Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000125-TA|BGIBMGA000125-PA|IPR013520|Exonuclease, RNase
T and DNA polymerase III, IPR006055|Exonuclease,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 30 0.35
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 29 0.62
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.62
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.81
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 29 1.1
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 1.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 28 1.4
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 28 1.4
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.5
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 3.3
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 3.3
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 27 4.3
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual 27 4.3
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 27 4.3
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 26 7.6
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 7.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 7.6
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 7.6
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 26 7.6
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 7.6
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 30.3 bits (65), Expect = 0.35
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 140 FRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKD-TCIDDEK 198
++K+L N +DD E E++V+ + ++DN S KD T I EK
Sbjct: 420 YQKLLSGDADDFQANSNPFEDDDKLEGANGEMEVTFTSGFDVDNNANSSEKDETTI--EK 477
Query: 199 SKKENDLNQQKCTNLKKGRKNKND 222
K++ +Q+ L++ +K K+D
Sbjct: 478 YKRKAAERKQRRKELRQLKKTKDD 501
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 29.5 bits (63), Expect = 0.62
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 146 TTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDL 205
++++++P N++ D++++ L+VS E D + S ++ +KS +
Sbjct: 183 SSKETIPKVSNSNSSDTSTDDQ-AYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVND 241
Query: 206 NQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTK 238
K L K + L+T S + +NKS K
Sbjct: 242 AVSKAIQLVKSTSDLGSLSTNTSSTAQKNKSRK 274
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.62
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 16/105 (15%)
Query: 172 DVSTENWEEIDNLCASFSKDTCIDDEKSKKENDL--NQQKCTNLKK-GRKNK--NDLTTQ 226
D+S +N E +DN S+D+ +DE ++K +L + +K T+ KK G+KNK + +
Sbjct: 20 DISGQN-EYLDNT----SQDSPQNDELAEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSD 74
Query: 227 DQSLSIQNKSTKKREFTLTGL------YKRLLDKDAVNAHRAEDD 265
D+S +++ K +T L YK K + + E+D
Sbjct: 75 DESQELESPQGPKELTAVTELDDDEFDYKPKKGKKGKKSKKVEED 119
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.81
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 172 DVSTENWEEID--NLCASFSKDTCIDDEK----SKKENDLNQQKCTNLKKGRKNKNDLTT 225
D + EN EE NL + SK T ++ S K + L +K LKK +++ LTT
Sbjct: 180 DSNVENKEETKDRNLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLKKRNQDETQLTT 239
Query: 226 QDQSLSIQNKSTKKREFTL 244
++ S N ST K E ++
Sbjct: 240 -EEDFSANNDSTAKIETSI 257
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 197 EKSKKENDLNQQKCTNLKKGRKNK-NDLTTQDQSLSIQNKSTKK 239
EKSKK+ + ++K KK ++ K +D TQ + +++K +KK
Sbjct: 142 EKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKK 185
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 1.4
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 158 SKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGR 217
S+DDS+S+ E + S+E D+ S S D+ D S ++ + N T+ +
Sbjct: 279 SEDDSSSDSSDSESESSSE-----DSDSTSSSSDS--DSSSSSEDGNSNTDTTTSGEVSA 331
Query: 218 KNKNDLTTQDQSLSIQNKSTKK 239
++ + T+ ++S S++++ + K
Sbjct: 332 QSSTNSTSSEESTSVKDEDSSK 353
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 157 TSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKE 202
+SK DS+ + P D+ +E +EID+ + S + +D ++ +K+
Sbjct: 136 SSKTDSSIQAASPNEDLKSEGAQEIDSQSETVSISSDVDYDEDRKD 181
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 28.3 bits (60), Expect = 1.4
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 179 EEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTK 238
E++ N + + + +DD+ EN + + L +KN + ++QSLS+ ++
Sbjct: 1079 EKVINQLSLYIFEMFMDDDLKLSENSEDWGLFSKLCNLLNDKN-IVVRNQSLSLFHQLVN 1137
Query: 239 KREFTLTGLYKRLLDKDAVNAHRAEDD 265
K F L L + AVN + A+ D
Sbjct: 1138 KYPFLLESWIGLQLVQSAVNTNTADID 1164
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 189 SKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSL 230
S + ++D+K K ++ N + TN K R DL+ +D L
Sbjct: 12 SGNDALNDKKGTKTSETNDRNSTNNTKERDELEDLSEEDLQL 53
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 196 DEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSI-----QNKST--KKREFTLTGLY 248
+++ K +DLN+QK +K+ ++ NDLT ++L + K T KRE L
Sbjct: 150 EKQVKTLHDLNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQTLVSKREAALEEFQ 209
Query: 249 KRLLDKD 255
+LL ++
Sbjct: 210 SKLLIRE 216
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 188 FSKDTCIDDEKSK---KENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFT 243
F KDT +++ KS K ND K +K+ R ND D + S + K +T
Sbjct: 214 FIKDTEVNNAKSLAWWKSNDFTNYKFEQIKQYRMRANDTVLIDYTFSSSTYNDIKAVYT 272
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 267 VILIECVLALRDEFLTWADESCKTIH 292
+ ++ VLA R L W+ E+C T H
Sbjct: 613 LFVVGAVLAWRRRVLRWSQEACDTFH 638
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 75 ESLKNAPTFKQRANAIVSFLNELPKPICLVAHNGNSFDY 113
ESL N TF + N I ++ P + H NS+++
Sbjct: 671 ESLNNLSTFSELLNIIDGLSSDSRSPKTVGTHESNSYEF 709
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 200 KKENDLNQQKCTNLKKGRKNKNDL---TTQDQSLSIQN-KSTKKREFTLTGLYKRLLDKD 255
+ E++ ++ + N +K D+ T++D+ ++ N ++ K+R+F G +RL K
Sbjct: 43 ESESEEDEDQILNKEKKEGQSEDMFSDTSEDEKRTLPNDEAQKRRDFIENGDAERLAHKG 102
Query: 256 AVNAHRAEDD 265
N DD
Sbjct: 103 LRNKEVLNDD 112
>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 4.3
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 170 ELDVSTENWEEIDNLCASFSKDTCIDD-EKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQ 228
E T + E+ D+ S S +CI D E+S +++LN+ +N KK ++ T +
Sbjct: 250 ESSYETSSSEQSDD---SSSSSSCISDSEESSSDDELNE--LSNEKKANSPTQNVDTSSK 304
Query: 229 --SLSIQNKSTKKR 240
S+ QN+ + R
Sbjct: 305 LSSVKFQNEDDEDR 318
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.3
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 139 GFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEK 198
G + I KTT + LP ++ + ASE+L L + T N + +C + E
Sbjct: 142 GIKAIFKTTVQFLPTRLAKIFEKKASEVLKDNL-LQTCNSKREGEVC-DVKEPAVASSES 199
Query: 199 SKKENDLNQQKCTNLKKGRKNKNDLTTQDQSL 230
S ND+ Q+ N+ R N Q++ L
Sbjct: 200 SDCFNDM--QELNNIVDLRDYSNSRFQQNRLL 229
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 176 ENWEE---IDNLCASFSKDTCIDDEKSKKENDLNQQKCTNL 213
E WE+ ++ AS +K T D +K K+E+ ++ C+NL
Sbjct: 125 EEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPACSNL 165
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.6
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 13/142 (9%)
Query: 139 GF-RKILKTTQKSLPLKMNTSKDDSASELLWPELDVS------TENWEEIDNLCASFS-- 189
GF +K +T+ + LPL S+ +S E P DV+ +W+ ID A +
Sbjct: 310 GFSQKKAQTSNERLPLFAEKSETNSNGEASLPS-DVNHGVKEDEGSWQLIDIETAKNAMS 368
Query: 190 -KDTCIDDEKSKKENDLNQQKCTNLKKGRKN--KNDLTTQDQSLSIQNKSTKKREFTLTG 246
KD +DE++ + N+ + ++ L Q+ S+ +K
Sbjct: 369 RKDNPYNDERAGIYEIFLKAHLMNMPRLLRDIDSRHLLEFTQTASLYRPMSKNLSMRFVS 428
Query: 247 LYKRLLDKDAVNAHRAEDDCVI 268
++ K+++N+H DD ++
Sbjct: 429 SFEASTKKESINSHSETDDSIL 450
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 106 HNGNSFDYKILLAECNDAGILLPSDLLC--IDSLIGFRKILKTT 147
H+G ++ + E + G L DL + LIGFRK L +T
Sbjct: 149 HSGTIAQWRDTIEEIHRRGFYLVLDLTISTLGDLIGFRKYLNST 192
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.8 bits (54), Expect = 7.6
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 157 TSKDDSASELLWPELDVSTENWEEIDNLCAS--FSKDTCIDDEKSKKENDLNQQKCTNLK 214
T ++ EL+ E + + + N+ S F + C++ E ++NDL + + +LK
Sbjct: 462 TGAGNNCLELVGKENNCKNQYPQYFSNIDESNAFINNQCLELEALNRKNDLIRGELDSLK 521
Query: 215 -KGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRL 251
K + L + + +L ++ K + E T L K L
Sbjct: 522 EKNLVAQKQLKSANNTLHVRAKHIQILENTNQSLKKNL 559
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.8 bits (54), Expect = 7.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 110 SFDYKILLAECNDAGILLPSDLLCIDSLIG 139
SFD +L+ GIL+ +DLL I S G
Sbjct: 475 SFDRTLLILPGGSTGILIINDLLVIRSFAG 504
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 148 QKSLPLKMNTSKDDSASELL---WPELDVSTE-NWEEIDNLCASFSKDT 192
Q L +K +T KDD+ ELL E++V+ E N E++D L KDT
Sbjct: 228 QAKLGIKASTQKDDNDFELLNNTTGEIEVTKELNEEQLDAL-RKKDKDT 275
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,449,293
Number of Sequences: 5004
Number of extensions: 64519
Number of successful extensions: 247
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 27
length of query: 300
length of database: 2,362,478
effective HSP length: 72
effective length of query: 228
effective length of database: 2,002,190
effective search space: 456499320
effective search space used: 456499320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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