - Anopheles gambiae
str. PEST
Length = 322
Score = 119 bits (287), Expect = 8e-26
Identities = 73/179 (40%), Positives = 94/179 (52%), Gaps = 4/179 (2%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPP--IKKLSFVLNP 58
MV + ++VFFD+ETTGLP E +TKITEL +A +R+ L S PP KLS NP
Sbjct: 1 MVELKSFVFFDLETTGLPEYEHFRTKITELSMVACAREHLLEASTEPPRVTHKLSLCFNP 60
Query: 59 EKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVS-FLNELPKPICLVAHNGNSFDYKILL 117
+ I TGL N+ L+ F A +V FL L KP+CLVAHNG FD+ +L
Sbjct: 61 HRMITLGSSQATGLYNDLLEKEAKFDANAGEMVKLFLERLQKPVCLVAHNGQRFDFILLK 120
Query: 118 AECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTE 176
+ LP DL C+DSL FR+I +S + N D EL + L V E
Sbjct: 121 QHLLRIDVALPGDLYCVDSLPAFREIEADVDRSY-FENNEGLDSEIPELEYQALRVMEE 178
Score = 36.3 bits (80), Expect = 0.96
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 239 KREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFL 281
K+ F L+ LY+R + K+ + AH AE D + L++C + F+
Sbjct: 280 KKRFNLSELYRRTVGKELLKAHCAEADVLALMDCAIVHSARFV 322
>UniRef50_Q9VQJ7 Cluster: CG3165-PA; n=2; Sophophora|Rep: CG3165-PA
- Drosophila melanogaster (Fruit fly)
Length = 351
Score = 115 bits (277), Expect = 1e-24
Identities = 97/326 (29%), Positives = 145/326 (44%), Gaps = 32/326 (9%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVS---------RDDLDIQSGLPP----I 49
+I+T+ D+ETT LP N+ ITELC A D D Q LP +
Sbjct: 16 KISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVL 75
Query: 50 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFK-QRANAIVSFLNELPKPICLVAHNG 108
KL+ + P + P+ +TGL+N L+ A IVSFL LP P+CLVAHNG
Sbjct: 76 HKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135
Query: 109 NSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQK-SLPLKMNTSKDDSASELL 167
FD+ IL I LP L C+DSL F +I T QK + LK+ + EL
Sbjct: 136 WGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELK 195
Query: 168 WPELDVST--ENWEEIDNLCASFSKDTCIDD---------EKSKKENDLNQQKCTNLKKG 216
P+ + T + E + N+ +T + K K D ++
Sbjct: 196 -PKQNTETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEEQTPP 254
Query: 217 RKNKNDLTTQDQSLS----IQNKSTKKR-EFTLTGLYKRLLDKDAVNAHRAEDDCVILIE 271
++ ++ ++ Q S +NK R + L LY R+ A++AH+AE D V+ +
Sbjct: 255 KRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPALSAHQAEADVVMTTK 314
Query: 272 CVLALRDEFLTWADESCKTIHQIKPL 297
+ +FL +A+E Q+ PL
Sbjct: 315 LIQHYGIDFLAFAEEQAIPFQQVVPL 340
>UniRef50_Q0C7B5 Cluster: Three prime repair exonuclease 1,
putative; n=1; Aedes aegypti|Rep: Three prime repair
exonuclease 1, putative - Aedes aegypti (Yellowfever
mosquito)
Length = 320
Score = 113 bits (273), Expect = 4e-24
Identities = 100/314 (31%), Positives = 153/314 (48%), Gaps = 37/314 (11%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDL-DIQSGLPP--IKKLSFVLNPE 59
++ ++VFFD+ETT L + KITE+ +A SR L D + G P + K +F LNP+
Sbjct: 4 QLGSFVFFDLETTDLIGIKT--PKITEISLIACSRKHLLDTKRGELPRVLHKQTFCLNPQ 61
Query: 60 KKIHPDVVVLTGLTNESLKNAPTFKQR-ANAIVSFLNELPKPICLVAHNGNSFDYKILLA 118
+ IHP TGL N+ L++ F + A IV FL L P CLVAHNGN FD+ IL
Sbjct: 62 RMIHPRASETTGLYNDLLEDESKFDENTAQLIVLFLRRLQAPTCLVAHNGNRFDFVILKK 121
Query: 119 ECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVST--E 176
E LP D C+DSL F+ + + ++ K +++++ +EL EL T E
Sbjct: 122 ELESLNAQLPDDTYCVDSLPLFQALEQAREQ----KAKAAQENADNELADLELCALTAME 177
Query: 177 NWEEIDNLCASFSKDTCIDDEKSK-KEN---------DLNQQKCTNLKKGR---KNKNDL 223
E + + K ++ K EN D+ + + R ++K L
Sbjct: 178 ELEGSPSTLSLMQKRNETTPQRGKITENYKRALRSYLDITPSQDGTSSQRRSPPRSKRQL 237
Query: 224 TTQDQSL-----------SIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVILIEC 272
D+S+ + KS KKR F L +++RLL + +H AE D L++C
Sbjct: 238 FPDDKSVMDPSSGADTPTTSSQKSAKKR-FRLCDVHERLLGQAPKISHYAECDVKALLKC 296
Query: 273 VLALRDEFLTWADE 286
+A +F+ +ADE
Sbjct: 297 AIAEGPDFVAYADE 310
>UniRef50_UPI000069F3E4 Cluster: UPI000069F3E4 related cluster; n=1;
Xenopus tropicalis|Rep: UPI000069F3E4 UniRef100 entry -
Xenopus tropicalis
Length = 228
Score = 95.1 bits (226), Expect = 2e-18
Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 13/150 (8%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLD------IQSGLPPI-KKLSFVL 56
+ ++VF D+E TGL + N KITELC +AV L+ + LP + KL +
Sbjct: 5 VKSFVFLDLEATGLNY---NLPKITELCLVAVHVSSLENPETDQSEVQLPRVLDKLCLCV 61
Query: 57 NPEKKIHPDVVVLTGLTNESLKNA--PTFKQRANAIVS-FLNELPKPICLVAHNGNSFDY 113
+P+K I + +TGL+NE L N P F +V FLN +P+CLVAHNG +D+
Sbjct: 62 DPKKPITKEACNITGLSNEKLANCEKPCFNLNLVQLVKEFLNRQAQPVCLVAHNGLFYDF 121
Query: 114 KILLAECNDAGILLPSDLLCIDSLIGFRKI 143
+L AE LP LLC+DSL FR++
Sbjct: 122 PLLKAEFQQQNEELPGSLLCLDSLKAFRQL 151
Score = 38.7 bits (86), Expect = 0.18
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 239 KREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWADESCKTIHQIKPL 297
K TLT LY+R K+ +++H AE D + LI+ + E L A+ K +I P+
Sbjct: 163 KGSHTLTELYRRSFGKEPIDSHYAEGDVLTLIKVFMYKASELLEMANSLYKRWSEINPM 221
>UniRef50_Q6QH49 Cluster: 3' repair exonuclease; n=4;
Nucleopolyhedrovirus|Rep: 3' repair exonuclease -
Anticarsia gemmatalis nuclear polyhedrosis virus
(AgMNPV)
Length = 230
Score = 93.5 bits (222), Expect = 6e-18
Identities = 61/170 (35%), Positives = 86/170 (50%), Gaps = 8/170 (4%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
M + TYVF D+ETTGLP + ++T+ITEL V+R++L KL+ P
Sbjct: 1 MAVVKTYVFLDLETTGLPKLQNDQTQITELSLQCVTREEL--LGAARVCNKLTLCFEPTV 58
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIV-SFLNELPKPICLVAHNGNSFDYKILLAE 119
I LT L E+L+ P F +RA A++ SFL L P+CLVA+NG +FD+ IL
Sbjct: 59 PISEQASALTQLNAENLRGQPLFDKRAVALIESFLALLSPPVCLVAYNGFAFDFPILYKH 118
Query: 120 CNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWP 169
D G S + C D+ + + S P M SK + + L P
Sbjct: 119 LKDNG--FASAVQCADA---YHALFAILDGSGPPTMKRSKSGTVTVKLCP 163
Score = 42.7 bits (96), Expect = 0.011
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 233 QNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWAD-ESCK 289
Q + K+ + L LYKR + + + HRAEDDC ++++ V EF+ W D +CK
Sbjct: 165 QRGARPKQSYKLVDLYKRHVGGN-LKGHRAEDDCAMMMQLVQKHAAEFVNWVDGNNCK 221
>UniRef50_A7SCZ1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 201
Score = 92.3 bits (219), Expect = 1e-17
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDL--DIQSGLPP--IKKLSFVLNPEKK 61
T++F D+ETTGL R +ITE+C +AV +D L ++ P I KLS + P +
Sbjct: 1 TFIFLDLETTGL----RRPIEITEICLIAVQKDHLLRAAETKTEPRLIDKLSICVKPVQN 56
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQR-ANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
I +TG+ L F ++ A I +FL P P CLVAH+G+ FD+ IL +E
Sbjct: 57 IECGASSITGINKMDLAEKREFDRKLAKVIKTFLRRQPSPSCLVAHSGDRFDFDILASEF 116
Query: 121 NDAGILLPSDLLCIDSLIGFRKI 143
+AG+ PS++ DS FRK+
Sbjct: 117 VNAGVKFPSEIQAADSWKAFRKL 139
>UniRef50_Q9NSU2 Cluster: Three prime repair exonuclease 1; n=17;
Theria|Rep: Three prime repair exonuclease 1 - Homo
sapiens (Human)
Length = 369
Score = 85.4 bits (202), Expect = 2e-15
Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 18/160 (11%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLD---IQSGLPP--------IKKLSF 54
T +FFD+E TGLPF + K+TELC LAV R L+ G PP + KLS
Sbjct: 68 TLIFFDMEATGLPFSQ---PKVTELCLLAVHRCALESPPTSQGPPPTVPPPPRVVDKLSL 124
Query: 55 VLNPEKKIHPDVVVLTGLTNESLK--NAPTFKQR-ANAIVSFLNELPKPICLVAHNGNSF 111
+ P K P +TGL+ L F AN +++FL P+P CLVAHNG+ +
Sbjct: 125 CVAPGKACSPAASEITGLSTAVLAAHGRQCFDDNLANLLLAFLRRQPQPWCLVAHNGDRY 184
Query: 112 DYKILLAECNDAGILLPSD-LLCIDSLIGFRKILKTTQKS 150
D+ +L AE G+ D C+DS+ + + + + S
Sbjct: 185 DFPLLQAELAMLGLTSALDGAFCVDSITALKALERASSPS 224
>UniRef50_Q9BQ50 Cluster: Three prime repair exonuclease 2; n=16;
Mammalia|Rep: Three prime repair exonuclease 2 - Homo
sapiens (Human)
Length = 279
Score = 79.8 bits (188), Expect = 8e-14
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDI----QSG---LPPI-KKLSF 54
R T+VF D+E TGLP E +I EL AV R L+ +SG LP + KL+
Sbjct: 49 RAETFVFLDLEATGLPSVE---PEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTL 105
Query: 55 VLNPEKKIHPDVVVLTGLTNESL---KNAPTFKQRANAIVSFLNELPKPICLVAHNGNSF 111
+ PE+ +TGL++E L + A + +FL+ PICLVAHNG +
Sbjct: 106 CMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDY 165
Query: 112 DYKILLAECNDAGILLPSDLLCIDSLIGFR 141
D+ +L AE G LP D +C+D+L R
Sbjct: 166 DFPLLCAELRRLGARLPRDTVCLDTLPALR 195
Score = 35.1 bits (77), Expect = 2.2
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 227 DQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWADE 286
D++ S ++ ++ ++L L+ R + AH AE D L+ L E L WADE
Sbjct: 198 DRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAAHSAEGDVHTLLLIFLHRAAELLAWADE 257
Query: 287 SCKTIHQIKPL 297
+ I+P+
Sbjct: 258 QARGWAHIEPM 268
>UniRef50_UPI0000E46C7F Cluster: PREDICTED: similar to Three prime
repair exonuclease 1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to Three prime repair
exonuclease 1 - Strongylocentrotus purpuratus
Length = 438
Score = 69.7 bits (163), Expect = 8e-11
Identities = 68/197 (34%), Positives = 96/197 (48%), Gaps = 29/197 (14%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDL---DIQSGLP------------- 47
I ++VF D ET+ L R++ KI EL +AV+R L D+ + L
Sbjct: 9 INSFVFLDFETSHLI--PRDRPKIIELSLIAVNRTGLLNSDVHTALNCARKENFTFDLSK 66
Query: 48 ---P--IKKLSFVLNPEKKIHPDVVVLTGLTNESL-KNAPT-FKQRANAIVS-FLNELPK 99
P I KL+ ++P K P LT L +L KN F + A+++ FL+
Sbjct: 67 VTLPRIIDKLTLCVDPRKDTSPQSAELTKLDKHNLDKNKKLPFDEDVIAMLNIFLSRQEA 126
Query: 100 PICLVAHNGNSFDYKILLAECNDAGILLP-SDLLCIDSLIGFRKILKTTQKSLPLKMNTS 158
P+CLVAHNG FD+ IL +E + P +DL C+DSL GFR TT+K K
Sbjct: 127 PVCLVAHNGMRFDFAILRSELSQLTTGDPLADLYCVDSLSGFRAGF-TTEKQGERKQREG 185
Query: 159 KDDSASELL-WPELDVS 174
K+ S + PE D+S
Sbjct: 186 KNKQESTWMPSPEPDLS 202
Score = 39.5 bits (88), Expect = 0.10
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 242 FTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWADE 286
++L ++KR D ++H AE D + LI+ +L EF++WAD+
Sbjct: 370 YSLVNIFKRTFGTDPPHSHSAEGDVMSLIKVLLPRMSEFVSWADK 414
>UniRef50_UPI0000E49E75 Cluster: PREDICTED: similar to three prime
repair exonuclease 1, putative; n=2; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to three prime repair
exonuclease 1, putative - Strongylocentrotus purpuratus
Length = 534
Score = 66.9 bits (156), Expect = 6e-10
Identities = 67/201 (33%), Positives = 93/201 (46%), Gaps = 33/201 (16%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDL---DIQSGLP------------- 47
I ++VF D ET+ L ++ KI EL +AV+R+ L D+ + L
Sbjct: 119 INSFVFLDFETSHL--LSKDHPKIIELSLIAVNRNGLLNSDVHTSLNCARKGNFTFDLSK 176
Query: 48 ---P--IKKLSFVLNPEKKIHPDVVVLTGLTNESL---KNAPTFKQRANAIVSFLNELPK 99
P I KL+ ++P K P +T L +L K P + I FL+
Sbjct: 177 VSLPRIIDKLTLCVDPRKSTSPQSARITKLDKRNLDKNKKLPFDEDVICMIKLFLSRQEA 236
Query: 100 PICLVAHNGNSFDYKILLAECNDAGI-LLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS 158
P+CLVAHNG FD+ IL +E + L +DL C+DSL GFR TT+K K
Sbjct: 237 PVCLVAHNGLRFDFAILRSELSRMTTGDLSADLYCVDSLSGFRAGF-TTEKQGERKQREG 295
Query: 159 KDDSASELLW---PELDVSTE 176
K + E W PE D+S E
Sbjct: 296 K--NKQEPTWMPSPEPDLSLE 314
Score = 39.5 bits (88), Expect = 0.10
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 242 FTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWADE 286
++L ++KR D ++H AE D + LI+ +L EF++WAD+
Sbjct: 447 YSLVNIFKRTFGTDPPHSHSAEGDVMSLIKVLLPRMSEFVSWADK 491
>UniRef50_A0LZ46 Cluster: Exonuclease family protein; n=10;
Flavobacteria|Rep: Exonuclease family protein - Gramella
forsetii (strain KT0803)
Length = 457
Score = 65.7 bits (153), Expect = 1e-09
Identities = 48/127 (37%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG + E T+I A+ + D G + + ++NPE+ I P V
Sbjct: 2 YAILDIETTGGKYNEEGITEI------AIYKFD-----GQKVVDQFISLVNPEQPIQPFV 50
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
V LTG+ N+ LKNAP F + A IV E+ + LVAHN FDY+IL E G
Sbjct: 51 VNLTGINNDMLKNAPKFYEVAKRIV----EITEDCILVAHNA-KFDYRILRTEFRRLGFE 105
Query: 127 LPSDLLC 133
LC
Sbjct: 106 YERKSLC 112
>UniRef50_A6ESS3 Cluster: DNA polymerase III, epsilon subunit; n=1;
unidentified eubacterium SCB49|Rep: DNA polymerase III,
epsilon subunit - unidentified eubacterium SCB49
Length = 460
Score = 64.9 bits (151), Expect = 2e-09
Identities = 48/127 (37%), Positives = 64/127 (50%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG + E T+I A+ R D G + + ++NPE+ I P V
Sbjct: 3 YAILDIETTGGKYNEEGITEI------AIYRFD-----GEKVVDQFCSLVNPERPIQPFV 51
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
V LTG+ ++ LKNAP F + A IV E+ K LVAHN FD +IL E + G
Sbjct: 52 VNLTGINSDMLKNAPKFYEVAKRIV----EITKDCILVAHNA-QFDNRILTTEFDRLGYD 106
Query: 127 LPSDLLC 133
+ LC
Sbjct: 107 FDLETLC 113
>UniRef50_A4C086 Cluster: DNA polymerase III subunit; n=2;
Polaribacter|Rep: DNA polymerase III subunit -
Polaribacter irgensii 23-P
Length = 361
Score = 64.5 bits (150), Expect = 3e-09
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG F E T+I A+ + D G + + ++NPEK+I V
Sbjct: 2 YAILDIETTGGKFNEEGITEI------AIYKFD-----GHSVVDQFISLVNPEKEIQQFV 50
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
V LTG+ N+ L++AP F + A I+ E+ K LVAHN +FDY+IL E + G
Sbjct: 51 VRLTGINNKMLRSAPKFYEIAKRII----EITKDCTLVAHN-TTFDYRILSTEFDRLGYD 105
Query: 127 LPSDLLC 133
+ LC
Sbjct: 106 FNRNTLC 112
>UniRef50_A6DIP6 Cluster: Exonuclease; n=1; Lentisphaera araneosa
HTCC2155|Rep: Exonuclease - Lentisphaera araneosa
HTCC2155
Length = 261
Score = 60.5 bits (140), Expect = 5e-08
Identities = 45/119 (37%), Positives = 61/119 (51%), Gaps = 17/119 (14%)
Query: 8 VFFDIETTGL-PFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
VFFD+ETTGL P ++R I E+C + V D G IK +NPEK I +
Sbjct: 10 VFFDLETTGLNPTEDR----IIEICCIKVHPD------GKRDIKTRR--VNPEKPISSEA 57
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
+TG+T+E +K+ PTFKQ A I F + +N FD ++L E AGI
Sbjct: 58 SEITGITDEDVKDEPTFKQMAKGIYKFFEGCD----ISGYNIMRFDLRVLTEEFKRAGI 112
>UniRef50_A4CLT9 Cluster: Putative uncharacterized protein; n=1;
Robiginitalea biformata HTCC2501|Rep: Putative
uncharacterized protein - Robiginitalea biformata
HTCC2501
Length = 375
Score = 60.5 bits (140), Expect = 5e-08
Identities = 47/128 (36%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
TY DIETTG F E T+I A+ R D G + ++NPE+ I P
Sbjct: 2 TYAVLDIETTGGKFDEEGITEI------AIHRFD-----GHEVVDTFISLINPERPIQPY 50
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
V LTG+ + ++ AP F Q A IV E+ + LVAHN FDY+IL E G
Sbjct: 51 VQKLTGIDPKMVQTAPRFHQVAKRIV----EITRDSVLVAHNA-QFDYRILRTEFRRLGY 105
Query: 126 LLPSDLLC 133
LC
Sbjct: 106 NFERKTLC 113
>UniRef50_Q934V3 Cluster: Putative uncharacterized protein
HCM2.0114c; n=1; Salmonella typhi|Rep: Putative
uncharacterized protein HCM2.0114c - Salmonella typhi
Length = 185
Score = 58.0 bits (134), Expect = 3e-07
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 12/128 (9%)
Query: 11 DIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLT 70
DIE+TGL F +K I E+ A++R +L+ Q I L NP + I P +
Sbjct: 9 DIESTGLDFTSGHK--IIEI---AITRYELETQKH---IDSLEMRFNPRRSIDPKAQAVH 60
Query: 71 GLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPSD 130
G++ E L P A I +++ LVAHNG +FD + E G+ LP D
Sbjct: 61 GISLEDLATEPLLADHAGKIAAYMGACS---ALVAHNGEAFDLPFIRHEFGSYGVKLP-D 116
Query: 131 LLCIDSLI 138
+ +DS++
Sbjct: 117 IPLVDSML 124
>UniRef50_A5FIG6 Cluster: DNA polymerase III, epsilon subunit; n=1;
Flavobacterium johnsoniae UW101|Rep: DNA polymerase III,
epsilon subunit - Flavobacterium johnsoniae UW101
Length = 459
Score = 55.2 bits (127), Expect = 2e-06
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG + ++ITE+ + I G + + ++NPE+ I P +
Sbjct: 6 YAIVDIETTG---GNASGSRITEIAII--------IHDGKNVLDRYETLVNPEQDIPPSI 54
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+ NE + NAP F + ++ L + VAHN N FDY + + AG
Sbjct: 55 FGLTGINNEMVANAPIFDDISEKVLEMLTDR----IFVAHNVN-FDYSFVHHQLEQAGFK 109
Query: 127 LPSDLLC 133
+ LC
Sbjct: 110 WSAKKLC 116
>UniRef50_A4BWD8 Cluster: DNA polymerase III, epsilon subunit; n=3;
Flavobacteriales|Rep: DNA polymerase III, epsilon
subunit - Polaribacter irgensii 23-P
Length = 462
Score = 55.2 bits (127), Expect = 2e-06
Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 18/138 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG + + T+I+ L F G + + + ++NPE+ I +
Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIF-----------DGKKIVDEFTSLVNPEQNIPAFI 51
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+TN ++NAP F + A + E+ + VAHN N FDY I+ AE G
Sbjct: 52 TSLTGITNAMVRNAPRFFEIAKKVA----EITENTIFVAHNVN-FDYNIIQAEFKSLGFD 106
Query: 127 LPSDLLCIDSLIGFRKIL 144
LC L RKI+
Sbjct: 107 FKRKKLCTIRLT--RKII 122
>UniRef50_A2TNW8 Cluster: DNA polymerase III, epsilon subunit; n=1;
Dokdonia donghaensis MED134|Rep: DNA polymerase III,
epsilon subunit - Dokdonia donghaensis MED134
Length = 466
Score = 55.2 bits (127), Expect = 2e-06
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 16/129 (12%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T + D+ETTG N +ITE C AV D +I I K + ++NPE+ I P
Sbjct: 7 TYHCIIDVETTGKGI---NGNRITEFC--AVRLKDGEI------IDKFTSLVNPEQYIPP 55
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ LTG+ + +++AP F++ A ++ E+ + VAHN N FD+ ++ E G
Sbjct: 56 FITNLTGIDDAMVEDAPLFEEIAQRVL----EITEGAIFVAHNVN-FDFNVIKGEFKRLG 110
Query: 125 ILLPSDLLC 133
+ LC
Sbjct: 111 VSFVRKKLC 119
>UniRef50_Q895K2 Cluster: DNA polymerase III polC-type; n=14;
Clostridia|Rep: DNA polymerase III polC-type -
Clostridium tetani
Length = 1427
Score = 55.2 bits (127), Expect = 2e-06
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
+YV FDIETTG F +N KI E+ + + + + K S +NPE+ I
Sbjct: 412 SYVVFDIETTG--FSNKND-KIIEIGAVKIKEGKV--------VDKYSTFVNPERIIPEK 460
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
++ LTG+ + +K+AP ++ + F+ + LVAHN N FD + C D GI
Sbjct: 461 IIELTGIHDYMVKDAPKIEEVLPKFIDFIED----SILVAHNAN-FDVSFIKKNCKDFGI 515
Query: 126 LLPSDLL 132
+ +L
Sbjct: 516 HFNNPIL 522
>UniRef50_Q011G8 Cluster: DNA helicase RecG; n=2; Ostreococcus|Rep:
DNA helicase RecG - Ostreococcus tauri
Length = 1259
Score = 54.4 bits (125), Expect = 3e-06
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK-KIHPDV 66
+ FD+ETTGL + K++I EL QS P S ++NP + I P +
Sbjct: 196 IVFDLETTGL---SKEKSRIIELA----------AQSLTDPSAAFSTLVNPGRFNIPPAI 242
Query: 67 VVLTGLTNE--SLKNAPTFKQRANAIVSFLNELPK-----PICLVAHNGNSFDYKILLAE 119
LTG+TN S + P+F A F+ ++ + P+ LVAHN FD + E
Sbjct: 243 KALTGITNSMVSAPDVPSFAMAAEQFEMFIEQVRQSRPGAPVLLVAHNARQFDAAFIQYE 302
Query: 120 CNDAGILLPSDLLCIDSLIGFRKILK 145
G LPS D+L R++L+
Sbjct: 303 YRRLGRELPSSWRFCDTLPLARQLLR 328
>UniRef50_Q5DB02 Cluster: SJCHGC02520 protein; n=2; Schistosoma
japonicum|Rep: SJCHGC02520 protein - Schistosoma
japonicum (Blood fluke)
Length = 228
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 33 LAVSRDDLDIQSGLPPIK-KLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIV 91
LA SR L+ + P ++ KL+ NP + I ++GL +++L + F A ++
Sbjct: 2 LACSRFGLENATDEPRVENKLTLCFNPTRTISSIASKISGLNSDNLFHQKDFDSSAVDLI 61
Query: 92 S-FLNELPKPICLVAHNGNSFDYKILLAE 119
FLN L P+C VAHNG FD+ +L A+
Sbjct: 62 QLFLNRLDSPVCFVAHNGLRFDFPLLRAQ 90
Score = 35.1 bits (77), Expect = 2.2
Identities = 14/65 (21%), Positives = 30/65 (46%)
Query: 236 STKKREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWADESCKTIHQIK 295
+T K F L +++R+ + ++AH AE DC ++ + L + W + +
Sbjct: 126 TTNKHSFHLGDIHERVFGEKHIHAHTAEGDCRAMLRLIQYLGSPAIDWLQSHYVNFNSLT 185
Query: 296 PLIRY 300
P+ +
Sbjct: 186 PMYSF 190
>UniRef50_Q81ST0 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=10; Bacillus cereus group|Rep:
DnaQ family exonuclease/DinG family helicase, putative -
Bacillus anthracis
Length = 934
Score = 54.0 bits (124), Expect = 4e-06
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV D+ETTG +++ K KIT++ + V ++ ++ S +NP+++I P +
Sbjct: 5 YVVVDLETTGNSWKD-GKDKITQIAAVVVEDGEI--------LEIFSSFINPKREIPPFI 55
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
LTG+ +K AP F+ A +V EL + VAHN + FD+ L E AG
Sbjct: 56 TELTGIDESMVKQAPLFEDVAPMVV----ELLQGAAFVAHNVH-FDWNFLTEELRQAG 108
>UniRef50_A1ZKT0 Cluster: Exonuclease; n=1; Microscilla marina ATCC
23134|Rep: Exonuclease - Microscilla marina ATCC 23134
Length = 245
Score = 54.0 bits (124), Expect = 4e-06
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 16/129 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
VFFD+ETTG + +I ++ + ++ D ++ ++NP I P+V
Sbjct: 8 VFFDLETTGT---DTLNDRIVQIAIIKLAADGTKVEK--------ERLINPTIPIPPEVT 56
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
+ G+++E +K+APTF Q A ++ F+ + L +N +FD +L+ E AG++
Sbjct: 57 KVHGVSDEMVKDAPTFHQVAKSLFEFI----RGCDLAGYNHLNFDMPLLIEEFARAGVVF 112
Query: 128 PS-DLLCID 135
P D+ ID
Sbjct: 113 PEPDVQYID 121
>UniRef50_Q60WS9 Cluster: Putative uncharacterized protein CBG19000;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG19000 - Caenorhabditis
briggsae
Length = 392
Score = 53.6 bits (123), Expect = 6e-06
Identities = 50/217 (23%), Positives = 92/217 (42%), Gaps = 21/217 (9%)
Query: 82 TFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL----LPSDLLCIDSL 137
+FK+ A++ F N PKP LV HN +D++++ E +L +P D+ +DS
Sbjct: 188 SFKEEWPAVIQFFNSFPKPALLVGHNAIKYDFRVIYGELQRNDLLEDYGIPPDVYFVDSY 247
Query: 138 IGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDE 197
+K+ +T K L K P+ +V E++ L +T ++
Sbjct: 248 WMAKKVEETIVKELVTVCKYIKFPKI-----PKAEV-----EDVLLLAEESCNETILEPS 297
Query: 198 KSKKE---NDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDK 254
S + N L+ K + + R K + ++ K F L LY++L+
Sbjct: 298 TSADDHPANILDWDKFSVSLRKRIRKEGFVRTTNGWTYKHGDNK---FGLAALYEQLVG- 353
Query: 255 DAVNAHRAEDDCVILIECVLALRDEFLTWADESCKTI 291
+AH A+ D L+ L+ +EF + +E+ +
Sbjct: 354 GKYSAHYAQQDTEALMHVCLSYGNEFTQYLNENASAV 390
>UniRef50_A1RKY8 Cluster: DNA polymerase III, epsilon subunit; n=2;
Shewanella|Rep: DNA polymerase III, epsilon subunit -
Shewanella sp. (strain W3-18-1)
Length = 298
Score = 52.8 bits (121), Expect = 1e-05
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 15/129 (11%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T ++ D ETTGL E KI E+ + D+ S P+ ++NP K+
Sbjct: 17 TKFIALDAETTGL---EAETDKIIEIAAIK-----FDLLSNDHPV--FESLINPAVKVPR 66
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ +TG+TN+ L + P F + A + +F+ +LP +VA+N FD L AE + G
Sbjct: 67 KITNITGITNKMLVDQPPFAELAQDLKAFIGDLP----IVAYNA-KFDKGFLDAEFANVG 121
Query: 125 ILLPSDLLC 133
I+L + C
Sbjct: 122 IVLNNQYHC 130
>UniRef50_A4YW65 Cluster: Putative uncharacterized protein; n=2;
Bradyrhizobium|Rep: Putative uncharacterized protein -
Bradyrhizobium sp. (strain ORS278)
Length = 737
Score = 52.4 bits (120), Expect = 1e-05
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 16/113 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV DIETTG + +ITE+ + V L +++ ++NP++ I +
Sbjct: 563 YVVVDIETTG---SWSSGDRITEIGAVKVRNHQL--------VEQWHSLINPQRPIPAKI 611
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
V LTG+TN+ +++AP F + A++ ++F+ + VAHN N FDY L +E
Sbjct: 612 VELTGITNQMVRDAPVFHEIADSFMAFMGD----GIFVAHNVN-FDYGFLSSE 659
>UniRef50_UPI0000E47DC6 Cluster: PREDICTED: similar to 3-5
exonuclease TREX1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to 3-5 exonuclease
TREX1 - Strongylocentrotus purpuratus
Length = 241
Score = 52.0 bits (119), Expect = 2e-05
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 64 PDVVVLTGLTNESL---KNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
P+ LTGL N +L K K + + FL P+CLVAHNG FD+ +L E
Sbjct: 40 PETFGLTGLDNYNLGESKKMSLDKDIISMLNIFLKRQEGPVCLVAHNGKRFDFPMLRTEL 99
Query: 121 ND-AGILLPSDLLCIDSLIGFRKILKT-TQKSLPLK 154
+ L DL C DSL GF T T++ + LK
Sbjct: 100 SRLTAEELFEDLFCADSLEGFTSNFATETEEPISLK 135
Score = 39.5 bits (88), Expect = 0.10
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 239 KREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLALRDEFLTWAD 285
K ++L +++R ++ N H AEDD LI+ +L +EF+ WAD
Sbjct: 180 KISYSLINIFERTFGREPPNFHCAEDDVASLIKVLLPRVEEFVNWAD 226
>UniRef50_Q92AA9 Cluster: DinG protein; n=13; Listeria|Rep: DinG
protein - Listeria innocua
Length = 928
Score = 52.0 bits (119), Expect = 2e-05
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y+ D+ETTG ++ CF ++SG ++ S LNPEK I +
Sbjct: 6 YIVVDLETTGNQASREDRIIQFAACF---------VESG-KRLETYSTFLNPEKPIPAFI 55
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG++ + +KNAP F+ A I S L + VAHN SFD+ L E AGI
Sbjct: 56 QELTGISPKDVKNAPLFEDVAPIIASLLED----TIFVAHN-VSFDWTFLEREMTRAGIS 110
Query: 127 L 127
L
Sbjct: 111 L 111
>UniRef50_Q8EUK5 Cluster: DNA polymerase III subunit alpha; n=1;
Mycoplasma penetrans|Rep: DNA polymerase III subunit
alpha - Mycoplasma penetrans
Length = 1458
Score = 52.0 bits (119), Expect = 2e-05
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 6 TYVFFDIETTGL-PFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
TYV FDIETTGL P+ + KI E F A+ G+ ++ + +NPE+KI
Sbjct: 420 TYVIFDIETTGLSPYYD----KIIE--FGAIK-----YHKGVQ-VESIQMFINPEEKISD 467
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+ +T ++NE +K+A K+ I F+ + L+AHNG FD L
Sbjct: 468 KIFAITKISNEDVKDALKIKEALVKIKDFIGD----SVLIAHNGIKFDLPFL 515
>UniRef50_Q63RW4 Cluster: Possible DNA polymerase/helicase; n=27;
Burkholderia|Rep: Possible DNA polymerase/helicase -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 381
Score = 51.2 bits (117), Expect = 3e-05
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 17/129 (13%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T F D+ETTG E +ITE+ + V+ + + L ++P++ I P
Sbjct: 13 TPLAFVDLETTGGSAAEH---RITEIGVVVVNANGTSTWTTL---------VDPQQPIPP 60
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ LTG+T+ ++ APTF A A+ L+ VAHN SFD L AE AG
Sbjct: 61 FIQQLTGITDAMVRGAPTFADIAGALFERLDGK----LFVAHNA-SFDRGFLRAEFERAG 115
Query: 125 ILLPSDLLC 133
I D+LC
Sbjct: 116 IAFNPDVLC 124
>UniRef50_Q0LKH2 Cluster: DNA polymerase III, epsilon subunit; n=1;
Herpetosiphon aurantiacus ATCC 23779|Rep: DNA polymerase
III, epsilon subunit - Herpetosiphon aurantiacus ATCC
23779
Length = 282
Score = 50.8 bits (116), Expect = 4e-05
Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 16/145 (11%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V FD+E+TGL Q ++ +C +A R IQ G I + F++NP+++I P
Sbjct: 26 FVLFDMESTGLDVQIGHR-----ICEMAAMR----IQ-GREIIDRCEFLVNPQREIDPAA 75
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
+ G++ E + NAP+F + I +N+L LVAHN FD L +E + L
Sbjct: 76 FAVNGISAEMVANAPSFGE----IWPKVNKLFHEAVLVAHNA-YFDIGFLTSELSRID-L 129
Query: 127 LPSDLLCIDSLIGFRKILKTTQKSL 151
P + ID+L R+ + + +L
Sbjct: 130 PPLETPVIDTLALARRYITARRYNL 154
>UniRef50_A5VK04 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=2; Lactobacillus reuteri|Rep: DnaQ
family exonuclease/DinG family helicase, putative -
Lactobacillus reuteri F275
Length = 954
Score = 50.8 bits (116), Expect = 4e-05
Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NP +KI +V LTG+ ++ ++ AP F+ A I S L E VAHN N FD+
Sbjct: 58 INPREKIPRSIVQLTGIEDKDVRKAPLFEDIAGTIYSLLAE----TTFVAHNVN-FDFPF 112
Query: 116 LLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS 158
L AE AG PS + + +IL T KS L+ TS
Sbjct: 113 LNAELERAG--YPSLSIPAIDTVTLSQILLPTAKSFRLRDLTS 153
>UniRef50_A3UIB9 Cluster: DNA polymerase III, epsilon subunit; n=6;
Alphaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Oceanicaulis alexandrii HTCC2633
Length = 236
Score = 50.8 bits (116), Expect = 4e-05
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ FD ETTGL R ++TEL + V +D+ +P K L ++NPE+ I +V
Sbjct: 6 IIFDTETTGL--DPRGGDRVTELGCVEV----IDL---IPTGKDLRILINPERDIPAEVT 56
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+TG T E LK+ P F + + + F+ + LVAHN FD + E G
Sbjct: 57 AVTGHTWEMLKDEPKFAEIVDQFLDFIED----STLVAHNA-MFDMGFINMELERCG 108
>UniRef50_Q26FQ2 Cluster: DNA polymerase III, epsilon subunit; n=1;
Flavobacteria bacterium BBFL7|Rep: DNA polymerase III,
epsilon subunit - Flavobacteria bacterium BBFL7
Length = 466
Score = 50.4 bits (115), Expect = 6e-05
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG ++TE+C + + D + + K S +++PE I +
Sbjct: 8 YCVVDIETTG---NRMTGNRMTEICIVRMRGDTI--------LDKYSSLIDPEVLIPDYI 56
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
LTG+ N + +AP F A I++F K VAHN N FDY +L E
Sbjct: 57 TTLTGIDNAMVASAPVFADVAEEILNF----TKDYIFVAHNVN-FDYNVLRNE 104
>UniRef50_Q1ART4 Cluster: DNA polymerase III, epsilon subunit; n=1;
Rubrobacter xylanophilus DSM 9941|Rep: DNA polymerase
III, epsilon subunit - Rubrobacter xylanophilus (strain
DSM 9941 / NBRC 16129)
Length = 560
Score = 50.0 bits (114), Expect = 7e-05
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 61
+R YV FD+ETTG +E ITEL L + R + + + S ++NP +
Sbjct: 28 LREAPYVVFDLETTGSSAREGG---ITELGALKLVRGRV--------VDRFSTLVNPGRP 76
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 121
I P V LTG+T+E + AP A ++ E + LVAHN FD L A
Sbjct: 77 IEPFVARLTGITDEMVSGAPP----AREVIPRFEEFAEGSVLVAHNA-GFDCSFLAAARG 131
Query: 122 DAGILLP 128
G+ P
Sbjct: 132 GRGLPNP 138
>UniRef50_Q3SKJ9 Cluster: DNA polymerase III, epsilon subunit; n=3;
Betaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Thiobacillus denitrificans (strain ATCC 25259)
Length = 470
Score = 49.6 bits (113), Expect = 1e-04
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 9 FFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVV 68
F D+ETTG + ++TE+ + V D ++ S L +NPE+ I +
Sbjct: 12 FVDLETTGA---NAARDRVTEIGVVVVDGDRVETWSTL---------VNPERAIPQFIQQ 59
Query: 69 LTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLP 128
LTG++NE + +APTF + A+ + L+ +AHN FDY L E G
Sbjct: 60 LTGISNEMVADAPTFARVADELAERLDGR----LFIAHNAR-FDYGFLKHEYQRLGRRFR 114
Query: 129 SDLLC 133
+D+LC
Sbjct: 115 ADVLC 119
>UniRef50_A7A526 Cluster: Putative uncharacterized protein; n=1;
Bifidobacterium adolescentis L2-32|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
L2-32
Length = 256
Score = 49.6 bits (113), Expect = 1e-04
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 63
+ Y D+ETTG + +I E+ + V ++G P +K+ S ++NP++ +
Sbjct: 83 VDNYTSIDLETTGF---SPSDDRIVEIGAIRV-------RNGRP-VKRYSQLINPQRPLP 131
Query: 64 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 123
++ L GLT+ L+N PT Q + F+ L+ HN N FD LLA
Sbjct: 132 EEITRLNGLTDADLRNQPTVDQVLPDFIRFIGN----DTLIGHNINEFDAAFLLANTTRL 187
Query: 124 GI 125
G+
Sbjct: 188 GM 189
>UniRef50_A5F9M6 Cluster: DNA polymerase III, epsilon subunit
related exonuclease; n=1; Clostridium kluyveri DSM
555|Rep: DNA polymerase III, epsilon subunit related
exonuclease - Clostridium kluyveri DSM 555
Length = 441
Score = 49.2 bits (112), Expect = 1e-04
Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 25/222 (11%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V D+ETTGL E + I E+ +++ I + ++NPE I P++
Sbjct: 131 FVVVDLETTGL---EPTRDYIIEIAAAKYENNEI--------IDTYTTLVNPEVFIPPNI 179
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
+ + N+ +K+ P K+ ++F+ +LP LVAHN FD K L A G+
Sbjct: 180 TNINHIDNDMVKDCPEIKEVLPGFMNFIGQLP----LVAHNA-PFDIKFLNANLALLGLY 234
Query: 127 LPSDLLCIDSLIGFRKILKTTQ--KSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNL 184
L + + ID+L RK+ + K +K + D S P+ V + + E
Sbjct: 235 LNNPI--IDTLPISRKLFSEIENHKLGTIKEYLNIDVQDSHRALPDCYVCGQIYLEYS-- 290
Query: 185 CASFSKDTCIDDEKSKKENDLNQQKCTNLKKG--RKNKNDLT 224
+ + K + LN+++C ++ K +K+ DLT
Sbjct: 291 -TKEKNKKALANIKLHSDIGLNKEECYSIVKEILKKHNKDLT 331
>UniRef50_A4X9Y0 Cluster: DNA polymerase III, epsilon subunit; n=3;
Actinomycetales|Rep: DNA polymerase III, epsilon subunit
- Salinispora tropica CNB-440
Length = 607
Score = 49.2 bits (112), Expect = 1e-04
Identities = 47/140 (33%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
TT+V D+ETTG + ITE+ + V + Q G+ L+ ++NP + P
Sbjct: 52 TTFVVVDLETTG---GTPDGGGITEIGAVKVRGGE---QLGV-----LATLVNPGTPVPP 100
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
V VLTG+T L AP + + SFL LP LVAHN +D L A C G
Sbjct: 101 FVTVLTGITQSMLLPAPPITE---VLPSFLEFLPPDAVLVAHNA-PYDVGFLKAACAAHG 156
Query: 125 ILLPSDLLCIDSLIGFRKIL 144
PS + +D+ R++L
Sbjct: 157 YRWPSPRV-LDTAALARRVL 175
>UniRef50_A3XPR4 Cluster: Nuclease subunit Cho of the excinuclease
complex; n=2; Flavobacteriaceae|Rep: Nuclease subunit
Cho of the excinuclease complex - Leeuwenhoekiella
blandensis MED217
Length = 519
Score = 49.2 bits (112), Expect = 1e-04
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+ D+ETTG + KITE+C + +Q G I + + ++NP ++I +
Sbjct: 50 FAIIDVETTGGGIKGN---KITEICIIV-------LQEG-KEINRFASLVNPGREIPLYI 98
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+ + +++AP F + A I + L + VAHN FDY ++ AE +AG+
Sbjct: 99 EKLTGINDRMVEDAPYFDELAPQI----DALTQDCIFVAHN-VGFDYNVVRAEFKEAGLD 153
Query: 127 LPSDLLC 133
LC
Sbjct: 154 FNRKRLC 160
>UniRef50_A4KRE5 Cluster: DNA polymerase III, epsilon subunit; n=11;
Francisella tularensis|Rep: DNA polymerase III, epsilon
subunit - Francisella tularensis subsp. holarctica 257
Length = 238
Score = 48.8 bits (111), Expect = 2e-04
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKI 62
R++ VF D ETTG ++ N+ I E F AV D I L F NP K+
Sbjct: 8 RMSRQVFIDTETTGFDYKIGNR--IIE--FGAVEVIDRRITGN-----NLHFYCNPNYKV 58
Query: 63 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECND 122
+ + GLTNE L + P F+ + + ++ FL I A + ++++ L + N
Sbjct: 59 EAGALAIHGLTNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNK 118
Query: 123 AGILLPSDLLCIDSLIGFRK 142
G L + +DSL RK
Sbjct: 119 YGTLEQNVAKIVDSLDLARK 138
>UniRef50_Q5P3L6 Cluster: Nuclease subunit Cho of the excinuclease
complex; n=2; Azoarcus|Rep: Nuclease subunit Cho of the
excinuclease complex - Azoarcus sp. (strain EbN1)
(Aromatoleum aromaticum (strain EbN1))
Length = 469
Score = 48.4 bits (110), Expect = 2e-04
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 18/127 (14%)
Query: 8 VFFDIETTGL-PFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
V D+ETTG P +R +TE+ L + R ++ + + ++NPE+ I +
Sbjct: 8 VLIDVETTGANPVSDR----VTEIAVLRIERGEI--------VGRWESLVNPERPIPALI 55
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
L G+T+E + APTF + A+++ L+ VAHN FDY + E + G
Sbjct: 56 QRLVGITDEMVAGAPTFAELADSVRGHLD----GAVFVAHNAR-FDYGFIRNEFSRLGQQ 110
Query: 127 LPSDLLC 133
+ +LC
Sbjct: 111 FEASVLC 117
>UniRef50_Q1MZX4 Cluster: Putative uncharacterized protein; n=1;
Oceanobacter sp. RED65|Rep: Putative uncharacterized
protein - Oceanobacter sp. RED65
Length = 738
Score = 48.4 bits (110), Expect = 2e-04
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV D+ETTG + + ++TE+ + V ++ + + ++NP + I +
Sbjct: 573 YVIVDVETTG---GRKEQHRVTEVGMVKVLNGEI--------VDEWQSLINPMRHIPQSI 621
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG++NE + NAP F A+ I F VAHN N FDY +E G
Sbjct: 622 TRLTGISNEMVSNAPVFDDVADEIAEFC----AGSVFVAHNVN-FDYGFFRSEFERLGRR 676
Query: 127 LPSDLLC 133
+ LC
Sbjct: 677 FHAPKLC 683
>UniRef50_A6EU25 Cluster: DNA polymerase III, epsilon subunit; n=1;
unidentified eubacterium SCB49|Rep: DNA polymerase III,
epsilon subunit - unidentified eubacterium SCB49
Length = 472
Score = 48.4 bits (110), Expect = 2e-04
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDL-DIQSGLPPIKKLSFVLNPEK 60
++ + D+ETTG Q R +TE+C + V ++ D+ S L +NPE
Sbjct: 3 IKTEKFTVIDVETTGGVGQGR----MTEICIITVENMEIVDVWSSL---------INPEI 49
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
I + LTG+T++ + +AP F + + + E + VAHN N FDY L E
Sbjct: 50 YIPQHITALTGITDQMVTDAPRFCD----VAAIIEEKTRDAIFVAHNVN-FDYGFLKKEF 104
Query: 121 NDAGILLPSDLLC 133
+ G LC
Sbjct: 105 DLIGASFSRKKLC 117
>UniRef50_A3Q7A4 Cluster: DNA polymerase III, epsilon subunit; n=19;
Mycobacterium|Rep: DNA polymerase III, epsilon subunit -
Mycobacterium sp. (strain JLS)
Length = 330
Score = 48.4 bits (110), Expect = 2e-04
Identities = 46/130 (35%), Positives = 64/130 (49%), Gaps = 18/130 (13%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T + D+ET+G + +I L LAV DD +++ + L+ +LNP + P
Sbjct: 15 TGWAVVDVETSGF---RPGQARIVSLAALAVG-DDGNVE------QSLATLLNPG--VDP 62
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ GLT E L+ AP F IV+ L EL + LVAHN FDY L AE G
Sbjct: 63 GPTHVHGLTAEMLEGAPRFGD----IVADLAELLRGRTLVAHNVG-FDYSFLTAEAELVG 117
Query: 125 ILLPSD-LLC 133
LP D ++C
Sbjct: 118 AELPIDSVMC 127
>UniRef50_A1ZC44 Cluster: DNA polymerase III, epsilon subunit; n=1;
Microscilla marina ATCC 23134|Rep: DNA polymerase III,
epsilon subunit - Microscilla marina ATCC 23134
Length = 463
Score = 48.4 bits (110), Expect = 2e-04
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y D+ETTGL KITE+ A+ + D G + ++NPE I +
Sbjct: 2 YTIIDVETTGL---RPTDDKITEI---AIYKHD-----GESVVDSFHSLVNPECYISDRI 50
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
+TG+TN+ + NAP F + A I++ + + VAHN + FDY + E G
Sbjct: 51 TQITGITNDMVANAPKFYEIAKDILA----ITEGTVFVAHNAH-FDYGFVREEFKALGYK 105
Query: 127 LPSDLLC 133
LC
Sbjct: 106 FTRKTLC 112
>UniRef50_Q64S03 Cluster: DNA polymerase III epsilon chain; n=5;
Bacteroidetes|Rep: DNA polymerase III epsilon chain -
Bacteroides fragilis
Length = 257
Score = 48.0 bits (109), Expect = 3e-04
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
VFFD+ETTG N +I E+C+L V +G K L +NPE I +
Sbjct: 10 VFFDLETTGTNI---NSDRIVEICYLKV------YPNGNEESKTLR--INPEMPIPAESS 58
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
+ G+ + + + PTFK+ A +I N++ + L N N FD +L E AG+ +
Sbjct: 59 AVHGIYDADVADCPTFKEVAKSIA---NDI-EGCDLAGFNSNRFDIPVLAEEFLRAGVDI 114
Query: 128 P-SDLLCIDSLIGFRKILKTT 147
S +D + F K+ + T
Sbjct: 115 DMSKRKFVDVQVIFHKMEQRT 135
>UniRef50_A0GYI8 Cluster: DNA polymerase III, epsilon subunit; n=2;
Chloroflexus|Rep: DNA polymerase III, epsilon subunit -
Chloroflexus aggregans DSM 9485
Length = 280
Score = 48.0 bits (109), Expect = 3e-04
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 15/117 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
VFFD+ETTGL Q ++ +C LA+ R + +G +++ ++NPE+++ P
Sbjct: 16 VFFDVETTGLDLQNGHR-----ICELAMLRREHRQITG-----QINTLINPERELDPQAS 65
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ G+ E L++AP F + +V +L + VAHN FD L E AG
Sbjct: 66 QVNGIRAEDLQSAPRFAELTVQVV----QLSQQAVRVAHN-LPFDESFLNMELARAG 117
>UniRef50_Q7NC15 Cluster: PolC; n=1; Mycoplasma gallisepticum|Rep:
PolC - Mycoplasma gallisepticum
Length = 1501
Score = 47.6 bits (108), Expect = 4e-04
Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDI---QSGLPPIKKLSFVLNPEKKI 62
++V FDIETTGL +I E+ + V + +L++ Q I K ++ +K +
Sbjct: 416 SFVIFDIETTGL---NAYYEQIIEIAAVRV-KAELNVTNHQLEFVQIGKFEKLIKNKKPL 471
Query: 63 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECND 122
LTGL + LK+A K + F+N + K LVAHNG FD+ I + D
Sbjct: 472 SKFTTQLTGLKDSDLKDAQDEK---TVLEEFVNFIQKDDVLVAHNGIDFDF-IWINTKLD 527
Query: 123 AGILLPSDLLCIDSL-IGFR--KILKTTQKSLPLKMNTSKD 160
L P D +DSL + ++ + + T ++L LK+ D
Sbjct: 528 KYKLKPLDNPMLDSLRLAYQLYQFKRYTLENLSLKLGYEYD 568
>UniRef50_Q9JYS6 Cluster: DNA polymerase III, epsilon subunit; n=3;
Neisseria meningitidis|Rep: DNA polymerase III, epsilon
subunit - Neisseria meningitidis serogroup B
Length = 470
Score = 47.2 bits (107), Expect = 5e-04
Identities = 31/80 (38%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 54 FVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 113
+++NP+K I V LTG+++ + +AP F + A + S L K LVAHN + FDY
Sbjct: 65 WLVNPQKPIPQFVAGLTGISDGMVADAPVFAEIAGELFSVL----KGCVLVAHN-SRFDY 119
Query: 114 KILLAECNDAGILLPSDLLC 133
L E + AGI S LC
Sbjct: 120 TFLKHEFHRAGIGFSSPALC 139
>UniRef50_Q8EQD9 Cluster: ATP-dependent DNA helicase; n=1;
Oceanobacillus iheyensis|Rep: ATP-dependent DNA helicase
- Oceanobacillus iheyensis
Length = 939
Score = 47.2 bits (107), Expect = 5e-04
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V D+ETTG KI E+ + + D++ I + NP + I P +
Sbjct: 4 FVVIDLETTG--HAPSKNDKIIEIGMVIIEGDEI--------IDTKTTFFNPGQPIPPFI 53
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
LTG++++ + +AP F ++A +I S L + ++AHN N FD L AE + GI
Sbjct: 54 TNLTGISDDDVADAPLFTEKALSIKSILED----SYIIAHNVN-FDLGFLNAELKENGI 107
>UniRef50_Q81Y85 Cluster: DNA polymerase III, epsilon subunit,
putative; n=10; Bacillus cereus group|Rep: DNA
polymerase III, epsilon subunit, putative - Bacillus
anthracis
Length = 315
Score = 47.2 bits (107), Expect = 5e-04
Identities = 54/198 (27%), Positives = 93/198 (46%), Gaps = 28/198 (14%)
Query: 7 YVFFDIETTGL-PFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
YV D ETTG P+ + KI ++ + +L Q +S+V NP++ I
Sbjct: 10 YVVIDFETTGFNPYND----KIIQVAAVKYRNHELVDQF-------VSYV-NPKRPIPDR 57
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
++ LTG+TN + +APT ++ ++FL+ +VAHN SFD + L + N G+
Sbjct: 58 IMSLTGITNYRVSDAPTIEEVLPLFLAFLH----TNVIVAHNA-SFDMRFLKSNVNMLGL 112
Query: 126 LLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLC 185
P + + ID++ +K +K K+ T K +L L S +++
Sbjct: 113 PEPKNKV-IDTVFLAKKYMKHAPNH---KLETLK-----RMLGIRLS-SHNAFDDCITCA 162
Query: 186 ASFSKDTCIDDEKSKKEN 203
A + K I++E +K N
Sbjct: 163 AVYQKCASIEEEAKRKSN 180
>UniRef50_Q83YZ1 Cluster: DNA polymerase III alpha subunit; n=1;
Peanut witches'-broom phytoplasma|Rep: DNA polymerase
III alpha subunit - Peanut witches'-broom phytoplasma
Length = 1492
Score = 47.2 bits (107), Expect = 5e-04
Identities = 50/145 (34%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK--KIHP 64
YV DIETTG +KT+ + AV IQ+G I+ ++NP K KI
Sbjct: 405 YVVLDIETTGF-----SKTRDRIISIAAVK-----IQNG-KIIEYFDELINPGKDIKISN 453
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ LT +++E L N P K+ + + F+ + P + LVAHN SFD + L + G
Sbjct: 454 LIQRLTNISDEILLNKPHIKEILSKFLDFIRDCPNCV-LVAHNA-SFDIEFLQETFKNIG 511
Query: 125 ILLPSDLLCIDSLI----GFRKILK 145
+ P L ID+L F KILK
Sbjct: 512 LYWPL-LPVIDTLTLAQKYFNKILK 535
>UniRef50_A4AXV6 Cluster: Putative uncharacterized protein; n=2;
Proteobacteria|Rep: Putative uncharacterized protein -
Alteromonas macleodii 'Deep ecotype'
Length = 715
Score = 47.2 bits (107), Expect = 5e-04
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 16/113 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV DIETTG + +ITE+ + + G + + +LNP+++I +
Sbjct: 543 YVVVDIETTG---GNNSYNRITEIGMVKLV--------GGKEVDRFQTLLNPQRRIPSSI 591
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
LTG++++ + +AP F + A+ I SF + VAHN N FDY + E
Sbjct: 592 TRLTGISDDMVADAPLFAEVADHIASFTED----AVFVAHNVN-FDYGFIKQE 639
>UniRef50_A7CWU9 Cluster: DNA-directed DNA polymerase; n=1;
Opitutaceae bacterium TAV2|Rep: DNA-directed DNA
polymerase - Opitutaceae bacterium TAV2
Length = 197
Score = 46.8 bits (106), Expect = 7e-04
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
V FD+ETTG + ++ +A R + G + S ++P + + +
Sbjct: 4 VIFDLETTGF------SPRWNDIIQIAAVR----LVDGRISDETFSTYVSPRRPVPDHIT 53
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
LTG+T+ + +AP A F+ ++ P LVAHNG+ FD + + C G+
Sbjct: 54 ELTGITDADVADAPETSDALRAFARFVGDVG-PTTLVAHNGHRFDMRFIAESCTLHGL 110
>UniRef50_Q10384 Cluster: Uncharacterized protein Rv2191/MT2247;
n=18; Actinomycetales|Rep: Uncharacterized protein
Rv2191/MT2247 - Mycobacterium tuberculosis
Length = 645
Score = 46.8 bits (106), Expect = 7e-04
Identities = 43/136 (31%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTK---ITELCFLAVSRDDLDIQSGLPPIKKLSFVLNP 58
+R TT+V D+ETTG + T ITE+ + V G + + + ++NP
Sbjct: 38 LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVC--------GGAVLGEFATLVNP 89
Query: 59 EKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLA 118
+ I P +V LTG+T + NAPT +A++ E LVAHN FD L A
Sbjct: 90 QHSIPPQIVRLTGITTAMVGNAPTI----DAVLPMFFEFAGDSVLVAHNA-GFDIGFLRA 144
Query: 119 ECNDAGILLPS-DLLC 133
I P +LC
Sbjct: 145 AARRCDITWPQPQVLC 160
>UniRef50_A6ECG9 Cluster: DNA polymerase III, epsilon subunit; n=1;
Pedobacter sp. BAL39|Rep: DNA polymerase III, epsilon
subunit - Pedobacter sp. BAL39
Length = 456
Score = 46.4 bits (105), Expect = 0.001
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG + ITE+ L + +G ++ ++NP + I +
Sbjct: 3 YAVVDIETTG---GHASGNGITEISIL--------VHNGHSIVQNYETLINPGQYIPAHI 51
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG++NE ++ AP+F Q A + L++ VAHN N FD+ + + G
Sbjct: 52 EALTGISNEMVETAPSFNQVAAEVYQLLHDK----IFVAHNVN-FDFSFIRHQLGVCGYE 106
Query: 127 LPSDLLC 133
L LC
Sbjct: 107 LSCRKLC 113
>UniRef50_A2U0G0 Cluster: DNA Pol III Epsilon Chain; n=2;
Polaribacter|Rep: DNA Pol III Epsilon Chain -
Polaribacter dokdonensis MED152
Length = 275
Score = 46.4 bits (105), Expect = 0.001
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 15/118 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
VFFD+ETTG+ +I E+ L V +G K ++++NPE +I
Sbjct: 10 VFFDLETTGVNIAT---DRIVEISILKV------FPNGNKESK--TWLVNPEIEIPQGAT 58
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
+ G+TNE + PTFK+ A + +E+ L N N FD +L E AGI
Sbjct: 59 DVHGITNEKVVTEPTFKELAGKV----SEMIAGCDLAGFNSNRFDIPLLAEELMRAGI 112
>UniRef50_O83649 Cluster: DNA polymerase III subunit epsilon; n=1;
Treponema pallidum|Rep: DNA polymerase III subunit
epsilon - Treponema pallidum
Length = 215
Score = 46.4 bits (105), Expect = 0.001
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 16/113 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+ FD ETTGL +E +I E+ + R + I + S ++ P++ I PDV
Sbjct: 15 FTAFDTETTGLKAEE---DRIIEIGAVTFDRKGI--------IARFSTLIFPDRAIPPDV 63
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
+ +T++ L N P F + IVS + K LVAHN N FD + L AE
Sbjct: 64 SKINHITDDMLVNKPRFCE----IVSDFSRFIKGTVLVAHNAN-FDVEFLNAE 111
>UniRef50_Q7NZA2 Cluster: Probable DNA-directed DNA polymerase III;
n=1; Chromobacterium violaceum|Rep: Probable
DNA-directed DNA polymerase III - Chromobacterium
violaceum
Length = 481
Score = 46.0 bits (104), Expect = 0.001
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 49 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 108
+++LS+++NP + I P + +TG++NE + AP F +A+ ++ L + L+AHN
Sbjct: 36 VERLSWLVNPGQPIPPFIENMTGISNEMVAGAPPFSAQADELLDRL----QGRLLLAHNA 91
Query: 109 NSFDYKILLAECNDAGILLPSDLLC 133
FDY L E G+ + LC
Sbjct: 92 R-FDYGFLKNEFRRHGLRFQARALC 115
>UniRef50_Q01KC6 Cluster: H0215F08.4 protein; n=4; Oryza sativa|Rep:
H0215F08.4 protein - Oryza sativa (Rice)
Length = 260
Score = 46.0 bits (104), Expect = 0.001
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
T + FD+ETTG F + ++ LC L+ ++ ++ + P + + + KI D
Sbjct: 61 TILVFDLETTGY-FHKDHRIVEFALCDLSGGKNST-FETLVNPERTVPDYVEHLIKIGTD 118
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLN--ELP-KPICLVAHNGNSFDYKILLAECND 122
+V G+ P F +++F+ + P KP+ VAHN FD + L E +
Sbjct: 119 LVCRPGI--------PRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDR 170
Query: 123 AGILLPSDLLCIDSLIGFRKILKTTQK 149
LP+D L D+L+ +K++K K
Sbjct: 171 CSAPLPADWLFFDTLLLAKKMVKAEGK 197
>UniRef50_Q9CEK5 Cluster: ATP-dependent helicase DinG; n=3;
Lactococcus lactis|Rep: ATP-dependent helicase DinG -
Lactococcus lactis subsp. lactis (Streptococcus lactis)
Length = 794
Score = 45.6 bits (103), Expect = 0.002
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 18/165 (10%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
M +T Y D+E T E KI ++ + V ++ ++ S +NP +
Sbjct: 1 MKNMTRYAVVDLEATDAHSSEN---KIIQIGIVLVEDGEI--------VETFSTEVNPHE 49
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
+ P + LTGL+++ LK AP F + + + + EL VAHN FDY +L
Sbjct: 50 PLLPRISELTGLSDKQLKTAPEFSE----VAAKVRELLTDSVFVAHNAR-FDYGLLEKSF 104
Query: 121 NDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASE 165
+AG+ +++L +D+ + ++ T + L+ + K D A +
Sbjct: 105 LNAGLEF-NEMLRVDT-VDLARVFYPTFEKYGLESLSEKLDLAHD 147
>UniRef50_Q6KIN3 Cluster: DNA polymerase III alpha subunit; n=1;
Mycoplasma mobile|Rep: DNA polymerase III alpha subunit
- Mycoplasma mobile
Length = 1433
Score = 45.6 bits (103), Expect = 0.002
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 18/159 (11%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
+++ TYV FD+ETTGL ++ + I +G I L F + P K
Sbjct: 394 LIKNETYVVFDLETTGL------SPIFDDIIEFGAQK----ILNG-KVIDTLQFFVKPNK 442
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
+I + ++TG+ N+ ++NA + K+ I+ F+ + +VAHN +FD + +
Sbjct: 443 EISEKITLITGIKNQDVENAISEKEALKKILEFMGD----HTVVAHNA-TFDMNFINEKI 497
Query: 121 NDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSK 159
S+L ID+L+ KI++ K L+ S+
Sbjct: 498 EKYN-FQESNLQIIDTLV-VSKIIEPEAKKFSLENLASR 534
>UniRef50_Q1YU82 Cluster: DNA polymerase III, epsilon subunit; n=1;
gamma proteobacterium HTCC2207|Rep: DNA polymerase III,
epsilon subunit - gamma proteobacterium HTCC2207
Length = 528
Score = 45.6 bits (103), Expect = 0.002
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 16/126 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
V D+ETTG + +I E+ L + + + +++ ++PE + P +
Sbjct: 25 VLLDLETTG---GKATHHRIIEIGLLVIEQGKV--------LERWQSFVDPETVLPPFIQ 73
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
LTG+ L+ AP F + A ++++LN+ LVAHN FDY L E GI
Sbjct: 74 KLTGIAPSMLRGAPLFSEVAETLLTYLNDR----TLVAHNAR-FDYGFLKNEFQRIGISY 128
Query: 128 PSDLLC 133
+ LC
Sbjct: 129 NAKPLC 134
>UniRef50_Q0SFP4 Cluster: Probable DNA polymerase III; n=1;
Rhodococcus sp. RHA1|Rep: Probable DNA polymerase III -
Rhodococcus sp. (strain RHA1)
Length = 649
Score = 45.6 bits (103), Expect = 0.002
Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 19/124 (15%)
Query: 7 YVFFDIETTGLPFQERNKT-KITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
+V D+ET+GL R+ T ++ + LA+ R+D ++ ++L +LNP P
Sbjct: 71 WVVVDVETSGL----RSSTHRVLSVAALAL-REDGSVE------RELVTLLNPG--CDPG 117
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
V + LT + L AP F++ AN ++ L+ LVAHN SFDY L AE AG+
Sbjct: 118 PVHIHNLTPQRLAGAPRFEEVANDLLELLDGRT----LVAHNA-SFDYGFLDAEVRRAGM 172
Query: 126 LLPS 129
+P+
Sbjct: 173 TMPT 176
>UniRef50_A3HRT4 Cluster: Putative uncharacterized protein; n=1;
Algoriphagus sp. PR1|Rep: Putative uncharacterized
protein - Algoriphagus sp. PR1
Length = 456
Score = 45.6 bits (103), Expect = 0.002
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+ DIETTG + ITE+ L I G I++ ++NPE+ I +
Sbjct: 3 FAIVDIETTG---GAASTCGITEIAIL--------IHDGEKVIEEFESLINPEQDIPTYI 51
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+ N + +APTF++ ++ + L+ VAH+ N FDY + A N G
Sbjct: 52 TGLTGIDNSMVSDAPTFEELSDKLWDLLHGR----VFVAHSVN-FDYGFVRACFNAIGRE 106
Query: 127 LPSDLLCIDSLIGFRKIL 144
D LC L RKI+
Sbjct: 107 FKVDKLCTVRLA--RKII 122
>UniRef50_A1G6Z7 Cluster: DNA polymerase III, epsilon subunit; n=1;
Salinispora arenicola CNS205|Rep: DNA polymerase III,
epsilon subunit - Salinispora arenicola CNS205
Length = 616
Score = 45.6 bits (103), Expect = 0.002
Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 16/140 (11%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
TT+V D+ETTG + ITE+ + V + Q G+ L+ ++NP + P
Sbjct: 61 TTFVVVDLETTG---GAPDGGGITEIGAVKVRGGE---QLGV-----LATLVNPGVPVPP 109
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
V VLTG+T L AP+ A + SFL L LVAHN +D L A C G
Sbjct: 110 FVTVLTGITQAMLLPAPSI---AQVLPSFLEFLSADAVLVAHNA-PYDVGFLKAACAAHG 165
Query: 125 ILLPSDLLCIDSLIGFRKIL 144
P+ + +D+ R++L
Sbjct: 166 HRWPNPRI-LDTAALARRVL 184
>UniRef50_Q1WU39 Cluster: ATP-dependent helicase, DinG family; n=1;
Lactobacillus salivarius subsp. salivarius UCC118|Rep:
ATP-dependent helicase, DinG family - Lactobacillus
salivarius subsp. salivarius (strain UCC118)
Length = 929
Score = 44.8 bits (101), Expect = 0.003
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
M++ Y D+ETTG P Q+ + I C D + S ++NP
Sbjct: 1 MIKERIYAVVDLETTG-PKQDGSDKIIQFSC---------DFVQSNKIVNHFSTLINPGM 50
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
I +V LTG+ ++ ++ AP F + A I + L VAHN N FDY L +E
Sbjct: 51 PIPVEVKKLTGIKDKDVRYAPYFDEVAGTIYAMLQN----TTFVAHNVN-FDYSFLSSEL 105
Query: 121 NDAG 124
AG
Sbjct: 106 ERAG 109
>UniRef50_A4G2P4 Cluster: Putative DNA polymerase/helicase; n=1;
Herminiimonas arsenicoxydans|Rep: Putative DNA
polymerase/helicase - Herminiimonas arsenicoxydans
Length = 193
Score = 44.8 bits (101), Expect = 0.003
Identities = 42/127 (33%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRD-DLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+F D+ETTG +ITE+ + V+ D D+D S SFV NP + I +
Sbjct: 8 IFIDLETTGANLIN---DRITEIGIVTVNADGDIDRWS--------SFV-NPGRPIPSFI 55
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+++ + APTF+ A+ + E + +AHN FDY L AG
Sbjct: 56 QDLTGISDRMVATAPTFETLADTV----RERLEDGLFIAHNAR-FDYGFLHHALARAGHA 110
Query: 127 LPSDLLC 133
L D+LC
Sbjct: 111 LSIDVLC 117
>UniRef50_Q682U6 Cluster: Putative uncharacterized protein
At5g26940; n=3; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At5g26940 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 316
Score = 44.8 bits (101), Expect = 0.003
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 62 IHPDVVVLT-----GLTNESL--KNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSF 111
++P VV +T G+ N+ + P ++ + ++ KP + LVAHNG SF
Sbjct: 148 VNPGVVPITNAHIHGIRNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSF 207
Query: 112 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 153
D++ L+ E N +P + L +DSL R+ +K+ + ++ L
Sbjct: 208 DFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSVEPTVKL 249
>UniRef50_Q9KC83 Cluster: ATP-dependent DNA helicase; n=3;
Bacillus|Rep: ATP-dependent DNA helicase - Bacillus
halodurans
Length = 942
Score = 44.4 bits (100), Expect = 0.004
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 21/155 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V DIETTG + ++ I E+ + + ++ ++ ++NPE+ I P +
Sbjct: 5 FVVIDIETTGQSVAQGDR--IIEIGAVVIEDEEA--------VESFCTLVNPERSIPPFI 54
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL--LAECNDAG 124
LTG+++E +K APTF Q ++S L + VAHN + FD L L E G
Sbjct: 55 EELTGISDEMVKGAPTFHQCIPELMSML----EGGVFVAHNVH-FDLSFLQKLLEHEGYG 109
Query: 125 ILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSK 159
LL + ID+ + +IL T++S L T +
Sbjct: 110 PLL---VPIIDT-VELSRILLPTEESYKLSALTEQ 140
>UniRef50_Q8YE22 Cluster: DNA POLYMERASE III, EPSILON CHAIN; n=27;
Alphaproteobacteria|Rep: DNA POLYMERASE III, EPSILON
CHAIN - Brucella melitensis
Length = 248
Score = 44.4 bits (100), Expect = 0.004
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPE-KKIHPDV 66
+ FD ETTGL ER + ++ E+ +++ + P + +NP+ +++HPD
Sbjct: 18 IVFDTETTGL---ERLEDRVIEI-------GGVELVNRFPTGRTFHKFINPQGRQVHPDA 67
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
+ + G++NE L + P F + + + F++ LVAHN FD + AE
Sbjct: 68 LAVHGISNEQLLDKPVFAEILDEFLEFIDGAR----LVAHNA-MFDLGFINAE 115
>UniRef50_Q5FJX1 Cluster: ATP-dependent DNA helicase; n=5;
Lactobacillus|Rep: ATP-dependent DNA helicase -
Lactobacillus acidophilus
Length = 927
Score = 44.4 bits (100), Expect = 0.004
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
T+ D+ETTG Q N I + I + +K SF++NP ++I
Sbjct: 9 TFAVVDLETTGT--QRENGHHIIQF--------GCAIIKNMKVVKTYSFLINPHREIPQS 58
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
VV LTG++NE ++ F A IVS L + VAHN + FD L E G
Sbjct: 59 VVNLTGISNEDVQKQKDFDYYAPKIVSILQD----TVFVAHNVD-FDLPFLNYELTQHG 112
>UniRef50_Q21VB4 Cluster: DNA polymerase III, epsilon subunit; n=3;
Betaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Rhodoferax ferrireducens (strain DSM 15236 /
ATCC BAA-621 / T118)
Length = 476
Score = 44.4 bits (100), Expect = 0.004
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 18/128 (14%)
Query: 7 YVFFDIETTG-LPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
YV D+ETTG P +R ITE+ + I++G + + S ++NP I P
Sbjct: 5 YVLLDLETTGGNPVHDR----ITEIAAVR-------IENG-QEVARWSTLVNPGCSISPF 52
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
+ LTG++N ++ AP F+ A +++ L+ LVAHN FD+ LL E +
Sbjct: 53 IQHLTGISNAMVRGAPGFETVAQHLLALLD----GAVLVAHNVR-FDHGFLLNELARLDV 107
Query: 126 LLPSDLLC 133
L LC
Sbjct: 108 ALRVKTLC 115
>UniRef50_A4SZE6 Cluster: DNA polymerase III, epsilon subunit; n=1;
Polynucleobacter sp. QLW-P1DMWA-1|Rep: DNA polymerase
III, epsilon subunit - Polynucleobacter sp. QLW-P1DMWA-1
Length = 466
Score = 44.4 bits (100), Expect = 0.004
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 9 FFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVV 68
F DIETTG F ++ +ITE+ ++ D + + L +NP+ I ++
Sbjct: 13 FVDIETTGSHF---DRDRITEIGIKTLANDGIQVWERL---------INPQTFIPQNIQR 60
Query: 69 LTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLP 128
LTG++ + ++ P+F Q A + EL I VAHN FDY + A GI
Sbjct: 61 LTGISPQMVEGQPSFDQVAKEL---KQELEGKI-FVAHNAR-FDYGFIKASFKRVGIDFK 115
Query: 129 SDLLC 133
+LC
Sbjct: 116 PKVLC 120
>UniRef50_A3JBF5 Cluster: Putative uncharacterized protein; n=2;
Marinobacter|Rep: Putative uncharacterized protein -
Marinobacter sp. ELB17
Length = 483
Score = 44.4 bits (100), Expect = 0.004
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 61
++ TT+ F D+ETTG +ITE+ + + + ++NP+ +
Sbjct: 8 LKTTTFAFLDLETTGGSVAT---DRITEI--------GIQFWRAGECVGQWQTLVNPKTR 56
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 121
I P + LTG++N + +AP F+ A+ + L+ + VAHN FDY + E
Sbjct: 57 ISPFIEQLTGISNAMVADAPLFEDIADELEQRLD----GVVFVAHNAR-FDYGFVKGEFR 111
Query: 122 DAGILLPSDLLC 133
G + + +LC
Sbjct: 112 RLGRMFVAKVLC 123
>UniRef50_A0Y3N2 Cluster: Putative uncharacterized protein; n=2;
Alteromonadales|Rep: Putative uncharacterized protein -
Alteromonadales bacterium TW-7
Length = 745
Score = 44.4 bits (100), Expect = 0.004
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG + ++TE+ + V + I + ++NP++ I +
Sbjct: 579 YSVVDIETTG---GLKGGNRVTEIGIVKVQHGKV--------IDTWTTLINPQRHIPSFI 627
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+++ + NAP F A + L++L I VAHN N FDY + EC AG
Sbjct: 628 TKLTGISDGMVYNAPVFADIAQPL---LDKLAGSI-FVAHNVN-FDYGFIKKECEVAGHF 682
Query: 127 LPSDLLC 133
+C
Sbjct: 683 FKMPKMC 689
>UniRef50_A5BCR2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 340
Score = 44.4 bits (100), Expect = 0.004
Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 19/157 (12%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
+ ++ T + FD ETTGL R +I E + DL G ++NPE+
Sbjct: 130 LAKLVTVIVFDTETTGL---SRANDRIIE-----IGLQDL----GGGENSTFQTLVNPER 177
Query: 61 KI-HPDVV-VLTGLTNESLKNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSFDYKI 115
+ +P V + T + N + P +K ++ ++ KP I VAHNG SFD
Sbjct: 178 IVPNPHVHGITTYMVNRP--DVPRWKDLIPILLQYVESRQKPGGLILWVAHNGRSFDVPF 235
Query: 116 LLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLP 152
L+ E + +P + +D+L R+ +K+ LP
Sbjct: 236 LINEFSRCNTEVPPNWRFMDTLPLAREFIKSAGSDLP 272
>UniRef50_Q6YQB0 Cluster: DNA polymerase III alpha subunit; n=2;
Candidatus Phytoplasma asteris|Rep: DNA polymerase III
alpha subunit - Onion yellows phytoplasma
Length = 1571
Score = 44.0 bits (99), Expect = 0.005
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
+++ TYV FD+ETTGL + KI E+ + + + + I + ++P++
Sbjct: 475 VLKEATYVVFDLETTGL---SNVRDKIIEIAGVKIKKGN--------KIGEFQKFIDPQQ 523
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
K+ + +T +T+E L+ T Q ++F K LVAHN SFD L +
Sbjct: 524 KLTKTITDITNITDEMLQGQQTIDQVLPQFLAF----AKDCVLVAHNA-SFDINFLKEKA 578
Query: 121 NDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLK 154
+ I L + ID++ ++ K LK
Sbjct: 579 KELKISLEPQPI-IDTMALSQRYFSNLLKYFSLK 611
>UniRef50_Q14P64 Cluster: Probable dna polymerase III alpha subunit
protein; n=1; Spiroplasma citri|Rep: Probable dna
polymerase III alpha subunit protein - Spiroplasma citri
Length = 1453
Score = 44.0 bits (99), Expect = 0.005
Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 61
+R YV FD+ETTGL +I E F AV D + SG I ++ + P K
Sbjct: 405 LRTAKYVIFDLETTGL---SSGYDEIIE--FGAVIMDGI---SGERQI--INHLFKPSVK 454
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 121
+ LTG+T+E L + PTF + + I+ + K L+AHN FD + +
Sbjct: 455 LSSFTTELTGITDELLADKPTFIESIDQILEYF----KDAILIAHNA-EFDLGFIQSWLK 509
Query: 122 DAG 124
AG
Sbjct: 510 KAG 512
>UniRef50_A6SVF1 Cluster: Uncharacterized conserved protein; n=4;
Burkholderiales|Rep: Uncharacterized conserved protein -
Janthinobacterium sp. (strain Marseille) (Minibacterium
massiliensis)
Length = 195
Score = 44.0 bits (99), Expect = 0.005
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 16/126 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+F D+ETTG +ITE+ +AV D I + S +NP + I +
Sbjct: 8 IFVDLETTGANLVN---DRITEIGIVAVDPDGC--------IDRWSTFVNPGRPIPEFIQ 56
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
LTG+++E +++AP F+ A+ + E + +AHN FDY L +G +L
Sbjct: 57 GLTGISDEMVESAPMFETLADTV----RERLQDGLFIAHNAR-FDYGFLHHAFVRSGHVL 111
Query: 128 PSDLLC 133
+++LC
Sbjct: 112 NAEMLC 117
>UniRef50_A0TFD8 Cluster: DNA polymerase III, epsilon subunit; n=4;
Betaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Burkholderia ambifaria MC40-6
Length = 229
Score = 44.0 bits (99), Expect = 0.005
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
T D ETTGL + TE+ + + ++ + + ++N ++I D
Sbjct: 27 TVAVLDFETTGL--SPNLGDRATEIAVILLRDGEI--------VDRYQSLMNAGRRIPSD 76
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
VV LTG+TNE + +AP Q +F+ P +VAHN FD + AE G+
Sbjct: 77 VVALTGITNEMIASAPPVSQVMKEAAAFVGNHP----VVAHNA-GFDKRFWQAELGMLGM 131
Query: 126 LLPSDLLC 133
C
Sbjct: 132 AAEHAFAC 139
>UniRef50_Q2B3X2 Cluster: ATP-dependent DNA helicase; n=2;
Bacillus|Rep: ATP-dependent DNA helicase - Bacillus sp.
NRRL B-14911
Length = 934
Score = 43.6 bits (98), Expect = 0.006
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV D+ETTG ++ +K + F AV + G I + S +LNP K+I +
Sbjct: 5 YVVVDLETTGNSAKKGDKI----IQFAAV------VMEGGKIIDQYSSLLNPGKEIPAFI 54
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
LTGL + + +AP F + A ++ EL + VAHN FD L E DAG
Sbjct: 55 EELTGLNDSMVSDAPVFAEIAPKVM----ELLEDAYFVAHN-VLFDLSFLQEELLDAG 107
>UniRef50_A5EY86 Cluster: DNA polymerase III, epsilon subunit; n=1;
Dichelobacter nodosus VCS1703A|Rep: DNA polymerase III,
epsilon subunit - Dichelobacter nodosus (strain
VCS1703A)
Length = 233
Score = 43.6 bits (98), Expect = 0.006
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
V FD ETTG+ F+ NK + + + +++ +P LNPE+ + P
Sbjct: 6 VIFDTETTGMNFESDNKAEGHRIIEIGC----VELIDRVPTEHYFHCYLNPEQPVDPQAF 61
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ G+++E L + P FK ++L + LVAHN +FD + + E AG
Sbjct: 62 KVHGISDEFLADKPFFKDVLPEFEAYLASADE---LVAHN-IAFDRQFIDRELQLAG 114
>UniRef50_A2UA15 Cluster: DNA polymerase III, epsilon subunit; n=1;
Bacillus coagulans 36D1|Rep: DNA polymerase III, epsilon
subunit - Bacillus coagulans 36D1
Length = 555
Score = 43.6 bits (98), Expect = 0.006
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 15/118 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV D+ETTG ++ ++ + F AV + +I++ SFV NPEK + P +
Sbjct: 4 YVVVDLETTGNSAKKGDRI----IQFSAVVVEGREIKTQFT-----SFV-NPEKPVPPFI 53
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
LTG+ N L+ AP F + A I+ L + VAHN FD L E AG
Sbjct: 54 SELTGIDNGMLEEAPVFSEIAPRIMEILED----SIFVAHN-VLFDLPFLQQELKAAG 106
>UniRef50_Q9PQB4 Cluster: DNA polymerase III polC-type; n=1;
Ureaplasma parvum|Rep: DNA polymerase III polC-type -
Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
Length = 1442
Score = 43.6 bits (98), Expect = 0.006
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 14/111 (12%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
TYV FDIETTGL F N +I E F AV + + Q G +K+ F + P ++I+ +
Sbjct: 408 TYVIFDIETTGL-FP--NFDEIIE--FGAVIMQN-NKQIG----EKIQFFIKPIQQINEN 457
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
V LT ++ E + NA K A++ + E+ LVAHNG +FD +
Sbjct: 458 VTNLTNISQEMVNNAIDEK---TALLK-IKEIFDDHILVAHNGINFDINFI 504
>UniRef50_Q839U7 Cluster: DNA polymerase III, epsilon subunit; n=1;
Enterococcus faecalis|Rep: DNA polymerase III, epsilon
subunit - Enterococcus faecalis (Streptococcus faecalis)
Length = 289
Score = 43.2 bits (97), Expect = 0.008
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 16/116 (13%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 63
+ ++ FDIETTGL F + +I+ ++ D +++ ++N + I
Sbjct: 5 VKEFIAFDIETTGLDFHQDAVIQISAARYV----DGIEVDY-------FDTLVNSDY-IP 52
Query: 64 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
++ LTG+TN+ + NAPT + ++ +L + LV HN SFD+ L A+
Sbjct: 53 DEITKLTGITNDQVLNAPTLDE----VMPYLFDYLGDTILVGHNIKSFDFPFLKAK 104
>UniRef50_A6P0N2 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 1390
Score = 43.2 bits (97), Expect = 0.008
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 18/137 (13%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
V FDIETTGL + + I E+ + + ++ + ++P + + ++V
Sbjct: 370 VCFDIETTGL---DNRRDVIIEIGAVILRNGEI--------AETFDTFVSPGRPLSREIV 418
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
LT +T++ L+ AP+ ++ A + F + P L AHN FD + C GI
Sbjct: 419 ELTSITDKMLEGAPSQEEAIRAFLEFAGDRP----LAAHNA-EFDMGFIAEGCRRYGI-- 471
Query: 128 PSDLLCIDSLIGFRKIL 144
P + ID+LI + +L
Sbjct: 472 PFEKTSIDTLILAQNLL 488
>UniRef50_Q8A811 Cluster: DNA Pol III Epsilon Chain; n=21; cellular
organisms|Rep: DNA Pol III Epsilon Chain - Bacteroides
thetaiotaomicron
Length = 277
Score = 42.7 bits (96), Expect = 0.011
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
VFFD+ETTG N +I E+C+L V +G K + +NPE I
Sbjct: 28 VFFDLETTGTNI---NTDRIVEICYLKV------YPNGNEETKTMR--INPEMHIPEASS 76
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
+ G+ + + + PTFK+ A + + L N N FD +L E AG+
Sbjct: 77 AVHGIYDADVADCPTFKEVAKNVARDIEGCD----LAGFNSNRFDIPVLAEEFLRAGV 130
>UniRef50_A6PV20 Cluster: DNA polymerase III, epsilon subunit; n=1;
Victivallis vadensis ATCC BAA-548|Rep: DNA polymerase
III, epsilon subunit - Victivallis vadensis ATCC BAA-548
Length = 185
Score = 42.7 bits (96), Expect = 0.011
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 7 YVFFDIETTGL-PFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
+ FD+ETTG+ P ++R I EL + V RD + + ++NP +I
Sbjct: 9 FTIFDVETTGMSPVRDR----IVELAAVRVDRDG--------SLSRFQSLVNPGVRIPAQ 56
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
V + +T++ + AP+F + + F +E LVAHN FD L G+
Sbjct: 57 AVAVHHITDDMVAGAPSFARMGLDFLEFASE----STLVAHNAR-FDLGFLQESLARTGL 111
Query: 126 LLPSDLLCIDSLIGFRKILKTTQKSLP 152
L +DSL ++LKTT +LP
Sbjct: 112 PLWKG-KTLDSL----RLLKTTFPNLP 133
>UniRef50_Q38X67 Cluster: Putative ATP-dependent helicase, DinG
family; n=1; Lactobacillus sakei subsp. sakei 23K|Rep:
Putative ATP-dependent helicase, DinG family -
Lactobacillus sakei subsp. sakei (strain 23K)
Length = 944
Score = 42.3 bits (95), Expect = 0.015
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 16/137 (11%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
M R T Y D+ETTG ++ ++ I C L +Q+G I+ +S +NP +
Sbjct: 1 MNRETIYAVVDLETTGTNIKDGDRI-IQFGCAL--------VQNG-KIIQTISQDVNPLR 50
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
+ + LT +T + L+ AP F+ A +V L+ VAHN N FD L E
Sbjct: 51 DVPTKIQHLTHITADQLELAPIFEDLAPTLVEILS----GTVFVAHNIN-FDLPFLNGEL 105
Query: 121 NDAGILLPSDLLCIDSL 137
G L P DL ID++
Sbjct: 106 TRVG-LQPLDLAGIDTV 121
>UniRef50_Q3JDE1 Cluster: Exonuclease; n=3; Gammaproteobacteria|Rep:
Exonuclease - Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848)
Length = 205
Score = 41.9 bits (94), Expect = 0.019
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y+ D ETTGLP E I L VS ++ + + F P+K+I +
Sbjct: 16 YIVLDTETTGLP-DENGLPDIVTLGITVVSNREI--------AESVEFKTRPQKRISEEA 66
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
+ G+TN+ +F + I +L K +V HN SFD+ ILL G+
Sbjct: 67 QSIHGITNKQAAAFDSFDSQWQQISEYL----KHQLIVIHNA-SFDWPILLDHVLRHGLA 121
Query: 127 LP 128
+P
Sbjct: 122 MP 123
>UniRef50_A2EQX6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 446
Score = 41.9 bits (94), Expect = 0.019
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 147 TQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLN 206
TQK+ P KD S+S L ++ E +E+ K+ I+++K +K +
Sbjct: 210 TQKAKPRPSAIKKDSSSSSLSEEKVVKKEEVKQEVKEQKIEEKKEEKIEEKKEEKVEEKK 269
Query: 207 QQKCTNLKKGRKNKNDLTTQD---QSLSIQNKSTKKRE 241
++K K+ K + ++ D SLSI +KS KK+E
Sbjct: 270 EEKAEEKKEEEKKSDSDSSSDSDSSSLSISSKSDKKQE 307
>UniRef50_Q3K0L7 Cluster: Exonuclease, DNA polymerase III, epsilon
subunit family; n=7; Streptococcus agalactiae|Rep:
Exonuclease, DNA polymerase III, epsilon subunit family
- Streptococcus agalactiae serotype Ia
Length = 604
Score = 41.5 bits (93), Expect = 0.026
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
++ FDIETTGL Q+ ++ + F ++G + ++N + I DV
Sbjct: 53 FIAFDIETTGLNSQQDRIVEVGAVLF----------ENG-KVVDSYESLVNAKVNISADV 101
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNEL---PKPICLVAHNGNSFDYKILLAECNDA 123
+ +TN +KNAP+ Q +V+FL + P+C AHN FD L CN
Sbjct: 102 TRINNITNRMIKNAPSENQVYYELVNFLGDALNGKTPVC--AHNA-KFDMGFL---CNTL 155
Query: 124 GIL-LPSDLLCIDSLIGFRKILK 145
L ++ +D+L RK +K
Sbjct: 156 SRLGYNGEIKYLDTLSLSRKNVK 178
>UniRef50_A6WGD9 Cluster: DNA polymerase III, epsilon subunit; n=1;
Kineococcus radiotolerans SRS30216|Rep: DNA polymerase
III, epsilon subunit - Kineococcus radiotolerans
SRS30216
Length = 224
Score = 41.5 bits (93), Expect = 0.026
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y D+ETTGL + ++ ++ AV+ LD + + + S +++P + P
Sbjct: 26 YAVLDVETTGL--RPETGDRVVQI---AVTL--LDARGTVE--RSWSSLVDPHRDPGPTH 76
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
V G+T E L APTF Q A + L+ VAHN FD+K + AE AG+
Sbjct: 77 V--HGITAERLAGAPTFAQLAPTVAGLLDGR----VFVAHNAR-FDWKFVSAEMRAAGVH 129
Query: 127 LP 128
LP
Sbjct: 130 LP 131
>UniRef50_A5Z7T3 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 237
Score = 41.5 bits (93), Expect = 0.026
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 63
+ YV DIET+G+ + KI E+ + V RD + + S ++NP K+
Sbjct: 2 VKDYVCVDIETSGIRVKW---DKIIEIGAVKV-RDGKAVDT-------FSELINPGLKLS 50
Query: 64 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 123
P + LTG+T+E LK+ P ++ + F + ++ HN FDY L + N
Sbjct: 51 PYITELTGITDEMLKDKPFIEEVLPRFIEFAGD----DVIMGHN-IMFDYSFL--KQNAI 103
Query: 124 GILLPSDLLCIDSLIGFRKILK 145
L D + ID+L RK LK
Sbjct: 104 NQKLKFDKMGIDTLKIARKTLK 125
>UniRef50_A5KMD9 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 279
Score = 41.5 bits (93), Expect = 0.026
Identities = 38/142 (26%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 61
+ + +Y+ FD+ETTGL + +I E+ L ++ G + + F+ P++
Sbjct: 34 IMLKSYIAFDLETTGL---DPMNNEIIEI-------GALKVRDGKVSERFMEFI-KPQEL 82
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 121
I P + LTG++N+ + +A + + I F++ + I L+ HN FDY +C
Sbjct: 83 ISPAITGLTGISNDMVASA---RPARSVITDFIDFCEEDI-LIGHN-IIFDYS--FTKCT 135
Query: 122 DAGILLPSDLLCIDSLIGFRKI 143
A LP + + ID+L +K+
Sbjct: 136 AAREGLPFEKMGIDTLKIAKKV 157
>UniRef50_Q9Z8D3 Cluster: DNA Polymerase III Epsilon Chain; n=8;
Chlamydiaceae|Rep: DNA Polymerase III Epsilon Chain -
Chlamydia pneumoniae (Chlamydophila pneumoniae)
Length = 237
Score = 41.1 bits (92), Expect = 0.034
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+F+D ETTG + + +I E+ D+ L++V NPE I +
Sbjct: 10 IFYDTETTGTQIE---RDRIIEIAAYNSVTDE----------SFLTYV-NPEIPIPDEAS 55
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
+ G+T +++ +AP F + F E LVAHN + FD+ +L EC L
Sbjct: 56 KIHGITTDAVLSAPKFPEAYEGFRKFCGE---DSILVAHNNDGFDFPLLGKECRRHS-LE 111
Query: 128 PSDLLCIDSL 137
P IDSL
Sbjct: 112 PLTNRTIDSL 121
>UniRef50_Q1VJ53 Cluster: DNA polymerase III subunit epsilon; n=1;
Psychroflexus torquis ATCC 700755|Rep: DNA polymerase
III subunit epsilon - Psychroflexus torquis ATCC 700755
Length = 226
Score = 41.1 bits (92), Expect = 0.034
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ DIETTGL ++E ++ I E+ + +++ ++ +NP K + + +
Sbjct: 4 IILDIETTGLDYKEGHR--IIEIGCVELNQKEVG--------SNFHQYINPLKTLTDENI 53
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+ G+TNE L++ P F+ A+ ++F+ K ++AHN N FD L
Sbjct: 54 KIHGITNEFLEDKPLFEDVADKFLNFI----KDSQIIAHNAN-FDVGFL 97
>UniRef50_Q55C81 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1359
Score = 41.1 bits (92), Expect = 0.034
Identities = 32/132 (24%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 130 DLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDS---ASELLWPELDVSTENWEEIDNLCA 186
DL+ + SL G + ++ T +++ ++ N+ K + SEL + ++ N+E D +
Sbjct: 312 DLISL-SLTGNKFMIPATPENIEIQ-NSKKSHTHHDRSELTTIDENIDENNFENNDFI-N 368
Query: 187 SFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTG 246
+ + +T +D+ +K E + +QK +++K ++N+ND+ DQ SI K + E L
Sbjct: 369 NENNNTDDNDDSNKIEEEEEEQKPNSVEKLKENENDIVNNDQLKSI--KKDENEEEKLEN 426
Query: 247 LYKRLLDKDAVN 258
+ + ++D ++
Sbjct: 427 VEENIIDSKNIS 438
>UniRef50_Q895Z5 Cluster: DNA polymerase III alpha subunit; n=1;
Clostridium tetani|Rep: DNA polymerase III alpha subunit
- Clostridium tetani
Length = 380
Score = 40.7 bits (91), Expect = 0.045
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 7 YVFFDIETTGL-PFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
+V D+ETTGL P + KI E+ + + ++K + ++NP+ I
Sbjct: 84 FVVIDLETTGLYPVTD----KIIEITAIKYKSGQI--------VEKYNTLINPKINIPKR 131
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLA 118
+ +TN +K++P + ++ F+ E P LVAHN SFD K L A
Sbjct: 132 ATEINNITNNMVKDSPVIEDVLPELLKFIKEYP----LVAHNA-SFDIKFLNA 179
>UniRef50_Q2MG35 Cluster: DNA polymerase III, epsilon subunit; n=1;
Micromonospora echinospora|Rep: DNA polymerase III,
epsilon subunit - Micromonospora echinospora
(Micromonospora purpurea)
Length = 386
Score = 40.7 bits (91), Expect = 0.045
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 114
++NP++ + P V G++ + APTF Q A I EL K +VAHN SFD +
Sbjct: 21 LVNPDRDLGPQSV--HGISAAEARRAPTFGQLAGQIA----ELLKDRVVVAHN-LSFDAR 73
Query: 115 ILLAECNDAGILLPSD 130
L AE GI +P D
Sbjct: 74 FLTAEFERLGIAVPID 89
>UniRef50_A7B5W2 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 219
Score = 40.7 bits (91), Expect = 0.045
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 63
+ Y FD+ETTG+ N I E+ + V + G+ S ++NP + I
Sbjct: 12 VPDYTVFDLETTGI---SANMDDIIEISAVKV-------KGGIVQ-DTFSTLVNPGRHIP 60
Query: 64 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECND 122
+ G+T++ + AP ++ A+ FL + + I LV HN SFD K + E +
Sbjct: 61 AQATKVNGITDQMVSEAPLIRE---AMTEFLRFVGEDI-LVGHNIQSFDMKFIYREVEE 115
>UniRef50_A5UUI5 Cluster: DNA polymerase III, epsilon subunit; n=5;
Chloroflexi (class)|Rep: DNA polymerase III, epsilon
subunit - Roseiflexus sp. RS-1
Length = 956
Score = 40.7 bits (91), Expect = 0.045
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 16/113 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y+ D+ETTGL E +I E+ + + D++ ++ S ++ P + +
Sbjct: 5 YIAIDVETTGL---EAGVDEIIEIAAVKFNADEV--------LETFSTLVQPVHSLPLNS 53
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
LTG+T + L +AP F + A +FL P LV HN FD ++L A+
Sbjct: 54 SRLTGITADMLASAPRFAEVAPRFAAFLKNYP----LVGHN-VEFDLRMLRAQ 101
>UniRef50_A7RWU1 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 461
Score = 40.7 bits (91), Expect = 0.045
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKL-SFVLNP----EK 60
T+V FD ETTGL + + I +L + + D L + P + + S N E
Sbjct: 155 TFVMFDTETTGL---DTSNDVIIQLACASENGDPLHSRYMFPGGRSIGSEATNAHGISEA 211
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL----NELPKPICLVAHNGNSFDYKIL 116
I V+L L + + K ++FL ++ PK +CLVAH G+SFD+++L
Sbjct: 212 FIDGSRVLLKD--GRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRLL 269
Query: 117 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS-KDDSASEL 166
+ C L+ + L+ K+++ ++K ++S K +S S L
Sbjct: 270 I-NCLKRHNLMNEFISTGSVLLDSVKVVRASKKQEKSPFDSSFKKESLSAL 319
>UniRef50_Q831X1 Cluster: DNA polymerase III, epsilon
subunit/ATP-dependent helicase DinG; n=2;
Enterococcus|Rep: DNA polymerase III, epsilon
subunit/ATP-dependent helicase DinG - Enterococcus
faecalis (Streptococcus faecalis)
Length = 929
Score = 40.3 bits (90), Expect = 0.059
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NP + + + LTG++N ++ AP F+ A+ I +L + VAHN + FDY
Sbjct: 51 VNPNQVVPKQIQSLTGISNTQVQKAPYFEDVAHTIYHYLED----TIFVAHNVH-FDYNF 105
Query: 116 LLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 153
L E G P + ID+ + +I T+KS L
Sbjct: 106 LARELVRCG-TPPLTIPAIDT-VELAQIFLPTEKSFRL 141
>UniRef50_Q15TC4 Cluster: DNA polymerase III, epsilon subunit; n=1;
Pseudoalteromonas atlantica T6c|Rep: DNA polymerase III,
epsilon subunit - Pseudoalteromonas atlantica (strain
T6c / BAA-1087)
Length = 769
Score = 40.3 bits (90), Expect = 0.059
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 16/107 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV D+ETTG + +ITE+ + V I S + + S ++NPE+++ +
Sbjct: 604 YVVVDVETTG---GCKPGHRITEIGAVKV------IDSKV--VDSWSSLINPERRVPHFI 652
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 113
LTG++N+ +++AP F + + + +F+ + VAHN N FDY
Sbjct: 653 TRLTGISNDMVEDAPLFCEVIDDLEAFMQD----CIFVAHNVN-FDY 694
>UniRef50_Q038V8 Cluster: Rad3-related DNA helicase; n=1;
Lactobacillus casei ATCC 334|Rep: Rad3-related DNA
helicase - Lactobacillus casei (strain ATCC 334)
Length = 928
Score = 40.3 bits (90), Expect = 0.059
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 15/121 (12%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T + D+ETTG ++ ++ I C L +Q G I+ +S ++NP++ +
Sbjct: 5 TIFAVVDLETTGTSVKDGDRM-IQFGCAL--------MQHG-KIIQTISQLVNPDRSVPV 54
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ LTGL L AP F++ I L++L VAHN N FDY L AE G
Sbjct: 55 AIQRLTGLDPNRLVAAPYFEE----IAKTLHQLLTDTVFVAHNVN-FDYPFLNAEFERVG 109
Query: 125 I 125
+
Sbjct: 110 L 110
>UniRef50_Q8RA32 Cluster: DNA polymerase III polC-type; n=7;
Clostridia|Rep: DNA polymerase III polC-type -
Thermoanaerobacter tengcongensis
Length = 1401
Score = 40.3 bits (90), Expect = 0.059
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V FDIETTGL +I E+ + + + + +NP+ I +
Sbjct: 388 FVVFDIETTGL---SNINDEIIEIGAVKIKNKKI--------VDTFETFVNPQIPISSFI 436
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+ +K+AP ++ + FL E K LVAHN N FD + ++ G+
Sbjct: 437 TKLTGIDESMVKDAPLIEE---VLPKFL-EFAKGAVLVAHNAN-FDVSFIKSKAKKLGLT 491
Query: 127 LPSDLL 132
+ + +L
Sbjct: 492 VENTVL 497
>UniRef50_UPI0000ECCA32 Cluster: UPI0000ECCA32 related cluster; n=1;
Gallus gallus|Rep: UPI0000ECCA32 UniRef100 entry -
Gallus gallus
Length = 480
Score = 39.9 bits (89), Expect = 0.078
Identities = 27/133 (20%), Positives = 55/133 (41%)
Query: 147 TQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLN 206
TQK++ K + +D + E + ++ E + SK + E S +E L
Sbjct: 175 TQKTVEFKSDGQAEDGETATELTETEEQSKQEEHSSRPSTACSKSKAEEKENSTREESLL 234
Query: 207 QQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDC 266
Q +C+N + ++ + + S ++N ++ E L K L++ A +
Sbjct: 235 QDQCSNCENDQEKGEENENTENSRLVENGEKEEAEAVNEALLKENLEEAADQLSTTIETN 294
Query: 267 VILIECVLALRDE 279
V +C L+D+
Sbjct: 295 VSDADCGTELKDD 307
>UniRef50_Q0EZC1 Cluster: Probable DNA polymerase III (Epsilon
chain) protein; n=1; Mariprofundus ferrooxydans
PV-1|Rep: Probable DNA polymerase III (Epsilon chain)
protein - Mariprofundus ferrooxydans PV-1
Length = 300
Score = 39.5 bits (88), Expect = 0.10
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ D ETTGL N ++ E+ + V + + SG + +NPE+ I +VV
Sbjct: 56 IMLDTETTGL--SPLNGDRMVEIGAIEVL--NRKVLSGDKHV--FHRYINPERNIPDEVV 109
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
+ G+ N +K+ PTF++ A + F+ + LV HN FD ++ E
Sbjct: 110 RIHGIDNAKVKDQPTFREIAQEFLDFI----EGATLVIHNA-PFDLGFIMNELRINNFPE 164
Query: 128 PSDLLCIDSLIGFRK 142
+ ID+L+ R+
Sbjct: 165 IGHMQVIDTLVFARE 179
>UniRef50_P47729 Cluster: DNA polymerase III polC-type; n=1;
Mycoplasma pulmonis|Rep: DNA polymerase III polC-type -
Mycoplasma pulmonis
Length = 1435
Score = 39.5 bits (88), Expect = 0.10
Identities = 45/153 (29%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV +DIETTGL + EL S I++G I+ F + P+ K+
Sbjct: 404 YVVYDIETTGL------SPMLNELIQFGAS----VIKNG-RIIETHHFFIKPKSKLDSFT 452
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+T E L+ ++ I S K +VAHN +FD+ L + D I
Sbjct: 453 TKLTGITQEHLEKGYELQEALEKISSIF----KARIMVAHNA-AFDHNFLKQKFIDNNIE 507
Query: 127 LPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSK 159
+++ ID+L K+L +S L SK
Sbjct: 508 F-EEMISIDTL-NLAKVLNPIYRSYRLGEVASK 538
>UniRef50_Q2Q0H1 Cluster: Putative DNA polymerase type III,
exonuclease domain; n=1; uncultured organism
HF70_19B12|Rep: Putative DNA polymerase type III,
exonuclease domain - uncultured organism HF70_19B12
Length = 270
Score = 39.1 bits (87), Expect = 0.14
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 10 FDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVL 69
FD ETTGL K +I + F+ D+D S + ++ +++P KI + +
Sbjct: 12 FDTETTGL---NPRKDRILQYAFIG---RDVD-GSSVCQVE----LIDPGIKIPEASMNV 60
Query: 70 TGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPS 129
G++NE + +F +N I EL +V HN N+FD++ + E G +PS
Sbjct: 61 HGISNEDVTGRGSFGMHSNDIA----ELIDGAIIVGHNINAFDWRFIEFEFMRVGEAVPS 116
Query: 130 DLLCIDSL 137
+D+L
Sbjct: 117 PYALVDTL 124
>UniRef50_Q89WN8 Cluster: DNA polymerase III epsilon chain; n=7;
Alphaproteobacteria|Rep: DNA polymerase III epsilon
chain - Bradyrhizobium japonicum
Length = 239
Score = 39.1 bits (87), Expect = 0.14
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NPE+ + + + GL+ E L P F + A+A + F+ + P LV HN SFD
Sbjct: 43 INPERDMPAEAFAVHGLSAEFLSTKPVFHEVADAFLEFIGDAP----LVIHNA-SFDISF 97
Query: 116 LLAE 119
+ AE
Sbjct: 98 INAE 101
>UniRef50_Q30T43 Cluster: Exonuclease; n=1; Thiomicrospira
denitrificans ATCC 33889|Rep: Exonuclease -
Thiomicrospira denitrificans (strain ATCC 33889 / DSM
1351)
Length = 234
Score = 39.1 bits (87), Expect = 0.14
Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+F D+ETTGL N KI + + VS + K V N KKI
Sbjct: 3 IFLDVETTGL----ENGDKICSIGIICVSETAI--------FSKYELV-NEGKKISSKAS 49
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 117
+ +TNE +K+ P FK + N + ++AHN N FD K+LL
Sbjct: 50 SINHITNEMIKDKPKFKDSKTWEILHENN-NQSSTIIAHNVN-FDLKMLL 97
>UniRef50_Q2GDU1 Cluster: DNA polymerase III, epsilon subunit; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: DNA polymerase
III, epsilon subunit - Neorickettsia sennetsu (strain
Miyayama)
Length = 228
Score = 39.1 bits (87), Expect = 0.14
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 14/112 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
V D ETTGL +N ++ E+ + V D I + LNPE++I +
Sbjct: 7 VILDTETTGLDM--KNGDRVIEIGCVEVV--DFRITGEI-----FHIYLNPEREISKEAT 57
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
+ G+T E L ++P F A+ + F++ +VAHN SFD + L +E
Sbjct: 58 RVHGITFEQLADSPKFIDIADDFLKFIDSSE----IVAHNA-SFDIRFLNSE 104
>UniRef50_A0L3L4 Cluster: DNA polymerase III, epsilon subunit; n=1;
Magnetococcus sp. MC-1|Rep: DNA polymerase III, epsilon
subunit - Magnetococcus sp. (strain MC-1)
Length = 237
Score = 39.1 bits (87), Expect = 0.14
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NPE++I D + G+T+ + N+P FK+ + ++F+ E LV HN FD +
Sbjct: 43 VNPEREIPADATKVHGITDADVANSPKFKEIYHEFLAFIGE----DSLVIHNA-EFDMRF 97
Query: 116 LLAE 119
L AE
Sbjct: 98 LNAE 101
>UniRef50_Q8IAP9 Cluster: Putative uncharacterized protein
MAL8P1.136; n=6; Plasmodium|Rep: Putative
uncharacterized protein MAL8P1.136 - Plasmodium
falciparum (isolate 3D7)
Length = 739
Score = 39.1 bits (87), Expect = 0.14
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 197 EKSKKENDLNQQKCTNLKKGRKNKNDLTTQ---DQSLSIQNKSTKKRE 241
EK KK+ + ++K KKG+KNK+DLT++ S + +++S KRE
Sbjct: 189 EKEKKKKKIKEKKKRKKKKGKKNKSDLTSESDLSSSYNSEDRSQSKRE 236
>UniRef50_Q8U4P3 Cluster: Putative uncharacterized protein PF0037;
n=1; Pyrococcus furiosus|Rep: Putative uncharacterized
protein PF0037 - Pyrococcus furiosus
Length = 564
Score = 39.1 bits (87), Expect = 0.14
Identities = 20/73 (27%), Positives = 39/73 (53%)
Query: 24 KTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTF 83
K + EL F+ S+D ++ GL ++++S V ++ + + +LT + N +L P F
Sbjct: 176 KDVLRELTFIIPSKDKFVLELGLDILEEISNVKITQETLDDFIAILTRVKNIALYGPPEF 235
Query: 84 KQRANAIVSFLNE 96
++RA I + E
Sbjct: 236 RERAKVIAEKIEE 248
>UniRef50_Q5KXX5 Cluster: ATP-dependent DNA helicase; n=2;
Geobacillus|Rep: ATP-dependent DNA helicase -
Geobacillus kaustophilus
Length = 909
Score = 38.7 bits (86), Expect = 0.18
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T +V D+ETTG + +I +L +AV D L ++ + + NPE+ I
Sbjct: 3 TRFVIIDLETTGNG--PKKGDRIIQLG-MAVVEDGLIVE-------RFASFFNPEQPIPL 52
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ LT + E ++ AP F +A I + ++ VAHN + FD L AE AG
Sbjct: 53 FIQQLTNINEEMVEGAPLFADKAGEIAALMH----GAYFVAHNVD-FDLPFLQAELERAG 107
>UniRef50_Q1UAN0 Cluster: DNA polymerase III, epsilon subunit; n=1;
Lactobacillus reuteri 100-23|Rep: DNA polymerase III,
epsilon subunit - Lactobacillus reuteri 100-23
Length = 283
Score = 38.7 bits (86), Expect = 0.18
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T+YV D ETTGL KI +L + D L + ++NP+ +
Sbjct: 13 TSYVSVDTETTGL--YPMYGDKIIQLSAIKYIDDKL--------VDTFDTLINPDGS-NN 61
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
+ + ++ SLKN PTF + V+F+ +LP V HN SFD+ L +E
Sbjct: 62 NAKSVNNISESSLKNQPTFDEVIGDFVNFVEDLP----WVGHN-LSFDFSFLKSE 111
>UniRef50_Q11UG6 Cluster: DNA polymerase III, epsilon subunit; n=1;
Cytophaga hutchinsonii ATCC 33406|Rep: DNA polymerase
III, epsilon subunit - Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469)
Length = 449
Score = 38.7 bits (86), Expect = 0.18
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 114
++NPE++I + LTG+ E + +AP F A I F + VAHN N FDY
Sbjct: 40 LINPERRIPVFITSLTGIDTEMVADAPVFADVAREITDFTRD----SVFVAHNVN-FDYT 94
Query: 115 ILLAE 119
+ E
Sbjct: 95 FVKKE 99
>UniRef50_A4CM07 Cluster: DNA polymerase III, epsilon subunit; n=1;
Robiginitalea biformata HTCC2501|Rep: DNA polymerase
III, epsilon subunit - Robiginitalea biformata HTCC2501
Length = 456
Score = 38.7 bits (86), Expect = 0.18
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 16/127 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y DIETTG +ITE+ + + + S ++NP +I +
Sbjct: 2 YTVVDIETTGNGIYGN---RITEIALFNIDQGRI--------ADSYSTLVNPGCEIPAFI 50
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+T ++NAP F + A I +F + VAH+ N FDY I+ E G+
Sbjct: 51 TGLTGITTAMVRNAPDFSEIAPKIDAFSSGR----VFVAHSVN-FDYPIVRKEFERCGLD 105
Query: 127 LPSDLLC 133
LC
Sbjct: 106 FGRKKLC 112
>UniRef50_A3I8T8 Cluster: Bifunctional ATP-dependent DNA
helicase/DNA polymerase III subunit epsilon; n=1;
Bacillus sp. B14905|Rep: Bifunctional ATP-dependent DNA
helicase/DNA polymerase III subunit epsilon - Bacillus
sp. B14905
Length = 914
Score = 38.7 bits (86), Expect = 0.18
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NP K I + LT +TNE +K++ F++ A+ ++ EL VAHN + FD
Sbjct: 37 INPGKAIPSFIQDLTHITNEDVKDSYPFEEHAD----YIYELLADCVFVAHNAD-FDLSF 91
Query: 116 LLAECNDAGI 125
L AE AG+
Sbjct: 92 LQAEFKRAGL 101
>UniRef50_Q9PJK6 Cluster: DNA polymerase III, epsilon subunit,
putative; n=3; Chlamydia|Rep: DNA polymerase III,
epsilon subunit, putative - Chlamydia muridarum
Length = 250
Score = 38.3 bits (85), Expect = 0.24
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V D ETTGL + K ++ E + + D++ I + F+++PE+ + +
Sbjct: 9 FVCLDCETTGLDVK---KDRVIEFAAIRFTFDEV--------IDSVEFLIHPERAVSAES 57
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG-I 125
+ +++ LK+ P F + + I F E +V H+ FD ++L E G
Sbjct: 58 QKIHKISDAMLKDKPKFSEVFSTIKGFFKERD---YIVGHH-VGFDLQVLSQESERLGET 113
Query: 126 LLPSDLLCIDSL 137
LLP ID+L
Sbjct: 114 LLPKQHYVIDTL 125
>UniRef50_Q9CGW0 Cluster: DNA polymerase III, epsilon chain; n=3;
Lactococcus lactis|Rep: DNA polymerase III, epsilon
chain - Lactococcus lactis subsp. lactis (Streptococcus
lactis)
Length = 277
Score = 38.3 bits (85), Expect = 0.24
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 14/145 (9%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV FD ETTG Q K +I ++ AV D+ + + + V N + ++
Sbjct: 5 YVVFDFETTGFSAQ---KNEIIQIG--AVKYDENNQEQA----RFNQLVKNQRSYVSTEI 55
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG+ L N PT ++ + F+ K LVAHN FD L D I
Sbjct: 56 TQLTGIKPADLLNQPTIEEILPEFLDFI----KGHLLVAHNA-PFDISFLYQAIIDCAIT 110
Query: 127 LPSDLLCIDSLIGFRKILKTTQKSL 151
D+L +K+L + +L
Sbjct: 111 DVEAFRVYDTLAESKKLLTMSSYAL 135
>UniRef50_Q4JWC2 Cluster: Putative exonuclease; n=1;
Corynebacterium jeikeium K411|Rep: Putative exonuclease
- Corynebacterium jeikeium (strain K411)
Length = 198
Score = 38.3 bits (85), Expect = 0.24
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ D+ETTGL QE +I E+ L + +L K + +LNP + ++
Sbjct: 13 IVIDLETTGLRPQEE---RIIEIAALHIRNGELQ--------DKYTTLLNPNLSVPQEIT 61
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNE 96
LTG+++ L + PTF + +++FL +
Sbjct: 62 DLTGISDGLLADKPTFSEVMPELLNFLRD 90
>UniRef50_A5Z9S3 Cluster: Putative uncharacterized protein; n=1;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 1474
Score = 38.3 bits (85), Expect = 0.24
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 18/138 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV FD+ETTG KI E+ + V + I + S +NPE I +
Sbjct: 409 YVVFDLETTGF---SAKSDKIIEIGAVKVENGKI--------IDRFSTFVNPEIPIPFRI 457
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LT + +E + +AP ++ I+ E K +VAHN + FD + A C
Sbjct: 458 EKLTSINDEMVIDAPKIEE----ILPQFMEFCKDSVMVAHN-SDFDMSFIEANCKRQD-- 510
Query: 127 LPSDLLCIDSLIGFRKIL 144
L D ID++ R ++
Sbjct: 511 LECDFTVIDTVAMSRYLI 528
>UniRef50_A5CE47 Cluster: DNA polymerase III epsilon chain; n=1;
Orientia tsutsugamushi Boryong|Rep: DNA polymerase III
epsilon chain - Orientia tsutsugamushi (strain Boryong)
(Rickettsia tsutsugamushi)
Length = 222
Score = 38.3 bits (85), Expect = 0.24
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 13/112 (11%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ D ET+GL ++ ++ I E+ + + D +I++ + +NPE+ I +
Sbjct: 5 IVLDTETSGLDHKQGHR--IIEIGAVELDSDCTEIRN------TFHYYINPERDISKEAY 56
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
+ GL+ + L + P F++ + + F++ L+ HN N FD + L +E
Sbjct: 57 KVHGLSRDFLSDKPKFREIVDEFLQFIDRAQ----LIMHNAN-FDMQFLNSE 103
>UniRef50_A2PLZ2 Cluster: Gp39; n=2; Vibrio cholerae|Rep: Gp39 -
Vibrio cholerae MAK 757
Length = 185
Score = 38.3 bits (85), Expect = 0.24
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ D ETTGL R L VS +D Q+G IK S ++NP I P+V
Sbjct: 10 IILDTETTGLDSDAR---------ILEVSI--IDAQTG---IKLYSSLVNPLCSISPEVT 55
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNE 96
+ G+TN+ + + PTF + N I +L++
Sbjct: 56 AIHGITNDMVIDMPTFDKVWNDIKGYLSD 84
>UniRef50_Q6X0M1 Cluster: Putative uncharacterized protein; n=1;
Phytophthora sojae|Rep: Putative uncharacterized protein
- Phytophthora sojae
Length = 882
Score = 38.3 bits (85), Expect = 0.24
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 164 SELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKE---------NDLNQQKCTNLK 214
SE+ EL + E+ E+ID L S+ + E +KE +L Q+KC L+
Sbjct: 187 SEVEERELKLQLEHEEKIDALVGELSQRVRREGELKEKELCEKYEQQVTEL-QKKCAALE 245
Query: 215 KGRKNKNDLTTQDQSLSIQNKSTKKR--EFTLTGLYKRLLDKDAVNAHRAEDDCVILIE 271
++ + T DQ ++ + ST+ + E L KRL D +A A AE D L+E
Sbjct: 246 LELRSGKEKTLHDQEVTQEQYSTRIQGLESQCAELQKRLEDSEAQRAVEAETDAAKLVE 304
>UniRef50_P54394 Cluster: Probable ATP-dependent helicase dinG
homolog; n=5; Bacillus|Rep: Probable ATP-dependent
helicase dinG homolog - Bacillus subtilis
Length = 931
Score = 38.3 bits (85), Expect = 0.24
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V D+ETTG + KI ++ + + + ++ S +NP K I +
Sbjct: 6 FVVIDVETTGN--SPKKGDKIIQIAAVVIENGQIT--------ERFSKYINPNKSIPAFI 55
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LTG++N+ ++N F+ A + L+ VAHN + FD + E + AG
Sbjct: 56 EQLTGISNQMVENEQPFEAVAEEVFQLLD----GAYFVAHNIH-FDLGFVKYELHKAGFQ 110
Query: 127 LP 128
LP
Sbjct: 111 LP 112
>UniRef50_Q47S15 Cluster: Exonuclease; n=1; Thermobifida fusca
YX|Rep: Exonuclease - Thermobifida fusca (strain YX)
Length = 516
Score = 37.9 bits (84), Expect = 0.32
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKI 62
R TY D+ETTGL N + +C +AV R ++ + + S ++NP I
Sbjct: 17 RTLTYAVLDLETTGL-----NPKRGARVCEIAVVR----MRGDGTVLDEYSTLVNPGSSI 67
Query: 63 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECND 122
G+T+ +K AP+F Q A ++++L+ +V + F+ K L AE
Sbjct: 68 RNSA--FHGITDTWVKTAPSFDQVAGDLLAYLDG-----AIVVGHKLDFEEKFLAAEFAR 120
Query: 123 AGILL 127
G+ L
Sbjct: 121 LGVPL 125
>UniRef50_Q05FQ3 Cluster: DNA polymerase III epsilon subunit; n=1;
Candidatus Carsonella ruddii PV|Rep: DNA polymerase III
epsilon subunit - Carsonella ruddii (strain PV)
Length = 181
Score = 37.9 bits (84), Expect = 0.32
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+F D+ETTGL F E I C +++ +G + NPE KI
Sbjct: 5 IFLDVETTGL-FVEHGDRIIEIGC--------VEVINGHLTGRVFHSYFNPEVKITQGAF 55
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG----NSFDYKILLAECNDA 123
+ G+ ++ L P F ++ N + F+N ++AHN N + +I L
Sbjct: 56 NVHGIKDDFLLLKPMFYEKINEFIGFINN----STIIAHNAKFDINFINKEIYLTNFKIK 111
Query: 124 GILLPSDLLCIDSLIGFRKIL---KTTQKSLPLKMNTSKD 160
I +++L DSL+ FRK+ K L LK N K+
Sbjct: 112 KIQNYANIL--DSLLLFRKLYPRKKNNLNDLCLKFNLIKN 149
>UniRef50_A1SNC5 Cluster: Exonuclease, RNase T and DNA polymerase
III; n=1; Nocardioides sp. JS614|Rep: Exonuclease, RNase
T and DNA polymerase III - Nocardioides sp. (strain
BAA-499 / JS614)
Length = 405
Score = 37.9 bits (84), Expect = 0.32
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 18/132 (13%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 63
+T Y D+ETTGL F +++ +I E+ + VS D I+ ++ + ++NP++ +
Sbjct: 1 MTGYTIIDLETTGL-FPQKH-DRIVEIGLIEVS-DSGAIE------REWATLVNPQRDVG 51
Query: 64 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 123
P + G+T + +APTF++ A ++ L LVAHN FD + L E A
Sbjct: 52 P--THIHGITARDVLDAPTFQEVAPYLIGSL----AGRTLVAHNAR-FDTQFLDYEFERA 104
Query: 124 --GILLPSDLLC 133
G P+ LC
Sbjct: 105 SVGTRPPTPSLC 116
>UniRef50_A4VDG4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 2356
Score = 37.9 bits (84), Expect = 0.32
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 171 LDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSL 230
LD+ I L A K + +DD S K N ++Q+ ++ K K K+ +DQ L
Sbjct: 866 LDIDKNEQTAIKKLLAEEKKQSILDD--SPKSNSQSKQQASDKKSSSKFKSYEAFKDQEL 923
Query: 231 SIQNKSTKKREFTLTGLYK 249
S + +K + LT +Y+
Sbjct: 924 SSDEEEKEKEDGLLTEIYE 942
>UniRef50_Q88WB1 Cluster: ATP-dependent helicase DinG; n=2;
Lactobacillus|Rep: ATP-dependent helicase DinG -
Lactobacillus plantarum
Length = 934
Score = 37.5 bits (83), Expect = 0.42
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
TTY DIETTG ++ ++ I ++ V + + I + +NP +
Sbjct: 5 TTYAVVDIETTGTSVKDGDR--IIQIGCAFVKNNKI--------INTFATDVNPLTTVPA 54
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ LTG++N ++ AP F A + S L + VAHN N FD + +E G
Sbjct: 55 VIENLTGISNARVRKAPPFDDLAGTVYSLL----QGTVFVAHNVN-FDLPFINSELQRVG 109
Query: 125 I-LLPSDLLCIDSLIGFRKILKTTQKSLPLK 154
LP + +D+ + +IL T S L+
Sbjct: 110 YPELP--IQAVDT-VSLSQILLPTASSFRLR 137
>UniRef50_Q6MC14 Cluster: Putative DNA polymerase III, epsilon
chain, mutD; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative DNA polymerase III, epsilon chain,
mutD - Protochlamydia amoebophila (strain UWE25)
Length = 216
Score = 37.5 bits (83), Expect = 0.42
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
++P I P+ + +T+E + NA +F A+ F+ + L+AHN ++FD
Sbjct: 19 VHPGFPIPPESTAIHHITDEMVANAGSF---ADVGAEFVEFCAGEVVLIAHNNDNFDLHF 75
Query: 116 LLAECNDAGILLPSDLLCIDSL 137
L E ++LP+ +DSL
Sbjct: 76 LRHEFERNQLILPTHWKFLDSL 97
>UniRef50_Q081L5 Cluster: DNA polymerase III, epsilon subunit; n=5;
Gammaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Shewanella frigidimarina (strain NCIMB 400)
Length = 242
Score = 37.5 bits (83), Expect = 0.42
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NP + I + + + G+TN+ + N P F Q A + F++ +VAHN N FD
Sbjct: 55 INPGQAIDEEAIQVHGITNDRVANEPRFHQIAKDFIDFIDGAE----IVAHNAN-FDVSF 109
Query: 116 LLAECNDAGILLP--SDLLCIDSLIGFRKILKTTQKS 150
+ E + + P D+ I + K L QK+
Sbjct: 110 MDHEFSKLNPIGPKTKDICSILDSLAIAKRLHPGQKN 146
>UniRef50_A4TVW6 Cluster: DNA polymerase III, epsilon subunit; n=4;
Magnetospirillum|Rep: DNA polymerase III, epsilon
subunit - Magnetospirillum gryphiswaldense
Length = 677
Score = 37.5 bits (83), Expect = 0.42
Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 13/131 (9%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 61
+R T++ FD ETTGL Q +I ++ + + I SG + + ++NP +
Sbjct: 479 LRSLTFIVFDTETTGL--QPSQGDQIVQIGAVRIVNGR--ILSG----ESFNRIVNPGRV 530
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECN 121
I P+ + G+T++ +K+ P ++ LVAHN +FD K L
Sbjct: 531 IPPESIKFHGITDDMVKDKPPL----GVVLPQFKAFAADAVLVAHNA-AFDLKFLRMNER 585
Query: 122 DAGILLPSDLL 132
G+ + +L
Sbjct: 586 QFGLKFDNPVL 596
>UniRef50_A1K1I0 Cluster: DNA-directed DNA polymerase; n=24;
Proteobacteria|Rep: DNA-directed DNA polymerase -
Azoarcus sp. (strain BH72)
Length = 231
Score = 37.5 bits (83), Expect = 0.42
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 4 ITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIH 63
+ TY D ETTG+ + + TE+ + V + I + ++N +
Sbjct: 28 LDTYAVIDFETTGMA--PEHGARPTEIAVVLVRNGCV--------IDRYQSLMNAGVHVP 77
Query: 64 PDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDA 123
++ LTG+TN ++ AP Q F+ LVAHN +FD K AE +
Sbjct: 78 YEIQALTGITNAMVRAAPPLAQVMAQAADFVGS----HALVAHNA-AFDRKFWDAELDRL 132
Query: 124 GILLPSDLLCIDSLIGFRKI 143
G +D +C SL+ R++
Sbjct: 133 GRRREADFVC--SLLLSRRV 150
>UniRef50_A1YZY0 Cluster: Gram-positive type DNA polymerase III
alpha subunit; n=2; unclassified Myoviridae|Rep:
Gram-positive type DNA polymerase III alpha subunit -
Burkholderia ambifaria phage BcepF1
Length = 197
Score = 37.5 bits (83), Expect = 0.42
Identities = 45/161 (27%), Positives = 65/161 (40%), Gaps = 22/161 (13%)
Query: 7 YVFFDIETTGLPFQER----NKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKI 62
+ FD ETTGLP + +I E F + D DI + L F NP +
Sbjct: 3 FTVFDTETTGLPSHPLAPLDRQPRIIE--FAGIVTDGRDI------LHTLEFRCNPGVAL 54
Query: 63 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKP--------ICLVAHNGNSFDYK 114
+ +TGLT+ L++ P + SF + P P VAHN SFD
Sbjct: 55 EEIITKITGLTDADLRDQPDISHFFGELKSFFGKEPMPHVFGEKPKFARVAHN-LSFDRN 113
Query: 115 ILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKM 155
+L + G L D+ D+L+ T Q P+K+
Sbjct: 114 LLDYDLKRRGKTL-DDIGFNDALMICTVEQTTPQFGRPMKL 153
>UniRef50_Q4QGE6 Cluster: Mitochondrial DNA polymerase I protein B,
putative; n=3; Leishmania|Rep: Mitochondrial DNA
polymerase I protein B, putative - Leishmania major
Length = 1429
Score = 37.5 bits (83), Expect = 0.42
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 3 RITTY--VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSF--VLNP 58
++ TY VFFDIETTGL + I E+ PI+ +F ++NP
Sbjct: 758 KLKTYRVVFFDIETTGL---NPSTDAIVEVAMF-------------DPIENSTFHTLVNP 801
Query: 59 EKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKP-------ICLVAHNGNSF 111
++ I P V + +TN +++APT A +I +L L K + LV HN S
Sbjct: 802 QRPITPRTVGIHHITNAMVRDAPTVDVVAKSIGQYL-RLDKASYNPHEILVLVGHNVFSV 860
Query: 112 DYKIL--LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSK 159
D +L EC+ L L C DSL +L + L +M T +
Sbjct: 861 DEPMLRRALECHAPECQLDGILFC-DSL----ALLNAHRSELRWRMRTKR 905
>UniRef50_Q9ZHF6 Cluster: DNA polymerase III polC-type; n=3;
Thermotogales|Rep: DNA polymerase III polC-type -
Thermotoga maritima
Length = 1367
Score = 37.5 bits (83), Expect = 0.42
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
T+V D ETTGL Q + E+ + + IQ G + + ++ P ++I
Sbjct: 357 TFVVLDFETTGLDPQ------VDEIIEIGAVK----IQGG-QIVDEYHTLIKPSREISRK 405
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+TG+T E L+N + ++ + FL + +VAHN N FDY+ L
Sbjct: 406 SSEITGITQEMLENKRSIEEVLPEFLGFLED----SIIVAHNAN-FDYRFL 451
>UniRef50_Q3VN57 Cluster: Exonuclease; n=2; Chlorobium/Pelodictyon
group|Rep: Exonuclease - Pelodictyon phaeoclathratiforme
BU-1
Length = 190
Score = 37.1 bits (82), Expect = 0.55
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 7 YVFFDIETTGLPFQER-------NKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPE 59
Y+FFD ETTGLP R N ++ +L +L+ + + SG IK FV
Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFV---- 57
Query: 60 KKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
I V + G++ + + K + SF + LVAHN SFD KI+ +E
Sbjct: 58 --IPSSAVQIHGISTQ--RALLEGKPLGQVLQSFYELVADAEVLVAHN-ISFDEKIVGSE 112
Query: 120 CNDAGI 125
AG+
Sbjct: 113 LIRAGM 118
>UniRef50_Q1K1G2 Cluster: DNA polymerase III, epsilon subunit; n=4;
Proteobacteria|Rep: DNA polymerase III, epsilon subunit
- Desulfuromonas acetoxidans DSM 684
Length = 217
Score = 37.1 bits (82), Expect = 0.55
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 114
++NP ++ + TG+TN+ L+ AP ++ + F+ P LVAHN SFD +
Sbjct: 48 LMNPGFRVSSFIEEFTGITNDELRRAPRCEEVMHQFSEFIGGAP----LVAHNA-SFDQR 102
Query: 115 ILLAE 119
L +E
Sbjct: 103 FLKSE 107
>UniRef50_Q04A97 Cluster: DNA polymerase III, epsilon subunit
related 3'-5' exonuclease; n=2; Lactobacillus
delbrueckii subsp. bulgaricus|Rep: DNA polymerase III,
epsilon subunit related 3'-5' exonuclease -
Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC
BAA-365)
Length = 261
Score = 37.1 bits (82), Expect = 0.55
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 20/114 (17%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKI 62
++ Y FD+ETTG KI ++ L V RDD + K S +NP +KI
Sbjct: 4 KLHDYTVFDLETTG--------KKIIQIGALKV-RDD-------QTVAKFSTYVNPLEKI 47
Query: 63 HPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+ V LTG++N AP + + F+ + LV HN SFD +L
Sbjct: 48 NDYVSHLTGISNYQTDAAPLIDEVMPDFLDFVGD----DTLVGHNILSFDCNVL 97
>UniRef50_A6LLU9 Cluster: DNA polymerase III, alpha subunit; n=1;
Thermosipho melanesiensis BI429|Rep: DNA polymerase III,
alpha subunit - Thermosipho melanesiensis BI429
Length = 1362
Score = 37.1 bits (82), Expect = 0.55
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 19/154 (12%)
Query: 1 MVRITTYVFFDIETTGLPFQERNKTKITELCFL-AVSRDDLDIQSGLPPIKKLSFVLNPE 59
M+ TY FD+ETTG K E+ + AV D + I S + P
Sbjct: 338 MLDDVTYTVFDLETTG------TNAKFDEIIEIGAVKYRDGKV------INTFSSFVKPT 385
Query: 60 KKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
K I LTG+T+E +K+A + ++ + F++ LVAHN + FDY + E
Sbjct: 386 KSISEFTQKLTGITDEMVKDAKSIEEVFPEFLKFID----GTVLVAHNAD-FDYG-FIRE 439
Query: 120 CNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 153
N D +D+L + +L+ KS L
Sbjct: 440 VNRRLYNKELDFAYLDTLKLSKVLLRGKVKSFGL 473
>UniRef50_Q4Y5W2 Cluster: Putative uncharacterized protein; n=3;
Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 366
Score = 37.1 bits (82), Expect = 0.55
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 141 RKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSK 200
+KI + +K K+ TS D+ +E+ VS + +L +KD D+++ K
Sbjct: 40 QKIDNSDKKQEDEKLKTSNLDTINEINASSAKVSNSDTTNDIDLKEDQTKDN--DNKEKK 97
Query: 201 KENDLNQQKCT--NLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVN 258
K + N K + N K +NK+DL +++++ S + + K ++ + K L KD N
Sbjct: 98 KSTEKNDDKISEKNGDKASENKSDL-SENKNASQNSDTLKDKKSNPSNSEKDNLKKDETN 156
Query: 259 AHRAED 264
+ D
Sbjct: 157 LSQGND 162
>UniRef50_Q24F68 Cluster: Zinc finger protein; n=1; Tetrahymena
thermophila SB210|Rep: Zinc finger protein - Tetrahymena
thermophila SB210
Length = 902
Score = 37.1 bits (82), Expect = 0.55
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 154 KMNTSKDDSASELLWPELDVSTE-NWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTN 212
K N SK+ + E + E +WE ++ ++D DDEK KK+++ QK N
Sbjct: 370 KSNKSKNQKKQSIKKEEEEQEEEESWESEED---QDNEDDDDDDEKEKKDSNKVAQKSKN 426
Query: 213 LKKGRKNKNDLT---TQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAED 264
K+ +KN+ +LT D +NK T ++ TL L +++ VN+ E+
Sbjct: 427 GKENQKNQKNLTDFKNIDWKNLDENKLTNQQLMTLYATI--LQNENEVNSQDEEE 479
>UniRef50_UPI00015B5C05 Cluster: PREDICTED: similar to putative S1
RNA binding domain protein; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to putative S1 RNA
binding domain protein - Nasonia vitripennis
Length = 260
Score = 36.7 bits (81), Expect = 0.73
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 157 TSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKG 216
T+ D ELL PE+D + ++NL A +D E KE +K KK
Sbjct: 137 TTPDGKKYELL-PEIDEEEAVPQPVNNLEA-------VDSESRSKEKKHKSKKSKKRKKS 188
Query: 217 RKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCV 267
+ +KN+ + D S S K+ KK++ + K+ +D+ + + D V
Sbjct: 189 KTSKNNDSDSDDSDSSDEKTKKKKKKSKVKKSKKKRRRDSSSDSDSSDSSV 239
>UniRef50_A4ECT2 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 964
Score = 36.7 bits (81), Expect = 0.73
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ D ETTGL Q+ EL ++ +R SG + + ++P++ I ++
Sbjct: 39 IVLDTETTGLSVQDN------ELIEISAAR-----LSGREVVDRFDTFVHPKQLIPAEIT 87
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFD 112
LT +TN + +AP+ + A+ F+ P ++AHN +FD
Sbjct: 88 ELTSITNADVADAPSAVEAVAALADFVGGCP----VIAHNA-TFD 127
>UniRef50_A0NJE4 Cluster: DNA helicase, Rad3-related family; n=2;
Oenococcus oeni|Rep: DNA helicase, Rad3-related family -
Oenococcus oeni ATCC BAA-1163
Length = 489
Score = 36.7 bits (81), Expect = 0.73
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 49 IKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNG 108
I ++NP KI +V LTG+ NE ++NAP F+ A I L+ VAHN
Sbjct: 38 INNFQTMVNPGVKIPEQIVDLTGIKNEDVENAPYFEDLARMIHDQLS----GTVFVAHNV 93
Query: 109 NSFDYKILLAE 119
+D+ L E
Sbjct: 94 R-YDFPYLNGE 103
>UniRef50_Q5CPW3 Cluster: Large uncharacterized protein; n=2;
Cryptosporidium|Rep: Large uncharacterized protein -
Cryptosporidium parvum Iowa II
Length = 2352
Score = 36.7 bits (81), Expect = 0.73
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 103 LVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLI-GFRKILKTTQKSLPLKMNTSKDD 161
LV++ G+ KI + N I + S ++ ++S++ F I+K S PL+ NT+K
Sbjct: 888 LVSYIGSG-QIKIKRSIPNTNNIQIKSFIVRLESILHAFSAIIKKGLTSFPLRPNTTK-- 944
Query: 162 SASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKN 221
++ +L+ N +EI +L + IDDE D+ + N + N+N
Sbjct: 945 ITEKMGNDDLNRMYNNEDEIRSLLEMVNASLKIDDE------DVINSELNNRELVLGNEN 998
Query: 222 DLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVILIE 271
D Q + L + + F +TG ++ L+D N H+ D I+I+
Sbjct: 999 DYFEQTRILF---DAVMLKIFKVTGEFEGLMDIYLRNCHQRLADQRIMID 1045
>UniRef50_Q4XLK9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 429
Score = 36.7 bits (81), Expect = 0.73
Identities = 26/85 (30%), Positives = 35/85 (41%)
Query: 156 NTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKK 215
NT KDD+ E + N E DN C + DT + +E KK N+ K N
Sbjct: 245 NTKKDDNKCCNTENEDNTFDNNNVEKDNPCDASRNDTSLANESVKKCVGDNENKIINRLN 304
Query: 216 GRKNKNDLTTQDQSLSIQNKSTKKR 240
G K+ L + KS KK+
Sbjct: 305 GNKDSKSLKIEQYFYFPSTKSEKKK 329
>UniRef50_Q241C7 Cluster: Protein kinase domain containing protein;
n=2; Tetrahymena thermophila SB210|Rep: Protein kinase
domain containing protein - Tetrahymena thermophila SB210
Length = 1901
Score = 36.7 bits (81), Expect = 0.73
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 139 GFRKILKTTQKSLP---LKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCID 195
G + I K+ +K LK+N + +L L +S W+ I NL + SK++ D
Sbjct: 1729 GVKSIAKSLEKLKDINLLKLNLCSN-RLEDLAVKSLGISIGKWQNIVNLNINLSKNSITD 1787
Query: 196 DEKSKKENDLNQQKCTNLKKGRKN-KNDLTTQDQSLSIQNKSTKK 239
D + +N Q C N+ K N K L TQ Q+L I KS +K
Sbjct: 1788 D--GVQNLLVNLQNCKNIFKLSLNIKKTLQTQ-QALEIIGKSLEK 1829
>UniRef50_O77339 Cluster: Putative uncharacterized protein MAL3P4.3;
n=2; Eukaryota|Rep: Putative uncharacterized protein
MAL3P4.3 - Plasmodium falciparum (isolate 3D7)
Length = 784
Score = 36.7 bits (81), Expect = 0.73
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 121 NDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEE 180
ND +L + LLC+DS+ +K K K + +K+ T+ ++ P+ +N E
Sbjct: 626 NDHSRILTTLLLCLDSIDTIKKENKKNTK-IKIKIKTNINERHKPKYNPQ-----QNKEH 679
Query: 181 IDNLCASFSKDTCID-DEKSKKENDLNQQKCTNLKKGRKNKNDLTTQD 227
I NL + D EKS + DL + K +K N L T D
Sbjct: 680 ISNLSIESDHYSSSDFSEKSSHDTDLFKNSTKQKNKTKKTSNCLITYD 727
>UniRef50_A2FU34 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1504
Score = 36.7 bits (81), Expect = 0.73
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 145 KTTQKSLPLKM----NTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSK 200
+TT+KS L+ N KD+ ++L + + EN + +NL ++T + + K
Sbjct: 914 ETTEKSTLLEQYKNDNKKKDEIINQLKDKKKKIKQENEQNKNNLQKVTVENTSLQKDLQK 973
Query: 201 KENDLNQQKCTNLKKGRKNKNDLTTQDQSL 230
+NDL Q+ +L+K + + LTT++ +L
Sbjct: 974 SQNDL-QKSQNDLQKSQNDLQKLTTENVNL 1002
Score = 33.1 bits (72), Expect = 9.0
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
Query: 142 KILKTTQKSLPLKMNTSKD-----DSASELLWPELDVSTENWEEIDNLCASFSKDTCIDD 196
K LK+ +L K+N ++ D ++LL EL + +N +EI L K
Sbjct: 1138 KALKSNLTNLQNKINEIQNALTGKDKENQLLQNEL--ANKN-KEIQKLKDDLEK---AKS 1191
Query: 197 EKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKR 250
+K+K +N++ + + L+K K DL Q+ +L + + K L G+ K+
Sbjct: 1192 DKNKSQNEITDKLNSKLEKVMAEKEDLLKQNANLQAEMQKLKAENEKLKGILKK 1245
>UniRef50_P38978 Cluster: KS1 protein precursor; n=4; Hydra|Rep: KS1
protein precursor - Hydra attenuata (Hydra) (Hydra
vulgaris)
Length = 217
Score = 36.7 bits (81), Expect = 0.73
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVSTENWE-EIDNLCASFSKDTCID-DEKSKKE 202
K ++ K+ DD E E + E+ E E+D D C D D+K KKE
Sbjct: 98 KKKKRETKPKLKKRNDDEEEE----ECEEDDEDCEVEVDIEECDEEDDDCYDEDKKKKKE 153
Query: 203 NDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDA 256
N L ++ K KN + +S S + S KK++ + K L K+A
Sbjct: 154 NKLKKESKKKNSKKTVPKNAKKSSKRSTSTKKTSQKKQQDKRGAIQKNLKIKEA 207
>UniRef50_Q600A7 Cluster: DNA polymerase III, alpha chain; n=4;
Mycoplasma hyopneumoniae|Rep: DNA polymerase III, alpha
chain - Mycoplasma hyopneumoniae (strain 232)
Length = 1469
Score = 36.3 bits (80), Expect = 0.96
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V FD+ETTGL +I E F AV +Q+G+ I+K F + P KI P +
Sbjct: 411 FVIFDLETTGL---SAFYNEIVE--FGAVV-----LQNGI-EIEKHQFFIKPTGKIPPAI 459
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+TG++ + + + A + + ++ K LVAHN +FD+ L
Sbjct: 460 TKITGISQKMIDETAISWEIA---LEKITKIIKDSVLVAHNA-AFDFSFL 505
>UniRef50_Q03WE5 Cluster: Rad3-related DNA helicase; n=1;
Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293|Rep: Rad3-related DNA helicase - Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293
/NCDO 523)
Length = 797
Score = 36.3 bits (80), Expect = 0.96
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 42 IQSGLPPIKKLSFV------LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLN 95
IQ G+ IKK V +NP + I + LT ++ + ++NAP F++ I L
Sbjct: 26 IQIGMTFIKKRQIVDHFESFVNPGQLIDRQIQQLTHISQKDVQNAPYFEE----IAPLLQ 81
Query: 96 ELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
L + ++AHN N FDY L E G L
Sbjct: 82 NLLQNTVIIAHNVN-FDYPYLNDEFERTGFPL 112
>UniRef50_Q03FN6 Cluster: Rad3-related DNA helicase; n=1;
Pediococcus pentosaceus ATCC 25745|Rep: Rad3-related DNA
helicase - Pediococcus pentosaceus (strain ATCC 25745 /
183-1w)
Length = 929
Score = 36.3 bits (80), Expect = 0.96
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T Y D+E TG F N+ F +++G + +NP++ I
Sbjct: 4 TKYAVVDLEMTGSDFDGDNRIIQIGCAF---------VENG-KIVDTFQSKVNPQRPIPA 53
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ LTG+T+E ++NAP F N IV + VAHN FD+ L E +G
Sbjct: 54 GITKLTGITDEQVQNAPKF----NDIVDEVYRKLVDTVFVAHN-VEFDFPFLNQELVRSG 108
>UniRef50_A5IU60 Cluster: Exonuclease, RNase T and DNA polymerase
III; n=16; Staphylococcus|Rep: Exonuclease, RNase T and
DNA polymerase III - Staphylococcus aureus subsp. aureus
JH9
Length = 184
Score = 36.3 bits (80), Expect = 0.96
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 114
++NP+ + + G+ E ++NAPTF ++ F+ +LP +VAHN +FD
Sbjct: 41 LVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLP----VVAHNA-AFDMN 95
Query: 115 ILLAECNDAGILLPS 129
+L + G+ P+
Sbjct: 96 VLHQSIQNIGLPTPN 110
>UniRef50_Q68BL2 Cluster: DNA helicase RecG; n=1; Nannochloris
bacillaris|Rep: DNA helicase RecG - Nannochloris
bacillaris (Green alga)
Length = 1341
Score = 36.3 bits (80), Expect = 0.96
Identities = 21/54 (38%), Positives = 27/54 (50%)
Query: 223 LTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVILIECVLAL 276
L T S S+ S K F LT LY L K+A+ AHRA D + + + AL
Sbjct: 259 LDTLSASRSLLTGSAKPEAFNLTTLYGHLTRKEAIAAHRASADVKMTVAVLHAL 312
>UniRef50_A2EQG1 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 712
Score = 36.3 bits (80), Expect = 0.96
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVSTE---NWEEIDNLCASFSKD-TCIDDEKSK 200
++T+ S K N K + E E + E N EEI + S K+ +DE K
Sbjct: 125 ESTENSQKDKQNEPKPEEKQETATTESETKVEEKENKEEIASKEESEKKEENQANDETDK 184
Query: 201 KENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFT 243
K+N Q++ N +K +NK D+ + +NKS + E T
Sbjct: 185 KKNKQTQEETENKEKIEENKEDIPPKQ---GTENKSEQPTEST 224
>UniRef50_Q59XT8 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 613
Score = 36.3 bits (80), Expect = 0.96
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 161 DSASELLWPELDVSTE-NWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKN 219
DS +E + P +D+S E N+ + SF++D +DD K N+ N T K
Sbjct: 444 DSITETVDPMIDLSLEVNFTNLYQSLQSFTRDEKLDDYNCKNCNNSNNNMSTTTTSAIK- 502
Query: 220 KNDLTTQDQSLSIQNK 235
K L T Q LSIQ K
Sbjct: 503 KLRLKTLPQILSIQLK 518
>UniRef50_A7EE08 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 686
Score = 36.3 bits (80), Expect = 0.96
Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 21/143 (14%)
Query: 138 IGFRKILKT------TQKSLPL--KMNTSKDDSASELLWPELDVSTENWEEIDNLCASFS 189
+GFR + K T LP+ + D E++ +D+ E WE++ L + F
Sbjct: 290 VGFRAVCKAIRETAFTTSPLPIIVSLEVHADHEQQEIM---VDIMKEEWEDL-LLDSPF- 344
Query: 190 KDTCIDDEKSKK-ENDLNQ-----QKCTNLKKGRKNKNDLTT-QDQSLSIQNKSTKKREF 242
+TC +E+ + E LN+ +K LK ++ N+LT LS N T +++
Sbjct: 345 -ETCNPEERVPRLEELLNKILVKVKKAPELKDASEHLNELTNGSTNGLSPTNTDTLEKKA 403
Query: 243 TLTGLYKRLLDKDAVNAHRAEDD 265
+ L + KDA +AH +D
Sbjct: 404 SSNTLVPVISTKDAESAHSGSED 426
>UniRef50_Q8XJR3 Cluster: DNA polymerase III polC-type; n=9;
Clostridiales|Rep: DNA polymerase III polC-type -
Clostridium perfringens
Length = 1449
Score = 36.3 bits (80), Expect = 0.96
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV FDIETTG F +N KI E+ AV D +I + S ++P+ I +
Sbjct: 435 YVVFDIETTG--FSSKN-DKIIEIG--AVKLKDGEI------VDSFSTFVDPKVNIPYKI 483
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
LT +T + PT + + F+ LVAHN +FD + D G
Sbjct: 484 TELTSITQNMVNGQPTIDEVLPKFMEFVGN----SVLVAHNA-AFDVGFIKKNLMDMGKT 538
Query: 127 LPSDLL 132
L + ++
Sbjct: 539 LKNPVM 544
>UniRef50_P43745 Cluster: DNA polymerase III subunit epsilon; n=40;
Proteobacteria|Rep: DNA polymerase III subunit epsilon -
Haemophilus influenzae
Length = 256
Score = 36.3 bits (80), Expect = 0.96
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+ P++ PD + + G+T+E L + P FK+ A + ++N L+ HN FD
Sbjct: 51 IKPDRPXDPDAIKVHGITDEMLADKPEFKEVAQDFLDYINGAE----LLIHNA-PFDVGF 105
Query: 116 LLAECNDAGILLPSDLLCI 134
+ E + + +D +C+
Sbjct: 106 MDYEFRKLNLNVKTDDICL 124
>UniRef50_Q8CUQ0 Cluster: Hypothetical conserved protein; n=1;
Oceanobacillus iheyensis|Rep: Hypothetical conserved
protein - Oceanobacillus iheyensis
Length = 195
Score = 35.9 bits (79), Expect = 1.3
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 114
++NP V + G+T E ++ APTF + + ++L + L+AHN SFD
Sbjct: 39 LINPLASFRSGNVFIHGITEEQVQEAPTFAELWPTLSAYLED----TILIAHNA-SFDMS 93
Query: 115 ILLAECNDAGILLPS 129
+L N I P+
Sbjct: 94 VLRQSLNKYDIPCPN 108
>UniRef50_Q5GS93 Cluster: DNA polymerase III epsilon subunit; n=4;
Wolbachia|Rep: DNA polymerase III epsilon subunit -
Wolbachia sp. subsp. Brugia malayi (strain TRS)
Length = 231
Score = 35.9 bits (79), Expect = 1.3
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 16/136 (11%)
Query: 8 VFFDIETTGLPFQERNKTKITEL-CFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+ D ETTGL + ++ I E+ C ++R +P K LNPE+ I
Sbjct: 8 IVLDTETTGLDIESGHR--IIEIGCVELINR--------IPTGKVFHKYLNPERDIPYHS 57
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
+ G++ E L++ P F ++ + FL+ + I L+ HN FD K L E
Sbjct: 58 FKIHGISEEFLEDKPLF---SDVVFEFLDFISGDI-LIIHNA-EFDIKFLNMELGKLNAR 112
Query: 127 LPSDLLCIDSLIGFRK 142
L S +D+L RK
Sbjct: 113 LISSDRVLDTLPLARK 128
>UniRef50_Q2S3Z9 Cluster: Exonuclease, putative; n=1; Salinibacter
ruber DSM 13855|Rep: Exonuclease, putative -
Salinibacter ruber (strain DSM 13855)
Length = 249
Score = 35.9 bits (79), Expect = 1.3
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 11/121 (9%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
VFFD+E TG Q +I F+ S D + + + +++P+++I V
Sbjct: 9 VFFDLEATGTDPQAARIIQIGMQRFVP-SGDGAALD------ETIDVLVDPQEEIPAAVT 61
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILL 127
LTGL+ ++++ AP + I L + L +N ++D +L AE G L
Sbjct: 62 DLTGLSPDAVRQAPPLGAHLDRIAPLLADAD----LAGYNALAYDIPLLQAEFERHGRTL 117
Query: 128 P 128
P
Sbjct: 118 P 118
>UniRef50_Q2RJC1 Cluster: DNA polymerase III, epsilon subunit; n=1;
Moorella thermoacetica ATCC 39073|Rep: DNA polymerase
III, epsilon subunit - Moorella thermoacetica (strain
ATCC 39073)
Length = 921
Score = 35.9 bits (79), Expect = 1.3
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
TYV D+ETTGL + + +I E+ + + ++ ++ ++NP + I P
Sbjct: 5 TYVVLDVETTGL---DPARDRIIEIAAVRLEGGNIT--------RQFQTLVNPGRPIPPA 53
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+ LTG+++ ++ AP + ++ L +L + V HNG +FD L
Sbjct: 54 IERLTGISDAMVREAPPLPE----VLPGLLDLFRDAIPVGHNG-TFDLAFL 99
>UniRef50_Q6M3W0 Cluster: DNA polymerase III epsilon subunit or
related 3'-5' exonuclease; n=4; Corynebacterium|Rep: DNA
polymerase III epsilon subunit or related 3'-5'
exonuclease - Corynebacterium glutamicum (Brevibacterium
flavum)
Length = 476
Score = 35.9 bits (79), Expect = 1.3
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 71 GLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGILLPSD 130
G+T E + + P F +V F+ +LP LVAHN FD+ L C +GI +P
Sbjct: 178 GITPEMVADQPRFADLVPKMVEFVGDLP----LVAHNA-QFDFTALSRACAASGIDVPEM 232
Query: 131 LLCIDSLIGFRKILKTTQKSLP 152
+ + + L+ LP
Sbjct: 233 IYGCSLTLARNEKLQVENHKLP 254
>UniRef50_Q057S0 Cluster: DNA polymerase III, e subunit; n=1;
Buchnera aphidicola str. Cc (Cinara cedri)|Rep: DNA
polymerase III, e subunit - Buchnera aphidicola subsp.
Cinara cedri
Length = 231
Score = 35.9 bits (79), Expect = 1.3
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
VF DIETTG+ NK L + ++ + + + + L P++ I
Sbjct: 9 VFLDIETTGM-----NKYGCIYLNHKIIEIGIIETINRKYTGRYIHYYLYPQRSIESSAY 63
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+ G++ L N PTFK I +F+ K ++ HN N FD L
Sbjct: 64 KIHGISESFLSNKPTFKDIYKEIFNFI----KNSEIIVHNSN-FDISFL 107
>UniRef50_A7HNS3 Cluster: DNA polymerase III, alpha subunit; n=1;
Fervidobacterium nodosum Rt17-B1|Rep: DNA polymerase
III, alpha subunit - Fervidobacterium nodosum Rt17-B1
Length = 1390
Score = 35.9 bits (79), Expect = 1.3
Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 19/148 (12%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
TYV D+ETTGL +I E+ AV D + I + + P K++
Sbjct: 382 TYVVLDLETTGL---NPRSDEIMEIG--AVKTRDGKV------IDEFHTFVRP-NKLNKK 429
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
+ +TG+T + LK+AP Q ++ F+ K LVAHN + FD L + +GI
Sbjct: 430 SLNITGITEDMLKDAPDIMQVLPKLLEFI----KDSILVAHNAD-FDMTFLKNILSKSGI 484
Query: 126 LLPSDLLCIDSLIGFRKILKTTQKSLPL 153
ID+L + +L+ KS L
Sbjct: 485 EFNPPY--IDTLRLSQALLRNKIKSFSL 510
>UniRef50_A3V111 Cluster: Exonuclease, DNA polymerase III, epsilon
subunit family; n=1; Loktanella vestfoldensis SKA53|Rep:
Exonuclease, DNA polymerase III, epsilon subunit family
- Loktanella vestfoldensis SKA53
Length = 469
Score = 35.9 bits (79), Expect = 1.3
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Query: 2 VRITTYVFFDIETTG-LPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEK 60
+R TYV FD ETTG LP NK ++ ++ L V + P + L ++NP +
Sbjct: 271 LRDLTYVVFDTETTGFLP----NKDEVVQIGALRV------VNGQQAPGEVLDLLVNPGR 320
Query: 61 KIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHN 107
I + +T+ +K+AP SF + LVAHN
Sbjct: 321 AIPASSTAVHRITDAMVKDAPDMVHAGRKFHSFARD----AVLVAHN 363
>UniRef50_Q8IKG1 Cluster: Putative uncharacterized protein; n=3;
Eukaryota|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 2104
Score = 35.9 bits (79), Expect = 1.3
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKEND 204
KTT K K D S + + ST N E+ C K+T +DEK K ++
Sbjct: 414 KTTFKEKNNLNGNQKKDKISNVDKQKGKTST-NDEKKKVKCDEKMKETSKEDEKQVKSDE 472
Query: 205 LNQQKCTNLKKGRKNKNDLTTQDQSLSIQNK 235
++K K +KN NDL ++++ ++ K
Sbjct: 473 NKRKKRRKPKNKKKNLNDLEKEEKTSQVEEK 503
Score = 34.7 bits (76), Expect = 2.9
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 190 KDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQ-----NKSTKKREFTL 244
K T D EK K ND ++K N + +KN ND T+ S N + KK+
Sbjct: 843 KKTPNDAEKKKNPNDAEKKKNPNDAEKKKNPNDANTKKASNGANKERTPNDAEKKKTSND 902
Query: 245 TGLYKRLLDKD-AVNAHRAEDD 265
K L DK+ VN ++ +DD
Sbjct: 903 AEKKKTLNDKEKTVNFNQKKDD 924
>UniRef50_Q5CVW6 Cluster: Sushi-domain containing secreted protein;
with a signal peptide, low complexity region followed by
a sushi domain; n=2; Cryptosporidium|Rep: Sushi-domain
containing secreted protein; with a signal peptide, low
complexity region followed by a sushi domain -
Cryptosporidium parvum Iowa II
Length = 1006
Score = 35.9 bits (79), Expect = 1.3
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKEND 204
+ + KS + + +KD S+SE+ E D+++E+ + +++ + +EKS +END
Sbjct: 259 ENSNKSSDSEADANKDFSSSEVAQEE-DLASESTDNLNDQTGNSDGAENTSEEKSSEEND 317
Query: 205 LNQQKC-TNLK-----KGRKNKNDLTTQDQSLSIQNKSTKK 239
K TN + K + KN+ + D SLS +K T K
Sbjct: 318 EKSMKTDTNDQSNGDVKNDEVKNEDSKNDTSLSDASKDTSK 358
>UniRef50_Q297P0 Cluster: GA10321-PA; n=1; Drosophila
pseudoobscura|Rep: GA10321-PA - Drosophila pseudoobscura
(Fruit fly)
Length = 1041
Score = 35.9 bits (79), Expect = 1.3
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 149 KSLPLKMNTSKDDSASELLWPELDVSTENWE-EIDNLCASFSKDTCIDDEKSKKENDLNQ 207
K+ LK N DD + L E +++ + E + +N +K +++ K ++ + +
Sbjct: 771 KNPDLKENIKMDDIETRLKIKEENITKDESETQEENKEVKMNKKVKVENIKKEESQNTEE 830
Query: 208 QKCTNLKKGRKNKNDLTTQDQSLSIQN 234
K N+KKG+ +DLT + L I N
Sbjct: 831 TKKENIKKGKNVLSDLTGAMKLLDINN 857
>UniRef50_A2EZT9 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 668
Score = 35.9 bits (79), Expect = 1.3
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 146 TTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDL 205
+TQ S ++ DDS ++L + D S ++ +E D+L + + DDE K++ +
Sbjct: 401 STQSSSDNDDSSDSDDSPNDLRFVS-DSSDDDSDEEDSLSDDYDSSSDDDDEDEKEKESV 459
Query: 206 NQQKCTNLKK 215
N C L K
Sbjct: 460 NMNNCAKLHK 469
>UniRef50_Q92GL1 Cluster: DNA polymerase III subunit epsilon; n=9;
Rickettsia|Rep: DNA polymerase III subunit epsilon -
Rickettsia conorii
Length = 230
Score = 35.9 bits (79), Expect = 1.3
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 17/163 (10%)
Query: 8 VFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVV 67
+ D ETTGL R +I E+ + + L +G + F +NPE+ + +
Sbjct: 7 IILDTETTGL--DPRQGHRIVEIGAIEMVNKVL---TG----RNFHFYINPERDMPFEAY 57
Query: 68 VLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL---LAECNDAG 124
+ G++ E LK+ P F A+ + F+++ L+ HN FD K L L+
Sbjct: 58 RIHGISGEFLKDKPLFHTIADDFLEFISDSK----LIIHNA-PFDIKFLNHELSLLKRTD 112
Query: 125 ILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELL 167
I L ID+L+ R I ++ +L K D++ L
Sbjct: 113 IKLLELANTIDTLVMARSIFPGSKYNLDALCKRFKVDNSGRQL 155
>UniRef50_Q86XK3 Cluster: Uncharacterized protein C10orf78; n=13;
Eutheria|Rep: Uncharacterized protein C10orf78 - Homo
sapiens (Human)
Length = 307
Score = 35.9 bits (79), Expect = 1.3
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 174 STENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQ 233
S EN + AS +++ C++ ++S K D ++ TNLK KN N + QSL
Sbjct: 138 SEENDQTFSEKPASSTEENCLEFQESFKHIDSEFEENTNLKNTLKNLN--VCESQSLDSG 195
Query: 234 NKSTKKREFTLTGLYKRLLDKD 255
+ S + EF L K+ L+ +
Sbjct: 196 SCSALQNEFVSEKLPKQRLNAE 217
>UniRef50_UPI0000510268 Cluster: COG0322: Nuclease subunit of the
excinuclease complex; n=1; Brevibacterium linens
BL2|Rep: COG0322: Nuclease subunit of the excinuclease
complex - Brevibacterium linens BL2
Length = 581
Score = 35.5 bits (78), Expect = 1.7
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK-IHP 64
T+V D+ETTG K++ITE+ + ++ + + ++ PE+ I P
Sbjct: 30 TFVIVDLETTGTT---AGKSEITEIGAVKTRGGEV--------LGEFQSLVKPEESVISP 78
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAEC 120
V LTG+T+ + +AP+ + + + SFL E LVAHN FD + + C
Sbjct: 79 FVARLTGITHAMVDDAPSIR---SVLPSFL-EFCVGAVLVAHNA-PFDIGFIRSAC 129
>UniRef50_UPI0000499A87 Cluster: hypothetical protein 151.t00016;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 151.t00016 - Entamoeba histolytica HM-1:IMSS
Length = 644
Score = 35.5 bits (78), Expect = 1.7
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 143 ILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKE 202
I + QKS+PLK KD + E + V EE+ S++ +DE SK +
Sbjct: 524 IKEVVQKSIPLK----KDITYKEASKRDFVVGEVTKEELT------SENNSKNDELSKCK 573
Query: 203 NDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRL-LDKDAVNAHR 261
D NQ+ TN K N T +S + K KK + + R +D D N
Sbjct: 574 KDTNQKLTTNETKETTVNNSSNTLKRSKKVTKKLNKKSSKKINVSFVRFEMDFDNYNDES 633
Query: 262 AEDDC 266
DC
Sbjct: 634 WLSDC 638
>UniRef50_Q73L66 Cluster: DNA polymerase III domain protein; n=1;
Treponema denticola|Rep: DNA polymerase III domain
protein - Treponema denticola
Length = 217
Score = 35.5 bits (78), Expect = 1.7
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+ FD ETTG E ++ E+ + DI+ I + + +++PEK + P+
Sbjct: 16 FTAFDTETTGT---EAKAERVVEIGCVK-----FDIRG---VIARYNVLIDPEKPMPPEA 64
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ +T+E L P F A + FL+ + + LVAHN SFD + E G
Sbjct: 65 GKVNQITDEMLAGQPKF---AEVLPDFLDFIRNTV-LVAHNA-SFDINFINCELERCG 117
>UniRef50_Q67P96 Cluster: DNA polymerase III alpha subunit; n=1;
Symbiobacterium thermophilum|Rep: DNA polymerase III
alpha subunit - Symbiobacterium thermophilum
Length = 1475
Score = 35.5 bits (78), Expect = 1.7
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 53 SFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFD 112
SFV P K + P+V LT +T + L+ AP + A F+ + +VAHN FD
Sbjct: 490 SFV-RPTKPVPPEVQKLTNITPDMLEGAPEAAEALRAFFQFVGD----AIVVAHNA-QFD 543
Query: 113 YKIL 116
Y L
Sbjct: 544 YSFL 547
>UniRef50_Q60AW7 Cluster: DNA polymerase III, epsilon subunit; n=7;
Gammaproteobacteria|Rep: DNA polymerase III, epsilon
subunit - Methylococcus capsulatus
Length = 267
Score = 35.5 bits (78), Expect = 1.7
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NPE++I + + GLTNE L P F+ A+ ++F++ L+ HN +FD
Sbjct: 43 INPEREIDAGAIEVHGLTNEFLAGMPVFRNIADDFLNFISGAE----LIIHNA-AFDVGF 97
Query: 116 L 116
L
Sbjct: 98 L 98
>UniRef50_Q1FF73 Cluster: DNA polymerase III, epsilon subunit:DNA
polymerase III, alpha subunit, Gram-positive type; n=5;
Clostridiales|Rep: DNA polymerase III, epsilon
subunit:DNA polymerase III, alpha subunit, Gram-positive
type - Clostridium phytofermentans ISDg
Length = 1527
Score = 35.5 bits (78), Expect = 1.7
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
T V FDIETTG K KI E+ + + + + + S +NPE I
Sbjct: 496 TCVVFDIETTGF---SSVKDKIIEIGAVKIQHGTI--------VDRFSTFINPEVPIPYH 544
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
+ LT +T+E + + T ++ +SF + LVAHN SFD + + I
Sbjct: 545 IQKLTSITDEMVIGSRTIEEILPEFLSFC----EGCYLVAHNA-SFDIGFITKKAEFLNI 599
Query: 126 LLPSDLLCIDSLIGFRKIL 144
P + +D+ +G ++L
Sbjct: 600 --PLTVTSVDT-VGLARVL 615
>UniRef50_Q8I3H0 Cluster: Putative uncharacterized protein PFE1485w;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFE1485w - Plasmodium falciparum
(isolate 3D7)
Length = 1906
Score = 35.5 bits (78), Expect = 1.7
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 190 KDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE-FTLTGLY 248
KD I+ K K EN N+ N+K N++ ++Q+L IQN S + L
Sbjct: 828 KDEAIETYKCKLENINNEYSNINIK-----YNEILKENQNLHIQNSSNNANSTLIIQQLQ 882
Query: 249 KRLLDKDAVNAH--RAEDDCVILIECVLALRDEFLTWADESCKTIHQIKPLIRY 300
+ + + N H + E+D I+++ + D + E K++ +IK L Y
Sbjct: 883 QEIEILNITNNHLKKIEEDYKIILQEKTIIEDAAIKIQSELKKSVEKIKNLEIY 936
>UniRef50_Q23FG9 Cluster: Cation channel family protein; n=1;
Tetrahymena thermophila SB210|Rep: Cation channel family
protein - Tetrahymena thermophila SB210
Length = 3301
Score = 35.5 bits (78), Expect = 1.7
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 199 SKKENDLNQQKCTNLKKGRKNKNDLTTQD-QSLSIQNKSTKKREFTLTGLYKR 250
S++E +LN ++ N ++ + NK D+ + + S+Q+ S KK EF L + R
Sbjct: 3050 SEEEEELNNEEIQNNEEDQNNKQDINNGEIEKQSVQSASRKKSEFGLRDKFSR 3102
>UniRef50_Q22AT3 Cluster: Viral A-type inclusion protein repeat
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Viral A-type inclusion protein repeat
containing protein - Tetrahymena thermophila SB210
Length = 3812
Score = 35.5 bits (78), Expect = 1.7
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 155 MNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQK--CTN 212
+NT + E +EN E+I+ L A F ++EK++ EN + QQK N
Sbjct: 2163 LNTENNQLKEEFSLKLNAYKSENIEQINQLTAVF------ENEKTQLENAIKQQKEINQN 2216
Query: 213 LKKG--RKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDD 265
L+ +N+N + Q ++ IQ++S +K++ T L K+ D+ +N +D
Sbjct: 2217 LENQVVNQNQNIIKMQQENQLIQSESIEKQKREFTELLKQ-QDEKLLNLRNQFED 2270
>UniRef50_A2EPG1 Cluster: Viral A-type inclusion protein, putative;
n=1; Trichomonas vaginalis G3|Rep: Viral A-type
inclusion protein, putative - Trichomonas vaginalis G3
Length = 1297
Score = 35.5 bits (78), Expect = 1.7
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 149 KSLPLKMNTSKD--DSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLN 206
+SL +++N K D+A+E + + + EID LCA +KD ++E EN+
Sbjct: 757 ESLKIEINHYKQEKDNANESAKAQENKIEKLCSEIDQLCAK-NKDILAENESLSNENEEL 815
Query: 207 QQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTK 238
+ K +N K +N+ + +++ +++ ++++
Sbjct: 816 KSKLSNFKDQTQNEKNSELEEKISALEKENSE 847
>UniRef50_A2E8Z5 Cluster: Viral A-type inclusion protein, putative;
n=1; Trichomonas vaginalis G3|Rep: Viral A-type inclusion
protein, putative - Trichomonas vaginalis G3
Length = 4057
Score = 35.5 bits (78), Expect = 1.7
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 141 RKILKTTQKSLPLKMNTSKD--DSASELLWPELDVSTENWEEIDNLCASFSK------DT 192
+K+ T QK ++MNT KD + E + D+ + ++++ FSK D
Sbjct: 2960 KKLSNTLQKG-DIEMNTLKDLLQTKEEKIRNYEDILEKTKTQMEDKNYEFSKTVKDQNDK 3018
Query: 193 CIDDEKSKKENDLNQQKCTNLKKGRKN-KNDLTTQDQSLSIQNKSTKKREFTLTGL 247
EK ++ DL TN K + KND + QSL+ +NK+ KK TL G+
Sbjct: 3019 INQLEKELEQRDLELDDLTNKSKSFDDEKND---KIQSLTTENKNLKKENRTLKGI 3071
>UniRef50_Q6BVF0 Cluster: Similar to CA1986|IPF14899 Candida
albicans; n=1; Debaryomyces hansenii|Rep: Similar to
CA1986|IPF14899 Candida albicans - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 1254
Score = 35.5 bits (78), Expect = 1.7
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 156 NTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDE--KSKKENDLNQQKCTNL 213
+T KDD A E+ + D ST+ +++ ++ A +K D++ KS K++D++ + +
Sbjct: 537 STIKDDKAGEIKSKD-DDSTKTVDDLSSVAADGAKSNANDNQIKKSDKKDDVDVKGIEQI 595
Query: 214 KKGRKNKNDLTTQDQSLS 231
+ K+K+ + + QSL+
Sbjct: 596 ESSLKSKDPILDRAQSLT 613
Score = 34.7 bits (76), Expect = 2.9
Identities = 27/135 (20%), Positives = 60/135 (44%), Gaps = 4/135 (2%)
Query: 147 TQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSK---KEN 203
T KS+ ++ +KD E++ P+ + +E + + S D+ ++ SK E+
Sbjct: 735 TSKSINVETKDTKDKIVDEVVAPDTKNKNADAKETGQVKSDQSNDSTVEKINSKSIISES 794
Query: 204 DLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAE 263
D K T++ + +T ++ I++ + +KRE + + +++ V+ +
Sbjct: 795 D-ESDKSTDVHASLGDATKVTEIEKEKDIEDSTVEKREPNIDSARGKKEEEEKVSKKDVD 853
Query: 264 DDCVILIECVLALRD 278
D + IE L D
Sbjct: 854 DKAIEQIESGLKASD 868
>UniRef50_Q6LYU6 Cluster: Exonuclease; n=4; Methanococcus|Rep:
Exonuclease - Methanococcus maripaludis
Length = 191
Score = 35.5 bits (78), Expect = 1.7
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YVF D ETTGL + +I +L +L V+ +DL+++ + + K+H
Sbjct: 2 YVFLDTETTGL-----HPGQIAQLSYL-VTDEDLNLKKVFNQYYSVDHMSRSAAKVHG-- 53
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG-I 125
LT + L N TF+ + + L + ++ HN SFD + L AE G
Sbjct: 54 --LTVEILDELSNGMTFEDTVDEVRDDLED----SVIIGHN-ISFDIRFLKAEFERLGPE 106
Query: 126 LLPSDLLC 133
+P D C
Sbjct: 107 YVPKDKFC 114
>UniRef50_P08799 Cluster: Myosin-2 heavy chain, non muscle; n=5;
Dictyostelium discoideum|Rep: Myosin-2 heavy chain, non
muscle - Dictyostelium discoideum (Slime mold)
Length = 2116
Score = 35.5 bits (78), Expect = 1.7
Identities = 30/131 (22%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 105 AHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSAS 164
A N + K L+AE ++ L ++L D L+ ++ L+ + + ++ ++DS S
Sbjct: 1665 ALNASEKKIKSLVAEVDEVKEQLEDEILAKDKLVKAKRALEVELEEVRDQLE-EEEDSRS 1723
Query: 165 ELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLT 224
EL + ++TE + A ++T +D+ K K +D++ K L+ +K N+
Sbjct: 1724 ELEDSKRRLTTEVEDIKKKYDAEVEQNTKLDEAKKKLTDDVDTLK-KQLEDEKKKLNESE 1782
Query: 225 TQDQSLSIQNK 235
+ L +N+
Sbjct: 1783 RAKKRLESENE 1793
>UniRef50_UPI00015B4173 Cluster: PREDICTED: similar to conserved
hypothetical protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to conserved hypothetical protein -
Nasonia vitripennis
Length = 894
Score = 35.1 bits (77), Expect = 2.2
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 13/186 (6%)
Query: 84 KQRANAIVSFLNELPKPI--CLVAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGFR 141
+Q + ++ LN++PK I C ++GN Y L+ + +L P D S +
Sbjct: 711 QQAVSIYINLLNDVPKAIQYCNNVYDGNEEVYVTLIRQ-----LLRPDDREGCASELMLM 765
Query: 142 KILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKK 201
TTQ++ + T A ELL E E + +D L S ++
Sbjct: 766 DPSSTTQRTAQPDLET-----ALELL-EEHAAKIEPQKALDVLPDSVPIGRIRHFLEASL 819
Query: 202 ENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHR 261
+N++N+++ + KG L Q+Q + +++S EF + + K+ + A
Sbjct: 820 QNNINEKRRMQVLKGLLYAEHLQVQEQRMHYESQSVLMTEFNICPVCKKRFGNQSAFARY 879
Query: 262 AEDDCV 267
D V
Sbjct: 880 PNGDIV 885
>UniRef50_UPI00006CD2EC Cluster: hypothetical protein
TTHERM_00268200; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00268200 - Tetrahymena
thermophila SB210
Length = 1015
Score = 35.1 bits (77), Expect = 2.2
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 7/153 (4%)
Query: 111 FDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS-KDDSASELLWP 169
F YKILL+ N I+L + ++ ++L+ T LP K+ S K + E+
Sbjct: 103 FKYKILLSFNNKVIIILSLSTIITQYMLAQAQVLEYTITKLPFKVYLSGKQTNKIEISPN 162
Query: 170 ELDVSTENWEE--IDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKN----DL 223
+ S ++ E + + + + C D + E+ Q + + R+ K+ DL
Sbjct: 163 QHAGSFDDMSEFSMKQIIEEYGDEVCGDIQSINSEDSPQQNQNSKFFDEREEKDQIDEDL 222
Query: 224 TTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDA 256
+ + S SIQN S + + L ++K A
Sbjct: 223 SEFNLSKSIQNSSQQSQIQQQVSLDSSSIEKSA 255
>UniRef50_UPI00006CBD20 Cluster: hypothetical protein TTHERM_00151170;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00151170 - Tetrahymena thermophila SB210
Length = 2579
Score = 35.1 bits (77), Expect = 2.2
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 183 NLCASFSKDTCIDDEKSKKEN-----DLN-QQKCTNLKKGRKNKNDLTTQDQSLSIQNKS 236
NL A+ +D+E K +N LN QQK N + ++NKN L+ DQ+ IQN
Sbjct: 1709 NLIANKIGIAAVDNEDKKSQNLNEGDQLNEQQKLQNENENKQNKNQLSQNDQNGQIQNNK 1768
Query: 237 TKKRE 241
+ E
Sbjct: 1769 SNGDE 1773
>UniRef50_Q7VQB5 Cluster: DNA polymerase III epsilon subunit; n=5;
Gammaproteobacteria|Rep: DNA polymerase III epsilon
subunit - Blochmannia floridanus
Length = 258
Score = 35.1 bits (77), Expect = 2.2
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 13/148 (8%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV D ETTG+ NK + + ++I + + LNP + + +
Sbjct: 8 YVVLDTETTGM-----NKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPNRSVDSEA 62
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI- 125
+ G++++ L + P F AN + F+ + LV HN SFD L E ++ +
Sbjct: 63 FAIHGISDQFLVDQPCFLDIANDFLQFI----RGSTLVIHNA-SFDLGFLNFELHNIYLN 117
Query: 126 --LLPSDLLCIDSLIGFRKILKTTQKSL 151
+ S IDSL RKI + SL
Sbjct: 118 SRTVESYCTVIDSLKLARKIFPGQRNSL 145
>UniRef50_A7A5A0 Cluster: Putative uncharacterized protein; n=1;
Bifidobacterium adolescentis L2-32|Rep: Putative
uncharacterized protein - Bifidobacterium adolescentis
L2-32
Length = 261
Score = 35.1 bits (77), Expect = 2.2
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
YV DIETTGL R I EL + I+ G + S ++NP+ I V
Sbjct: 99 YVAVDIETTGLGRDAR----IIEL-------GAVRIRHGRK-VASYSQLVNPQIPIPAKV 146
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
+TG+T+ ++K PT + +F + HN FD ++ E G
Sbjct: 147 TQITGITDRNVKGKPTIDKALPKFYAFCGR----DTWIGHNIRRFDIPVIAREAQRVGAG 202
Query: 127 LP 128
+P
Sbjct: 203 MP 204
>UniRef50_A6DE82 Cluster: Exonuclease SbcC; n=1; Caminibacter
mediatlanticus TB-2|Rep: Exonuclease SbcC - Caminibacter
mediatlanticus TB-2
Length = 665
Score = 35.1 bits (77), Expect = 2.2
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 176 ENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLK-KGRKNKNDLTTQDQSLSIQN 234
E + +D L T I++EK+KKE DL+Q+K N K K K D Q++SL +N
Sbjct: 13 EKEDILDKLSEFKILKTEIEEEKTKKEKDLSQKKKLNEKIKKLKKLEDEHKQEKSLKNKN 72
Query: 235 KSTKK 239
+ K
Sbjct: 73 QEEIK 77
>UniRef50_A6DDM5 Cluster: DNA polymerase III, epsilon chain; n=1;
Caminibacter mediatlanticus TB-2|Rep: DNA polymerase
III, epsilon chain - Caminibacter mediatlanticus TB-2
Length = 274
Score = 35.1 bits (77), Expect = 2.2
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 50 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGN 109
K++ +LNP+ KI + + + E L++ PTF+++ I+ N + +V HN
Sbjct: 134 KEIYELLNPKAKISEEAYEVHKIKQEDLEDKPTFEEKKEYILDLFNSVD---MIVGHN-V 189
Query: 110 SFDYKILLAECNDA 123
FD+ +L E A
Sbjct: 190 FFDFGVLKRELERA 203
>UniRef50_A5TTA5 Cluster: DNA-directed DNA polymerase III alpha
subunit; n=4; Fusobacterium nucleatum|Rep: DNA-directed
DNA polymerase III alpha subunit - Fusobacterium
nucleatum subsp. polymorphum ATCC 10953
Length = 1454
Score = 35.1 bits (77), Expect = 2.2
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+V FDIETTGL + +I E+ + + + + + S ++NP + I +
Sbjct: 427 FVVFDIETTGL---NSHTNEIIEIGAVKIKAGRI--------VDRYSQLINPGRPIPYHI 475
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHN 107
+T +T+E + N P + + F+ + LVAHN
Sbjct: 476 TEITSITDEQVANEPKIDEVIGKFIDFVGD----AVLVAHN 512
>UniRef50_A5MUE3 Cluster: Putative uncharacterized protein; n=1;
Streptococcus pneumoniae SP23-BS72|Rep: Putative
uncharacterized protein - Streptococcus pneumoniae
SP23-BS72
Length = 308
Score = 35.1 bits (77), Expect = 2.2
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFD 112
++NPE+K + + + E + APTF + I++F++ LP +VAHN FD
Sbjct: 40 LINPEEKFSSRNIKIHAIKPEDVIGAPTFPEVQKEIINFIDNLP----IVAHNAR-FD 92
>UniRef50_Q7RPF9 Cluster: Homeobox-containing protein; n=2;
Plasmodium (Vinckeia)|Rep: Homeobox-containing protein -
Plasmodium yoelii yoelii
Length = 548
Score = 35.1 bits (77), Expect = 2.2
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 189 SKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKK 239
S D CI K K E + N+ K LKK KN+L Q+ N S +K
Sbjct: 13 SDDDCIKKSKKKNELNKNELKKNELKKNELKKNELGNNKQTPHSTNGSVQK 63
>UniRef50_Q7PDQ2 Cluster: MRNA capping enzyme, beta chain, putative;
n=5; Plasmodium (Vinckeia)|Rep: MRNA capping enzyme,
beta chain, putative - Plasmodium yoelii yoelii
Length = 613
Score = 35.1 bits (77), Expect = 2.2
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 1/103 (0%)
Query: 147 TQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLN 206
TQ NT+ +D+ E P L+ +N D + S + ID+ + KK+N+ N
Sbjct: 105 TQSCTTNNNNTNLNDNNKEGNIPNLNNPNKNVNRNDTSAIANSTNNVIDEHEQKKKNNNN 164
Query: 207 QQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYK 249
N N D + + K EF YK
Sbjct: 165 NNSDNNNNSNSNNNGDNNNNSNNF-LNEKENSIYEFVALKSYK 206
>UniRef50_Q4UHS6 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 602
Score = 35.1 bits (77), Expect = 2.2
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKEND 204
+T KS K NT DD S++ E + S E+ ++ + KD +DE + E++
Sbjct: 513 QTASKSEEAKENTESDDKTSKVESSEPNESEEHEDQNEEN----EKDEYEEDESEQNEDE 568
Query: 205 LNQQKCTNLKKGRKNKND 222
++ K T + NKN+
Sbjct: 569 ESESKSTTKSSQKDNKNE 586
Score = 33.1 bits (72), Expect = 9.0
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 196 DEKSKKENDLNQQKCTNLKKGRKN----KNDLTTQDQSLSIQNKSTKKREFTLTGLYKRL 251
+E ++NDLN+QK L+ +KN K DLTT +SL + +S + L K L
Sbjct: 305 EELENQQNDLNKQK-NELESEKKNLDKEKEDLTTGQKSLDTEKESLDNEKKDLEQQQKSL 363
Query: 252 LDKDA 256
D+ +
Sbjct: 364 DDQQS 368
>UniRef50_O97291 Cluster: Putative uncharacterized protein MAL3P7.21;
n=4; Plasmodium|Rep: Putative uncharacterized protein
MAL3P7.21 - Plasmodium falciparum (isolate 3D7)
Length = 1946
Score = 35.1 bits (77), Expect = 2.2
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 179 EEIDNLCASF-----SKDTCIDDEKSKKENDLNQQKCTNLKKGRK-NKNDLTTQDQSLSI 232
+EI+N+ SF +K + +EK K+ N + Q+KC L++ NKN++ ++ L
Sbjct: 1839 KEIENIKESFCNEYENKIKTLVEEKDKEINTV-QKKCKELRQDNTTNKNEIVKLNKMLEE 1897
Query: 233 QNKSTKKREFTL 244
NK KKR+ +
Sbjct: 1898 TNKKIKKRDMEM 1909
>UniRef50_A7RQV9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 207
Score = 35.1 bits (77), Expect = 2.2
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 171 LDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSL 230
L+V ++ +++N ++TC DD KE D N+Q CT + + + ++ + S
Sbjct: 105 LNVGRQSNSKVENCVCRTKRNTCQDDLHPDKEKDGNEQCCTRI----DSNDSISQKTMSD 160
Query: 231 SIQNKSTKKREFTLTGLYKRLL 252
+ N T+ R L+ L K +L
Sbjct: 161 DVSNLCTEIRNIWLS-LIKSIL 181
>UniRef50_P18037 Cluster: Minor outer capsid protein; n=94;
Rotavirus|Rep: Minor outer capsid protein - Human
rotavirus A (strain RV-5) (HuRV-A)
Length = 200
Score = 35.1 bits (77), Expect = 2.2
Identities = 37/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 104 VAHNGNSFDYKILLAECNDAGILLPSDLLCIDSLIGF--RKILKTTQKSLPLKMNTSKDD 161
++ + +F+ +L D G PSD D L F R T + M++S
Sbjct: 41 ISPDAEAFNKYMLSKSPEDIG---PSDSASNDPLTSFSIRSNAVKTNADAGVSMDSSAQS 97
Query: 162 S-ASELLWPELDVSTENWEEID-NLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKN 219
+S++ + ++D S +ID + +S S T EKSK+EN +KC + +
Sbjct: 98 RPSSDIGYDQMDFSLNKGIKIDATVDSSISISTTSQKEKSKQENKNKYKKCYPKIEAESD 157
Query: 220 KNDLTTQDQSL---SIQNKSTKKREFTL 244
+D D +N KK+ F L
Sbjct: 158 SDDYILDDSDSDDGKCKNCKYKKKYFAL 185
>UniRef50_Q86VP1 Cluster: Tax1-binding protein 1; n=64;
Tetrapoda|Rep: Tax1-binding protein 1 - Homo sapiens
(Human)
Length = 789
Score = 35.1 bits (77), Expect = 2.2
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 166 LLWPELDVSTENWEEIDNLCASFSKDTC-IDDEKSKKENDLNQQK--CTNLKKGRKNKND 222
LL +++ + + EE+ L A K+T + ++ + E +LN +K C L+ +K +
Sbjct: 149 LLELKIEKTMKEKEELLKLIAVLEKETAQLREQVGRMERELNHEKERCDQLQAEQKGLTE 208
Query: 223 LTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVN-AHRA 262
+T QSL ++N+ KKR F+ L++D V+ H+A
Sbjct: 209 VT---QSLKMENEEFKKR-FSDATSKAHQLEEDIVSVTHKA 245
>UniRef50_UPI00015B42FE Cluster: PREDICTED: hypothetical protein;
n=1; Nasonia vitripennis|Rep: PREDICTED: hypothetical
protein - Nasonia vitripennis
Length = 283
Score = 34.7 bits (76), Expect = 2.9
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Query: 171 LDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSL 230
L + NW+ L S +T D + K++ +K T K K + Q Q+
Sbjct: 41 LRIPGSNWQMFKTLVTETSNETNPSDIQVKRKK--RNRKRTQSSKEPAPKQQIQVQQQAA 98
Query: 231 SIQNKSTKKREFTLTGLYKRL-LDKDAVNAHRAEDDCVILIECV 273
+ K +K+E + TGL K + +D + V D V + V
Sbjct: 99 KTETKENEKKEESNTGLTKVVAMDCEMVGIGDGTDSMVARVSIV 142
>UniRef50_UPI0000F1DE53 Cluster: PREDICTED: hypothetical protein;
n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 389
Score = 34.7 bits (76), Expect = 2.9
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 189 SKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTK 238
S+D I+D + K+ D Q + T LK+ + N++ +DQ L KSTK
Sbjct: 8 SEDLKIEDTFTIKQEDPGQTELTMLKEETQELNEMEEKDQDLKTVEKSTK 57
>UniRef50_UPI00006CB9F1 Cluster: hypothetical protein TTHERM_00557890;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00557890 - Tetrahymena thermophila SB210
Length = 1270
Score = 34.7 bits (76), Expect = 2.9
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 148 QKSLPLKMNTSKDD-SASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKS---KKEN 203
Q+++ L +N SK D ++ E L E+ E+ + I N + T + +KS K+E+
Sbjct: 1173 QQNIELTINNSKGDINSHEQLSKEIKQVQESNQIIKNKINQLN--TVLLSKKSLAAKQED 1230
Query: 204 DLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKR 240
++N+Q +L++ +DL Q+Q L Q K K +
Sbjct: 1231 EINKQLKDSLQESIMQMSDLNMQEQDLIQQRKELKNQ 1267
>UniRef50_UPI00004D7430 Cluster: Serologically defined colon cancer
antigen 8 (Centrosomal colon cancer autoantigen protein)
(hCCCAP) (Antigen NY-CO-8).; n=3; Xenopus
tropicalis|Rep: Serologically defined colon cancer
antigen 8 (Centrosomal colon cancer autoantigen protein)
(hCCCAP) (Antigen NY-CO-8). - Xenopus tropicalis
Length = 626
Score = 34.7 bits (76), Expect = 2.9
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 153 LKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKEN-----DLNQ 207
L M TS ++AS L V+ E E + L + +EK+ K LNQ
Sbjct: 318 LTMITSLSENASTLESQLKRVTREKNELVREL-EEIQQKLAFQEEKTAKVCAEMCFQLNQ 376
Query: 208 QKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCV 267
K + +++K + L I+NK +K E L K+ L++ ++A RA+D+C+
Sbjct: 377 IKMKKEEAEKEHKEYRIKNLKDLDIKNKEIEKHELQLNK-NKQWLEQAQLDATRAKDECL 435
Query: 268 ILIE 271
L E
Sbjct: 436 RLTE 439
>UniRef50_UPI0000ECA393 Cluster: Novel protein.; n=3; Gallus
gallus|Rep: Novel protein. - Gallus gallus
Length = 661
Score = 34.7 bits (76), Expect = 2.9
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 144 LKTTQKSLPLKMNTSKDDSASELLWPE----LDVSTENWEEIDNLCASFSKDTCIDDEKS 199
L+ ++L L+ T D S SE + + L + + NLC+S ++ + EK+
Sbjct: 152 LRARVQTLDLERKTFLDLSLSEERFQQQEERLQQLRHDLRRVQNLCSSAERELRYEREKN 211
Query: 200 ---KKENDLNQQKCT----NLKKGRKNKNDLTTQDQSLSIQ-NKSTKK 239
+K+N L QQ+CT LK+ R D T SLS Q KS +K
Sbjct: 212 IDLQKQNLLLQQECTKVKAELKQARTKLLDSTETCSSLSAQWEKSQQK 259
>UniRef50_Q5ZLQ8 Cluster: Putative uncharacterized protein; n=2;
Gallus gallus|Rep: Putative uncharacterized protein -
Gallus gallus (Chicken)
Length = 1087
Score = 34.7 bits (76), Expect = 2.9
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 90 IVSFLNELPKPICLVAHNGNSFDYKILLAECN-DAGILLPSDLLCIDSLIGFRKILKTTQ 148
I FL+ELPKP+ A N F++K +L A + L S +C+DSL+G + Q
Sbjct: 747 ICKFLSELPKPLSTYA---NYFEWKSVLPPIQARAELHLGSLSVCVDSLVGEGAFAQVYQ 803
Query: 149 KSLPLKMNTSKDDSASELLWPELDVSTENWE 179
S+ +N S S ++++ ++ WE
Sbjct: 804 ASV---LNASDPRSNQKVIF-KVQKPANPWE 830
>UniRef50_Q9K6I8 Cluster: BH3741 protein; n=1; Bacillus
halodurans|Rep: BH3741 protein - Bacillus halodurans
Length = 219
Score = 34.7 bits (76), Expect = 2.9
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 11/118 (9%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 61
+R + FD ETTG F ++ E+ AV + L++ +NPE+
Sbjct: 22 IRQLAFTVFDTETTG--FAVGAGDRLIEVA--AVHVEGLEVTDFT-----FQTYVNPERN 72
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
I ++ LTG++ + +KNAP + F+ E V H SFD +L E
Sbjct: 73 IPAEIEELTGISEDKVKNAPASLPAIESFFRFV-EQSGSAAWVGHYA-SFDVTVLKKE 128
>UniRef50_Q6F1H8 Cluster: DNA polymerase III alpha subunit; n=5;
Mollicutes|Rep: DNA polymerase III alpha subunit -
Mesoplasma florum (Acholeplasma florum)
Length = 1493
Score = 34.7 bits (76), Expect = 2.9
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 2 VRITTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKK 61
+R + V FD+ETTGL E N +I E F AV D + ++ K ++ P++
Sbjct: 435 IRESKMVVFDLETTGLS-PEFN--EIIE--FGAVVFDPVTGKT-----TKYDYLFKPKQP 484
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
+ + LT +T E L++ K+ + + EL K LVAHN N FD+ L
Sbjct: 485 LKQFTIDLTNITPEMLED----KKNIDDDFDKIYELIKDSILVAHNAN-FDFNFL 534
>UniRef50_A5IXK4 Cluster: DNA polymerase III alpha subunit; n=1;
Mycoplasma agalactiae|Rep: DNA polymerase III alpha
subunit - Mycoplasma agalactiae
Length = 1459
Score = 34.7 bits (76), Expect = 2.9
Identities = 39/137 (28%), Positives = 57/137 (41%), Gaps = 17/137 (12%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
+YV FDIETTGL K E+ + +DI L + F + P+ KI
Sbjct: 424 SYVSFDIETTGL------SPKFHEI----IEFGAVDINQDLKVGEVTQFFIKPQAKIGAF 473
Query: 66 VVVLTGLTNESL-KNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
LTG+T + L + K I L+ +AHN FD+ L +
Sbjct: 474 TTELTGITQQMLDSEGLSIKDGLQRIYDCLDGK----VAIAHNA-KFDFNFLKEQFRLNN 528
Query: 125 ILLPSDLLCIDSLIGFR 141
+ P ++ ID+LI R
Sbjct: 529 VPFP-NVTVIDTLIASR 544
>UniRef50_A4YW45 Cluster: Putative uncharacterized protein; n=1;
Bradyrhizobium sp. ORS278|Rep: Putative uncharacterized
protein - Bradyrhizobium sp. (strain ORS278)
Length = 827
Score = 34.7 bits (76), Expect = 2.9
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 22 RNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDVVVLTGLTNESLKNAP 81
R + + FL V D + + +L+FV P + P VV+TG E ++N
Sbjct: 16 RASANLNGIDFLEVVDSDAATPADRQRVLRLAFVKAPPPGLTPANVVITG--GERIRNVA 73
Query: 82 TFK--QRANAIVSFLNEL----PKPICLVAHNGNSFDYKIL 116
K NA+V LN P + LV G+SFD K L
Sbjct: 74 ADKVGYEGNAVVIHLNAYGDYSPYRLQLVGATGSSFDPKTL 114
>UniRef50_A4M5M6 Cluster: DNA polymerase III, alpha subunit; n=1;
Petrotoga mobilis SJ95|Rep: DNA polymerase III, alpha
subunit - Petrotoga mobilis SJ95
Length = 1388
Score = 34.7 bits (76), Expect = 2.9
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 16/112 (14%)
Query: 5 TTYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
T +V FD+ETTGL E +I E+ AV ++ I + K ++ P K +
Sbjct: 380 TEFVVFDLETTGL---EPAMNEIIEIG--AVKIKNMKI------VSKFHRLVKPRKPVSN 428
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKIL 116
TG+TN+ L+ ++ +SF+ + LVAHN FDY+ +
Sbjct: 429 FTSNFTGITNQMLEVEKPIEEVLPQFLSFI----EGAVLVAHNA-IFDYRFI 475
>UniRef50_A0K225 Cluster: DNA polymerase III, epsilon subunit; n=3;
Bacteria|Rep: DNA polymerase III, epsilon subunit -
Arthrobacter sp. (strain FB24)
Length = 406
Score = 34.7 bits (76), Expect = 2.9
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 18/146 (12%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
+ D+ETTGL F ++ I E+ + V D + ++NP++ + P
Sbjct: 5 FAVVDVETTGL-FPGNHR--IAEIAVVHVDPDGT-------VSNRWETLVNPQRDLGPQH 54
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
+ G+ + +AP F A+ ++ EL LVAHN + FDY+ + E AG+
Sbjct: 55 I--HGIRAADILHAPVFGDIAHDVM----ELLAGRVLVAHNVH-FDYRFVSHELGRAGLE 107
Query: 127 LPSDLL-CIDSLIGFRKILKTTQKSL 151
LP ++ C+ ++ R+ L +SL
Sbjct: 108 LPFEVHDCLCTMKLARRYLPGAGRSL 133
>UniRef50_Q8IL10 Cluster: Putative uncharacterized protein; n=3;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1191
Score = 34.7 bits (76), Expect = 2.9
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 134 IDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTC 193
++ + F+KIL+T ++++P +NT + +S E D+S EN+ C+S+ +
Sbjct: 233 LEKIYTFKKILRTPKENIPF-INTYEIYISSCDKIKECDLSNENY------CSSYHEK-- 283
Query: 194 IDDEKSKKENDLNQQKCTNLKKGRK---NKNDLTTQDQSLSIQNKSTKKREFT 243
I + K N++N K + +K +K +NDL ++ + + KST +E T
Sbjct: 284 IYNNIHMKYNNINLYKNSKRRKKKKKGDKENDL-LDNKKVKNKEKSTSDKELT 335
>UniRef50_Q8ID14 Cluster: Putative uncharacterized protein
PF13_0361; n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PF13_0361 - Plasmodium
falciparum (isolate 3D7)
Length = 897
Score = 34.7 bits (76), Expect = 2.9
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDK 254
D+EK K E D ++Q+ + KKG+K D Q + + +N TKK + +Y + L
Sbjct: 293 DEEKQKSELDDDEQEIGSNKKGKKKIGDENDQQEEDTDENDLTKKDIEQIKQMYIKDLQS 352
Query: 255 DAV 257
+ V
Sbjct: 353 NKV 355
>UniRef50_Q8IBG1 Cluster: Dynein heavy chain, putative; n=2;
Plasmodium|Rep: Dynein heavy chain, putative - Plasmodium
falciparum (isolate 3D7)
Length = 4971
Score = 34.7 bits (76), Expect = 2.9
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 13/135 (9%)
Query: 114 KILLAECNDAGILLPSDLLCIDSLIGFRK-ILKTTQKSLPLKMNTSKDDSASELLWPELD 172
K LL E ND I ++L+ S +K IL QK + L + ++ +L +++
Sbjct: 4118 KNLLPEYNDEQINALNNLIKHKSFSNLKKCILNNKQKWIELLHSAEPEELVCSIL-NDMN 4176
Query: 173 VSTENWEEIDNLC-----------ASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKN 221
+S E+ ++ D + F KD I +EK ND T N N
Sbjct: 4177 MSEESMDKSDEMLNKNKNLNILNNVEFGKDDDIPEEKRYINNDNTNMDTTTKNNNNMNNN 4236
Query: 222 DLTTQDQSLSIQNKS 236
+ + + +QNK+
Sbjct: 4237 NNMNNNNNYMLQNKN 4251
>UniRef50_Q7RGE8 Cluster: Putative uncharacterized protein PY04399;
n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
protein PY04399 - Plasmodium yoelii yoelii
Length = 623
Score = 34.7 bits (76), Expect = 2.9
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 12/131 (9%)
Query: 117 LAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTE 176
+A+ +D+ LL + ++ + F L K N KD + + E +
Sbjct: 331 MAKPHDSSFLLDNYTSSDENYVSFSNFLPNNNKIFVKNKNKFKDTNLKDNCLLEENDGMA 390
Query: 177 NWEEIDNLCA-----SFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLS 231
+ I NLC SF K+ C ++ K KK K T K +N N + S
Sbjct: 391 IFSHIMNLCKQNKIFSFKKNKCPENWKKKK-------KSTKKKTRLENDNCKFYEIGSEK 443
Query: 232 IQNKSTKKREF 242
I KS KK EF
Sbjct: 444 ISEKSYKKNEF 454
>UniRef50_Q7R852 Cluster: Isoleucyl-tRNA syntehtase-related; n=1;
Plasmodium yoelii yoelii|Rep: Isoleucyl-tRNA
syntehtase-related - Plasmodium yoelii yoelii
Length = 447
Score = 34.7 bits (76), Expect = 2.9
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 189 SKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLY 248
+K +D KKEN L + TNLKK + + T+ +S S + K +++ L+ LY
Sbjct: 193 NKTNLKNDNLLKKENLLKNK--TNLKKENLLQINEYTKSESFSKKKKKKNNKKYILSKLY 250
Query: 249 KRLLDK 254
+L++K
Sbjct: 251 NKLINK 256
>UniRef50_Q54KG0 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 551
Score = 34.7 bits (76), Expect = 2.9
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 58 PEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 117
P+ +IHP + LT+ L +AP + + + ++ P LVAHN +FD +IL+
Sbjct: 341 PKAQIHPVSEQIHQLTSLQLMSAPPIEIILASFMDWVGNSP----LVAHN-LAFDKRILI 395
Query: 118 AECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 151
E I D +C ++ F+KI SL
Sbjct: 396 QELIRYNIPFNIDHICFCTMKYFKKIYNGLNYSL 429
>UniRef50_Q4YLM6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium berghei|Rep: Putative uncharacterized protein
- Plasmodium berghei
Length = 241
Score = 34.7 bits (76), Expect = 2.9
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQN 234
D KSKK ND N T+LKK KN N TT ++ I+N
Sbjct: 172 DGIKSKK-NDGNNNNITDLKKENKNNNSTTTNNKYFFIKN 210
>UniRef50_Q4UDH7 Cluster: Smc protein, putative; n=2; Theileria|Rep:
Smc protein, putative - Theileria annulata
Length = 1348
Score = 34.7 bits (76), Expect = 2.9
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 143 ILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWE------EIDNLCASFSKDTCIDD 196
+LK TQK KMN SK + L L ST + E ++D L ++ + DD
Sbjct: 996 LLKNTQKQKNEKMNESKKLFYNSL--KSLKTSTRSTELYISTMKLDTLSIHSNRCSKTDD 1053
Query: 197 EKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDA 256
+ K+++LN + + L G+ NDL +S + ++ + G+ + KD
Sbjct: 1054 DLVPKDSNLNHSESSEL-NGQTELNDLNRTTESSELNGEAELNGVNGINGISE---GKDL 1109
Query: 257 VNAHRAEDDCVILIECV 273
V + DD LIE V
Sbjct: 1110 VKNEKV-DDIEDLIEDV 1125
>UniRef50_Q23RE0 Cluster: MT-A70 family protein; n=1; Tetrahymena
thermophila SB210|Rep: MT-A70 family protein -
Tetrahymena thermophila SB210
Length = 2070
Score = 34.7 bits (76), Expect = 2.9
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 172 DVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLS 231
D S E EE ++ D+ ++ KS E+ NQ + +K NKN+ ++ +
Sbjct: 1730 DQSEEKKEENNDQLIDKKSDSINNENKSVDESKQNQMEEEEDQKEESNKNEDDKEENEIQ 1789
Query: 232 IQNKSTKKRE 241
+NK KKR+
Sbjct: 1790 EENKVVKKRK 1799
>UniRef50_Q22A56 Cluster: Cation channel family protein; n=2;
Tetrahymena thermophila SB210|Rep: Cation channel family
protein - Tetrahymena thermophila SB210
Length = 2629
Score = 34.7 bits (76), Expect = 2.9
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 142 KILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSK- 200
K+L +QK L ++ + A+ + ++S++ ++ + + D KS
Sbjct: 2384 KLLNQSQKELRYSVDQQIQNIAALMFLHNKNISSQQINNVNYNYSYQQNSSKCDSSKSSI 2443
Query: 201 ---KENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRL 251
KE L +KC L ++N + + QS+ K T E + L K L
Sbjct: 2444 KDLKEQSLISKKCNRLSHNQENSQNNLLKQQSIGKNKKQTSNNELIIDRLSKIL 2497
>UniRef50_A2F0Q2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 716
Score = 34.7 bits (76), Expect = 2.9
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 141 RKILKTTQKSLPLKMNTSKDDSAS-ELLWPELDVSTENWEEIDNLCASFSKDTCIDDEK- 198
+KIL +L + K++ + EL+ + E EEI + + +K +D E
Sbjct: 456 KKILSEENSNLKEERKIMKEELVNYHKALNELNSTKEELEEIKSNLENANKQAELDQESF 515
Query: 199 SKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFT 243
K+EN LN + +L+K KN T SL+IQN + E T
Sbjct: 516 EKRENQLN-EIIQSLEKTDNEKNS-TINSLSLTIQNLQDQVNEST 558
>UniRef50_A2EJ43 Cluster: Viral A-type inclusion protein, putative;
n=1; Trichomonas vaginalis G3|Rep: Viral A-type
inclusion protein, putative - Trichomonas vaginalis G3
Length = 940
Score = 34.7 bits (76), Expect = 2.9
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 144 LKTTQKSLPLKMNTSKD--DSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKK 201
++ QK + + T +D E+ + S +N +EID+L + DEK K+
Sbjct: 357 IEELQKEIGERQKTVEDLKQKIEEINSQNAEESEKNQKEIDDLTQEIEEINQKLDEKQKE 416
Query: 202 ENDLNQQKCTNLKKG----RKNKNDLTTQDQSLSIQNKSTKK 239
+DL ++K NL+K +KN + Q ++L +N KK
Sbjct: 417 NDDLKKEK-ENLQKEVDEIKKNFEENQNQIENLQKENDDLKK 457
>UniRef50_A2E8H6 Cluster: Viral A-type inclusion protein, putative;
n=1; Trichomonas vaginalis G3|Rep: Viral A-type inclusion
protein, putative - Trichomonas vaginalis G3
Length = 2458
Score = 34.7 bits (76), Expect = 2.9
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 144 LKTTQKSLPLKMNTSKDDSASELL-WPELDVSTENWE----EIDNLCASFSKDTCIDDEK 198
LK+ + L K+ +S+ + E W + + TEN E EI+ L ++ + +DEK
Sbjct: 1634 LKSEIEELKKKLESSEQNKEEENNGWGDENTETENIENLKSEIEELNKKLNELSKSNDEK 1693
Query: 199 SKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVN 258
KK +L Q+ L++ + NK++ + L Q + ++ T + + ++
Sbjct: 1694 QKKIEELEQK----LQESQNNKDEEEENIEDLKEQLEQLRRDAITKSKQDQEEIENLKKQ 1749
Query: 259 AHRAEDDCVILIECVLALRDEFLTWADESCKTIHQIK 295
E D + E + LR + +T A + + I +++
Sbjct: 1750 IEEKEADIEEITEELEQLRKDSITKAKQDQEEIEKLQ 1786
>UniRef50_Q2FLJ5 Cluster: Exonuclease; n=1; Methanospirillum
hungatei JF-1|Rep: Exonuclease - Methanospirillum
hungatei (strain JF-1 / DSM 864)
Length = 215
Score = 34.7 bits (76), Expect = 2.9
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHP-D 65
Y+ FD E+TGLP +E++ E V + + G I + ++++ P+ + P
Sbjct: 3 YLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWI-LTDGETIITEENYLIYPDGFVIPSS 61
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGI 125
+ + G+TNE + K + F + + LV HN SFD I+ +E + A +
Sbjct: 62 SMEIHGITNERAREEG--KPVLEVLSVFSESIKQADVLVGHN-VSFDRSIVTSEYSRAKL 118
Query: 126 LLP 128
P
Sbjct: 119 NAP 121
>UniRef50_UPI000150AB94 Cluster: hypothetical protein TTHERM_00755750;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00755750 - Tetrahymena thermophila SB210
Length = 1495
Score = 34.3 bits (75), Expect = 3.9
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 127 LPSDLLCIDSLIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCA 186
L S+ L D++I + ++ ++ L K S ++L+ + + + +EEI+N +
Sbjct: 1257 LKSEQLKQDNVINTENLQQSNKQLLIKNAAEKKFSSINQLVQQKEEDAEIIYEEIENNQS 1316
Query: 187 SFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQ----DQSLSIQNKSTKKRE 241
S S + +K K++ LN+ K N K+ N++ + + DQS+S K T +E
Sbjct: 1317 SISMQSNQVLQKQKQQTQLNENK--NSKESEMNQHSIKEKNLIGDQSVSKYQKQTYVQE 1373
>UniRef50_UPI00006CFADA Cluster: Ubiquitin-conjugating enzyme family
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ubiquitin-conjugating enzyme family protein -
Tetrahymena thermophila SB210
Length = 443
Score = 34.3 bits (75), Expect = 3.9
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 183 NLCASFSKDTCIDDEKS-KKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
N C F + + +++ + +K+ND +QQK K K DL Q+Q +S QNK ++++
Sbjct: 269 NSCQKFRRSSKQNEQSNPQKQNDSDQQKENQKNSDLKQKQDLGNQNQ-MSDQNKEKQQQQ 327
>UniRef50_Q7MAI6 Cluster: DNA POLYMERASE III EPSILON SUBUNIT DNAQ;
n=1; Wolinella succinogenes|Rep: DNA POLYMERASE III
EPSILON SUBUNIT DNAQ - Wolinella succinogenes
Length = 206
Score = 34.3 bits (75), Expect = 3.9
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 60 KKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAE 119
K++ + +TG+T+E LK+AP+ K+ FL + VAHN FDY L A
Sbjct: 57 KEVPEYITKITGITSEELKDAPSMKEVLTRFRLFLGD----AVFVAHNA-LFDYGFLGAM 111
Query: 120 CNDAGI 125
+G+
Sbjct: 112 MKRSGM 117
>UniRef50_Q5SK39 Cluster: DNA polymerase III epsilon chain-like
protein; n=2; Thermus thermophilus|Rep: DNA polymerase
III epsilon chain-like protein - Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579)
Length = 624
Score = 34.3 bits (75), Expect = 3.9
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 18/128 (14%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLA--VSRDDLDIQSGLPPIKKLSFVLNPEKKIHP 64
Y FD+ETTGL ++ + + L V R ++ ++NP + I P
Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVLGRRVLRQEV-----------FEALVNPGRPISP 488
Query: 65 DVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAG 124
+ GLT E L++ P + A +F+ + LVAHNG +FD L D
Sbjct: 489 AATAVHGLTAEMLRDKPPLEAVLPAFRAFVQD----TVLVAHNG-AFDLAFLRRAGLDQP 543
Query: 125 ILLPSDLL 132
LL + LL
Sbjct: 544 PLLDTLLL 551
>UniRef50_Q47RH7 Cluster: DNA polymerase III, epsilon subunit; n=1;
Thermobifida fusca YX|Rep: DNA polymerase III, epsilon
subunit - Thermobifida fusca (strain YX)
Length = 210
Score = 34.3 bits (75), Expect = 3.9
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 58 PEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILL 117
P D + + G+T E + +AP + Q I+ F P VAHN FD ++
Sbjct: 46 PVDHFEQDNIAVHGITPEHVADAPAWPQVHTTILEFAAGSP----FVAHNA-VFDMGVIR 100
Query: 118 AECNDAGILLPS 129
A C AG+ PS
Sbjct: 101 AACAHAGLPEPS 112
>UniRef50_Q3VXD4 Cluster: Exonuclease; n=1; Frankia sp. EAN1pec|Rep:
Exonuclease - Frankia sp. EAN1pec
Length = 389
Score = 34.3 bits (75), Expect = 3.9
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 7 YVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPDV 66
Y D+ETTGL + ++ + + + D ++ + S +L+P P
Sbjct: 77 YAVVDVETTGL---SPTRDRVLSVAVVLTAADGT-VEH------RWSTLLDPG--CDPGP 124
Query: 67 VVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKILLAECNDAGIL 126
V + GLT + L +PTF A+ + L LVAHN +FD+++L E G
Sbjct: 125 VHIHGLTRQRLAGSPTFAAVADEVAGLL----AGRVLVAHNA-AFDWRMLAGEAMRIGTT 179
Query: 127 LP 128
+P
Sbjct: 180 IP 181
>UniRef50_Q3D960 Cluster: DnaQ family exonuclease/DinG family
helicase, putative; n=26; Streptococcus|Rep: DnaQ family
exonuclease/DinG family helicase, putative -
Streptococcus agalactiae COH1
Length = 835
Score = 34.3 bits (75), Expect = 3.9
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 56 LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYKI 115
+NP + + +V LTG+T++ L AP F Q A+ I + + VAHN FD +
Sbjct: 60 VNPHESLDEHIVHLTGITDKQLVKAPDFGQVAHHIYQLIED----CIFVAHN-VKFDANL 114
Query: 116 L 116
L
Sbjct: 115 L 115
>UniRef50_Q0A6Z2 Cluster: Putative PAS/PAC sensor protein precursor;
n=1; Alkalilimnicola ehrlichei MLHE-1|Rep: Putative
PAS/PAC sensor protein precursor - Alkalilimnicola
ehrlichei (strain MLHE-1)
Length = 714
Score = 34.3 bits (75), Expect = 3.9
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDYK 114
++NP + I P V G+T++ +++ P + SF+ + LVAHN +FD K
Sbjct: 549 IINPGRPIPPGSVRFHGITDDDVQDKPPIEVVLPQFKSFVGD----AVLVAHNA-AFDMK 603
Query: 115 ILLAECNDAGILLPSDLL 132
+ + +AG+ + +L
Sbjct: 604 FISMKEREAGVRFDNPVL 621
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,277,028
Number of Sequences: 1657284
Number of extensions: 13952017
Number of successful extensions: 55229
Number of sequences better than 10.0: 348
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 265
Number of HSP's that attempted gapping in prelim test: 54696
Number of HSP's gapped (non-prelim): 686
length of query: 300
length of database: 575,637,011
effective HSP length: 100
effective length of query: 200
effective length of database: 409,908,611
effective search space: 81981722200
effective search space used: 81981722200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 72 (33.1 bits)
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