Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000125-TA|BGIBMGA000125-PA|IPR013520|Exonuclease, RNase
T and DNA polymerase III, IPR006055|Exonuclease,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044 46 4e-05
03_02_0708 + 10577931-10579511,10579613-10579706,10580694-105808... 43 3e-04
04_04_0027 + 22232781-22233051,22234256-22234329,22234471-222346... 33 0.21
08_01_1081 + 11058119-11059756 31 0.85
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 31 0.85
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 31 1.5
11_06_0284 + 21909758-21913645 30 2.6
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785... 30 2.6
02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000... 30 2.6
09_02_0288 + 6936867-6936879,6936965-6937038,6937445-6937588,693... 29 4.6
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 29 4.6
02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609... 29 4.6
06_02_0044 - 10913591-10913720,10914268-10914572,10915191-109153... 29 6.0
11_01_0758 + 6362500-6363233,6363709-6365500 28 8.0
04_03_0622 + 18106448-18106508,18107431-18108281 28 8.0
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367... 28 8.0
>04_04_1204 - 31715270-31715466,31716121-31716326,31716665-31717044
Length = 260
Score = 46.0 bits (104), Expect = 4e-05
Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 13/147 (8%)
Query: 6 TYVFFDIETTGLPFQERNKTKITELCFLAVSRDDLDIQSGLPPIKKLSFVLNPEKKIHPD 65
T + FD+ETTG F + ++ LC L+ ++ ++ + P + + + KI D
Sbjct: 61 TILVFDLETTGY-FHKDHRIVEFALCDLSGGKNST-FETLVNPERTVPDYVEHLIKIGTD 118
Query: 66 VVVLTGLTNESLKNAPTFKQRANAIVSFLN--ELP-KPICLVAHNGNSFDYKILLAECND 122
+V G+ P F +++F+ + P KP+ VAHN FD + L E +
Sbjct: 119 LVCRPGI--------PRFSDVIPLLLAFVRSRQAPGKPVLWVAHNAKQFDARFLAQEFDR 170
Query: 123 AGILLPSDLLCIDSLIGFRKILKTTQK 149
LP+D L D+L+ +K++K K
Sbjct: 171 CSAPLPADWLFFDTLLLAKKMVKAEGK 197
>03_02_0708 +
10577931-10579511,10579613-10579706,10580694-10580856,
10581286-10581491,10581854-10582062
Length = 750
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 55 VLNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSFL---NELPKPICLVAHNGNSF 111
++NPE++I V + + P F++ ++ ++ KP+ VAHNG SF
Sbjct: 586 LINPEREIKNAYVHGISSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSF 645
Query: 112 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSL 151
D L+ E + I +P D L +D+L R+++ + + L
Sbjct: 646 DVPFLMYEFQRSKIEMPGDWLFVDTLPIARQLIGSDGEKL 685
>04_04_0027 +
22232781-22233051,22234256-22234329,22234471-22234638,
22234812-22234971,22235062-22235145,22235781-22236078,
22236158-22236364,22236465-22236735,22236971-22237055,
22237141-22237182,22237302-22237350,22237825-22237894,
22238314-22238463,22238592-22238619,22238856-22238990,
22240693-22241469,22242133-22242192,22242367-22242413
Length = 991
Score = 33.5 bits (73), Expect = 0.21
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 154 KMNTSK--DDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCT 211
K TS+ DDS +L+ + E+ D SFS+ D SKK+ +LN + T
Sbjct: 275 KKQTSENGDDSKLQLVVRTPPAESLESEDEDGFPVSFSESKKRTDGSSKKKGNLNNKMST 334
Query: 212 NLKKGRKN--------KNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDA 256
+K + + ++ ++ +S +NK K ++ + G+ K + +D+
Sbjct: 335 EDRKRKSSAVGDHHDPSGEVKDENDGVSKKNKKAKAKKTAVGGVEKEIKQEDS 387
>08_01_1081 + 11058119-11059756
Length = 545
Score = 31.5 bits (68), Expect = 0.85
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 199 SKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLD 253
+K ++ + K KK RKN +D ++ L ++ K K E GL +LD
Sbjct: 296 NKNPDETKETKKKKKKKRRKNNDDDEEEEPGLKVKKKKNKNEEKERPGLKVTMLD 350
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 31.5 bits (68), Expect = 0.85
Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 137 LIGFRKILKTTQKSLP-LKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCID 195
L+ RK + T + L L D A + L +LD +T++ +E++ S SK+
Sbjct: 623 LVDERKTVTTLNRELEALVKQLQMDSEARKALEADLDEATKSLDEMNRSALSLSKEL--- 679
Query: 196 DEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKD 255
+E + +++ L +K L K + +TT+ +++T+ + ++ L +
Sbjct: 680 EETNSRKDTLEAEK-KMLSKALAEQQKITTE------AHENTEDAQNLISRLQTE-KESF 731
Query: 256 AVNAHRAEDDCVILIECVLALRDEFLTWADESCKTI 291
+ A E++ + +L LR + T + KT+
Sbjct: 732 EMRARHLEEELALAKGEILRLRRQISTSRSQKAKTL 767
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 181 IDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLS-IQNKSTKK 239
ID+L + D + +K +EN + T L +KN T+ S + N TK+
Sbjct: 27 IDSLKKKITSDRFVYIQKRVEENSIKLSPIT-LHSHNLSKNRQTSTSNSTDLVSNLLTKR 85
Query: 240 REFTLTGLYKRLLDKDAVNAHRAEDDC 266
+E L + R D +D+C
Sbjct: 86 KEDALCAVNSRESSPDESEGANCQDEC 112
>11_06_0284 + 21909758-21913645
Length = 1295
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 152 PLKMNTSKD-DSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKE-NDLNQQK 209
P+ ++T++ E+ + + E + A+ + T +D+E+ K+ N+ Q
Sbjct: 550 PIHLHTAQYMQILQEVFLKTISCKAQQQERLAAKQATKTATTTLDEERIKQMINEAKQDI 609
Query: 210 CTNLKKGRKNKNDLTTQDQSLSIQNK 235
L+ G+ +KN T + S+S QN+
Sbjct: 610 LRELQGGKPDKNQATGEHTSVSDQNE 635
>04_04_1250 +
32077590-32078000,32078132-32078308,32078437-32078561,
32078629-32078761,32078866-32079015,32079105-32079158,
32079437-32079532,32080021-32080095,32080723-32080824,
32080903-32081589,32081686-32081817,32081916-32082023,
32082170-32082319
Length = 799
Score = 29.9 bits (64), Expect = 2.6
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 147 TQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLN 206
T + + + S D+ +E L + D+S + EE D+ D+ +D+E E+D +
Sbjct: 527 TDEGMKEEDQLSGDEDDTEELDEDQDISDNDSEENDD---ELELDSDMDEENDVSESDDD 583
Query: 207 QQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDA 256
++ L + + DQ +N S K + L+ +L DA
Sbjct: 584 EELSEKLDDSDEGSDQDDDSDQDDKSKNSSRKANKRKLSDYIGQLNAADA 633
>02_04_0205 +
20897376-20897597,20898623-20898774,20899874-20900084,
20900734-20900872,20901310-20901341,20901471-20901557,
20901720-20901932,20903687-20903869,20903979-20904084,
20905042-20905064,20905511-20905570
Length = 475
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 163 ASEL--LWPE----LDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKG 216
A+EL LWPE L + N+ E D+ SF K I+ + ++ ++D K+G
Sbjct: 243 ATELDPLWPEGWVTLGRAQLNFGEPDSAILSFDKALAIEPDNNEAKSDRETAARLVKKRG 302
Query: 217 RKNKNDLTTQDQSLSIQNKSTKKRE 241
+ + + L+ + ++ S K+++
Sbjct: 303 QLHSSGLSANKRRFTVGEDSEKEKD 327
>09_02_0288 +
6936867-6936879,6936965-6937038,6937445-6937588,
6937754-6937958,6938552-6938852,6938952-6939150,
6939393-6939477,6939554-6939595,6939676-6939724,
6939872-6939941,6940296-6940301
Length = 395
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 176 ENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNK 235
EN +++D S+ ++D+ +KK N ++K + + DLT D+ L +
Sbjct: 204 ENTKDVDETKYPNSE---LNDDTTKKSNGAKKRKGDAISQDHAPLMDLTNADEPLVSKEG 260
Query: 236 STKKREFTLTGLYKRLLDKDAVNAHRAEDDCVIL 269
TKK+ G + D N R +D +I+
Sbjct: 261 RTKKKSKKKGGKQLEVGDGKHSNKIRTLEDGLIV 294
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 29.1 bits (62), Expect = 4.6
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 126 LLPSDLLCIDSLIGFRKILKTTQKSLPLKMNTS----KDDSASELLWPELDVSTENWEEI 181
L+P+ L + S + +R K + NT D+ + E+++ E +E
Sbjct: 445 LVPAKLPIVPSCVAWRTRSSWGMKEERISYNTYFEVLSDEPKEDDDDTEVELDDEEDDEN 504
Query: 182 DNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQD 227
D+ C S S D ++E+ ++E + + + KKG + +D D
Sbjct: 505 DDDCNSASCDEEDEEEEEEREEEEEEAQRRKQKKGIDSSDDEMIDD 550
>02_04_0591 -
24159654-24160155,24160233-24160316,24160898-24160944,
24161035-24161103,24161259-24161310,24161693-24161775,
24162312-24162422,24162808-24163211,24163308-24163380,
24163460-24163510,24163882-24164073,24164176-24164302,
24164753-24164934,24165023-24165226,24165738-24165836
Length = 759
Score = 29.1 bits (62), Expect = 4.6
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 137 LIGFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDD 196
++G +K+ +TT + L +SKDDS S S++ ++I + KD
Sbjct: 379 VLGLKKVEETTDSTGKLSKQSSKDDSKSSTRKASGAGSSKKQQKI----SLKQKDETDSK 434
Query: 197 EKSKKENDLNQQ-KCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKD 255
E + K+ L + ++ KG QD + S + +S + + T + LD
Sbjct: 435 EDTAKDLSLKEMVSPKSVSKGSAKTKGSQGQDNNGSKRKRSQEDEQETPRSRKNKGLDAS 494
Query: 256 AVNA 259
V A
Sbjct: 495 LVGA 498
>06_02_0044 -
10913591-10913720,10914268-10914572,10915191-10915391,
10916620-10917042
Length = 352
Score = 28.7 bits (61), Expect = 6.0
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 37 RDDLDIQSGLPPIKKLSFV---LNPEKKIHPDVVVLTGLTNESLKNAPTFKQRANAIVSF 93
R ++ SG P +LS + ++ + P+ G++ S+ ++ Q A S
Sbjct: 31 RQTINCYSGCPSSSELSKIWTFVSDIPNVAPEPNCEQGISMMSISDSGVSNQDNAAGDSS 90
Query: 94 LNELPKPICLVAHNGNSFDYKILLAECNDAGI-LLPSDLLCIDSLIGFRKILKTTQKSLP 152
L ++ L++ G + K L+ ++AG+ LLP L D + G + +T +P
Sbjct: 91 LLDIASAT-LMSDLGTAGKPKSLIGSSSEAGVNLLP---LATDQMAGS---VDSTSAKVP 143
Query: 153 LKMNT---SKDDSASELLWPELDVSTENWEEI 181
+ SKD + ++D+S EN+EE+
Sbjct: 144 YTADQDMFSKDSIYEDFCVDDVDLSFENYEEL 175
>11_01_0758 + 6362500-6363233,6363709-6365500
Length = 841
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 20 QERNKTKITELCFLAVSRDDLDIQSGLPPIKKLS 53
Q+ K +I ++ + R+D+DI SGLP + +S
Sbjct: 687 QQLRKLRILKIAIRQLMRNDIDILSGLPVLTAVS 720
>04_03_0622 + 18106448-18106508,18107431-18108281
Length = 303
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 35 VSRDDLDIQSGLPPIKKLSFVLNPEK-KIHPDVVVLTGLTNESLK 78
+ D + + +K +S L PE + D++ TG T+ESLK
Sbjct: 247 IDNDMIALSQTCKNLKSISLWLKPEHYNVGDDIIFRTGFTDESLK 291
>03_02_0983 -
12933082-12934884,12935669-12936487,12936754-12936795,
12937116-12937244
Length = 930
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 194 IDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLD 253
+ E +KKE ++ +Q + K +N D +Q S+ + +T + T + L D
Sbjct: 127 LPSEFNKKEEEIQKQHSSETK-AIENSRDGDSQTTSICPTSNNTSGQCSTSQDPHPELPD 185
Query: 254 KDAVNAHRAEDD 265
+ ++H+A DD
Sbjct: 186 QIVSDSHQAHDD 197
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,465,702
Number of Sequences: 37544
Number of extensions: 352603
Number of successful extensions: 982
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 21
length of query: 300
length of database: 14,793,348
effective HSP length: 82
effective length of query: 218
effective length of database: 11,714,740
effective search space: 2553813320
effective search space used: 2553813320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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