GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000125-TA|BGIBMGA000125-PA|IPR013520|Exonuclease, RNase
T and DNA polymerase III, IPR006055|Exonuclease,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (300 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   8.0  

>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 205 LNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLL-----DKDAVNA 259
           L +Q C   ++  K    +T   Q L  + +  K+RE  L    ++L      D+D +N+
Sbjct: 127 LEEQNCAMKEQNAKLLEQITGMCQLLQEEKEEAKRREEKLEAQMEKLAAAHQRDRDVLNS 186


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 93  FLNELPK------PICLVAHNGNSFDYKILLAECNDAGILLP 128
           F+N LPK      PI    H+ ++   + +L  CN  G  +P
Sbjct: 344 FINHLPKLLVMRRPIYQPLHHFSAASQRFMLRSCNSLGDHIP 385


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,907
Number of Sequences: 2123
Number of extensions: 12348
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 2
length of query: 300
length of database: 516,269
effective HSP length: 64
effective length of query: 236
effective length of database: 380,397
effective search space: 89773692
effective search space used: 89773692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)