Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000125-TA|BGIBMGA000125-PA|IPR013520|Exonuclease, RNase
T and DNA polymerase III, IPR006055|Exonuclease,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(300 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070563-1|AAL48034.1| 351|Drosophila melanogaster LD40940p pro... 115 7e-26
AE014134-526|AAF51172.1| 351|Drosophila melanogaster CG3165-PA ... 115 7e-26
AY051876-1|AAK93300.1| 395|Drosophila melanogaster LD37002p pro... 33 0.36
AE014297-3579|AAF56317.1| 395|Drosophila melanogaster CG13626-P... 33 0.36
AF146594-1|AAD38688.1| 1377|Drosophila melanogaster protein tyro... 31 1.5
AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA... 31 1.5
AE013599-3236|AAF46739.2| 1377|Drosophila melanogaster CG9856-PA... 31 1.5
AY051925-1|AAK93349.1| 587|Drosophila melanogaster LD40944p pro... 31 2.6
AE013599-1214|AAF58715.1| 587|Drosophila melanogaster CG12391-P... 31 2.6
AF220354-1|AAF32356.1| 1931|Drosophila melanogaster mitotic kine... 30 3.4
AE014134-2054|AAF53089.2| 1931|Drosophila melanogaster CG33694-P... 30 3.4
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 29 5.9
BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p pro... 29 5.9
BT001493-1|AAN71248.1| 864|Drosophila melanogaster LD30051p pro... 29 5.9
AY069780-1|AAL39925.1| 741|Drosophila melanogaster SD02338p pro... 29 7.8
AY069301-1|AAL39446.1| 518|Drosophila melanogaster HL03404p pro... 29 7.8
AE014296-1148|AAN12081.1| 2465|Drosophila melanogaster CG32394-P... 29 7.8
AE014296-515|AAF47691.2| 2252|Drosophila melanogaster CG2083-PA ... 29 7.8
AE013599-1757|AAF58345.1| 607|Drosophila melanogaster CG6209-PA... 29 7.8
>AY070563-1|AAL48034.1| 351|Drosophila melanogaster LD40940p
protein.
Length = 351
Score = 115 bits (277), Expect = 7e-26
Identities = 97/326 (29%), Positives = 145/326 (44%), Gaps = 32/326 (9%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVS---------RDDLDIQSGLPP----I 49
+I+T+ D+ETT LP N+ ITELC A D D Q LP +
Sbjct: 16 KISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVL 75
Query: 50 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFK-QRANAIVSFLNELPKPICLVAHNG 108
KL+ + P + P+ +TGL+N L+ A IVSFL LP P+CLVAHNG
Sbjct: 76 HKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135
Query: 109 NSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQK-SLPLKMNTSKDDSASELL 167
FD+ IL I LP L C+DSL F +I T QK + LK+ + EL
Sbjct: 136 WGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELK 195
Query: 168 WPELDVST--ENWEEIDNLCASFSKDTCIDD---------EKSKKENDLNQQKCTNLKKG 216
P+ + T + E + N+ +T + K K D ++
Sbjct: 196 -PKQNTETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEEQTPP 254
Query: 217 RKNKNDLTTQDQSLS----IQNKSTKKR-EFTLTGLYKRLLDKDAVNAHRAEDDCVILIE 271
++ ++ ++ Q S +NK R + L LY R+ A++AH+AE D V+ +
Sbjct: 255 KRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPALSAHQAEADVVMTTK 314
Query: 272 CVLALRDEFLTWADESCKTIHQIKPL 297
+ +FL +A+E Q+ PL
Sbjct: 315 LIQHYGIDFLAFAEEQAIPFQQVVPL 340
>AE014134-526|AAF51172.1| 351|Drosophila melanogaster CG3165-PA
protein.
Length = 351
Score = 115 bits (277), Expect = 7e-26
Identities = 97/326 (29%), Positives = 145/326 (44%), Gaps = 32/326 (9%)
Query: 3 RITTYVFFDIETTGLPFQERNKTKITELCFLAVS---------RDDLDIQSGLPP----I 49
+I+T+ D+ETT LP N+ ITELC A D D Q LP +
Sbjct: 16 KISTFAVLDLETTNLPAYRNNRVSITELCIYAFEAALLKKKKKEQDQDEQQELPAAPRVL 75
Query: 50 KKLSFVLNPEKKIHPDVVVLTGLTNESLKNAPTFK-QRANAIVSFLNELPKPICLVAHNG 108
KL+ + P + P+ +TGL+N L+ A IVSFL LP P+CLVAHNG
Sbjct: 76 HKLNVLFQPSMVVDPEAERITGLSNYLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNG 135
Query: 109 NSFDYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQK-SLPLKMNTSKDDSASELL 167
FD+ IL I LP L C+DSL F +I T QK + LK+ + EL
Sbjct: 136 WGFDFPILRQAFEKLNIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELK 195
Query: 168 WPELDVST--ENWEEIDNLCASFSKDTCIDD---------EKSKKENDLNQQKCTNLKKG 216
P+ + T + E + N+ +T + K K D ++
Sbjct: 196 -PKQNTETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEEQTPP 254
Query: 217 RKNKNDLTTQDQSLS----IQNKSTKKR-EFTLTGLYKRLLDKDAVNAHRAEDDCVILIE 271
++ ++ ++ Q S +NK R + L LY R+ A++AH+AE D V+ +
Sbjct: 255 KRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPALSAHQAEADVVMTTK 314
Query: 272 CVLALRDEFLTWADESCKTIHQIKPL 297
+ +FL +A+E Q+ PL
Sbjct: 315 LIQHYGIDFLAFAEEQAIPFQQVVPL 340
>AY051876-1|AAK93300.1| 395|Drosophila melanogaster LD37002p
protein.
Length = 395
Score = 33.5 bits (73), Expect = 0.36
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
D EK K+ N NQ K K+ + N++DL +++ + +++E
Sbjct: 234 DGEKGKEANQANQHKPRTRKRSKANRSDLNNSSSKMALDEELQQQQE 280
>AE014297-3579|AAF56317.1| 395|Drosophila melanogaster CG13626-PA
protein.
Length = 395
Score = 33.5 bits (73), Expect = 0.36
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
D EK K+ N NQ K K+ + N++DL +++ + +++E
Sbjct: 234 DGEKGKEANQANQHKPRTRKRSKANRSDLNNSSSKMALDEELQQQQE 280
>AF146594-1|AAD38688.1| 1377|Drosophila melanogaster protein
tyrosine phosphatase ERK protein.
Length = 1377
Score = 31.5 bits (68), Expect = 1.5
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 168 WPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQD 227
+PE+D ++ +D +C + T D + E QQ+ + +K RKNKN+LT +
Sbjct: 232 FPEIDHVVQD-APMDTVC--LEEATRRDRSPALAEPPEQQQQKSEGRKNRKNKNNLTIRI 288
Query: 228 QSLSIQNKS 236
+ I+N S
Sbjct: 289 TDVPIKNSS 297
>AE014297-4072|AAF56669.1| 463|Drosophila melanogaster CG6066-PA
protein.
Length = 463
Score = 31.5 bits (68), Expect = 1.5
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 139 GFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEK 198
G RK K+ +KS + K S E S+ + E+ + +S S + D E
Sbjct: 215 GKRKHKKSEKKSKKKSKKSKKKKSKQE---SSSSSSSSSSEDSSDESSSSSSSSSSDSED 271
Query: 199 SKKENDLNQQKCTN-LKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
+E D+ +K + +KK +K K+ + +D+ S + K +K E
Sbjct: 272 ESEEEDVWLEKTADGIKKPKKKKSSTSKKDKK-SKKKKKKRKSE 314
>AE013599-3236|AAF46739.2| 1377|Drosophila melanogaster CG9856-PA
protein.
Length = 1377
Score = 31.5 bits (68), Expect = 1.5
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 168 WPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQD 227
+PE+D ++ +D +C + T D + E QQ+ + +K RKNKN+LT +
Sbjct: 232 FPEIDHVVQD-APMDTVC--LEEATRRDRSPALAEPPEQQQQKSEGRKNRKNKNNLTIRI 288
Query: 228 QSLSIQNKS 236
+ I+N S
Sbjct: 289 TDVPIKNSS 297
>AY051925-1|AAK93349.1| 587|Drosophila melanogaster LD40944p
protein.
Length = 587
Score = 30.7 bits (66), Expect = 2.6
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)
Query: 101 ICLVAHNGNSFDYKILLAECNDAGILLPSDLL-------CIDSL---IGFRKILKTTQKS 150
+CL ++ +LL C + IL P D + C+ SL I RK L+TT +
Sbjct: 251 VCLFKKQIDATPADMLLVICPNVSIL-PKDFMPQFICTKCMGSLTIAIQLRKQLETTDQE 309
Query: 151 LPLKMNTSKDDSASELLWPELDV----STENWEEIDN-LCASFSKDTCIDDEKSKKENDL 205
L +++ SK+ + +D S+E+ +E+D+ S T D S +D
Sbjct: 310 LRKRLSRSKNKVRRPRGYVVIDAPVTDSSEDEDELDDEFKVSDVAGTTSADSDSADSDDS 369
Query: 206 NQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKR 240
++K +GR K L S + + KK+
Sbjct: 370 EKEKKKPGPRGRPRKKPLKRGTDSDGEPSSAQKKK 404
>AE013599-1214|AAF58715.1| 587|Drosophila melanogaster CG12391-PA
protein.
Length = 587
Score = 30.7 bits (66), Expect = 2.6
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)
Query: 101 ICLVAHNGNSFDYKILLAECNDAGILLPSDLL-------CIDSL---IGFRKILKTTQKS 150
+CL ++ +LL C + IL P D + C+ SL I RK L+TT +
Sbjct: 251 VCLFKKQIDATPADMLLVICPNVSIL-PKDFMPQFICTKCMGSLTIAIQLRKQLETTDQE 309
Query: 151 LPLKMNTSKDDSASELLWPELDV----STENWEEIDN-LCASFSKDTCIDDEKSKKENDL 205
L +++ SK+ + +D S+E+ +E+D+ S T D S +D
Sbjct: 310 LRKRLSRSKNKVRRPRGYVVIDAPVTDSSEDEDELDDEFKVSDVAGTTSADSDSADSDDS 369
Query: 206 NQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKR 240
++K +GR K L S + + KK+
Sbjct: 370 EKEKKKPGPRGRPRKKPLKRGTDSDGEPSSAQKKK 404
>AF220354-1|AAF32356.1| 1931|Drosophila melanogaster mitotic
kinesin-like motor proteinCENP-ana protein.
Length = 1931
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/56 (26%), Positives = 34/56 (60%)
Query: 214 KKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVIL 269
+ G + ++ TT ++SL+++ ++ E TLT Y+R +++ + RA+++ IL
Sbjct: 1078 ESGVELQHHSTTAEESLNVEKPIQEQTERTLTTEYERRIEQLEESLQRAQEELSIL 1133
>AE014134-2054|AAF53089.2| 1931|Drosophila melanogaster CG33694-PA,
isoform A protein.
Length = 1931
Score = 30.3 bits (65), Expect = 3.4
Identities = 15/56 (26%), Positives = 34/56 (60%)
Query: 214 KKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDKDAVNAHRAEDDCVIL 269
+ G + ++ TT ++SL+++ ++ E TLT Y+R +++ + RA+++ IL
Sbjct: 1078 ESGVELQHHSTTAEESLNVEKPIQEQTERTLTTEYERRIEQLEESLQRAQEELSIL 1133
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 62 IHPDVVVLTGLTNESLKNAPTFKQRANAIVSFLNELPKPICLV 104
IHP+ V T + LKNAP+ QR +++ L +L +V
Sbjct: 557 IHPESVEYTAFVPDGLKNAPSVFQR--TVINALGDLANSFVIV 597
>BT003485-1|AAO39488.1| 328|Drosophila melanogaster SD13756p
protein.
Length = 328
Score = 29.5 bits (63), Expect = 5.9
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 139 GFRKILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEK 198
G RK K+ +KS + K S E S+ + E+ + +S S + D E
Sbjct: 233 GKRKHKKSEKKSKKKSKKSKKKKSKQE---SSSSSSSSSSEDSSDESSSSSSSSSSDSED 289
Query: 199 SKKENDLNQQKCTN-LKKGRKNKNDLTTQDQSLSIQNK 235
+E D+ +K + +KK +K K+ + +D+ + K
Sbjct: 290 ESEEEDVWLEKTADGIKKPKKKKSSTSKKDKKSKKKKK 327
>BT001493-1|AAN71248.1| 864|Drosophila melanogaster LD30051p
protein.
Length = 864
Score = 29.5 bits (63), Expect = 5.9
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 150 SLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKK--ENDLNQ 207
SLPL N ++ ++D EN E+ +N + ++D+ D K K E D+ +
Sbjct: 11 SLPLPQNNDEEQ--------KIDTVAENEEDQENTQLTDARDSHEKDRKPSKERERDIEK 62
Query: 208 QKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
+K LK+ K K+ +D+ + +K+R+
Sbjct: 63 KKIRELKR-EKIKDRDRDRDRDREKDKEKSKERD 95
>AY069780-1|AAL39925.1| 741|Drosophila melanogaster SD02338p
protein.
Length = 741
Score = 29.1 bits (62), Expect = 7.8
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 154 KMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKS--KKENDLNQQKCT 211
K+NT D+ A E E + E++D L +D + DE KKE+ N Q+
Sbjct: 567 KINTDLDNKAKEER--ERLIKKAAGEDMDEL----DEDALMQDEPVPIKKESSANGQQLK 620
Query: 212 NLKKGRKNKNDLTTQDQSLSIQNKSTK 238
N G K K ++ + Q+K+ K
Sbjct: 621 NGASGSKKKKSSDSKKSQANEQSKNEK 647
>AY069301-1|AAL39446.1| 518|Drosophila melanogaster HL03404p
protein.
Length = 518
Score = 29.1 bits (62), Expect = 7.8
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 154 KMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKS--KKENDLNQQKCT 211
K+NT D+ A E E + E++D L +D + DE KKE+ N Q+
Sbjct: 344 KINTDLDNKAKEER--ERLIKKAAGEDMDEL----DEDALMQDEPVPIKKESSANGQQLK 397
Query: 212 NLKKGRKNKNDLTTQDQSLSIQNKSTK 238
N G K K ++ + Q+K+ K
Sbjct: 398 NGASGSKKKKSSDSKKSQANEQSKNEK 424
>AE014296-1148|AAN12081.1| 2465|Drosophila melanogaster CG32394-PA
protein.
Length = 2465
Score = 29.1 bits (62), Expect = 7.8
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKK 239
D EK K ++ ++ ++ K+GRK K+D +S S +K TKK
Sbjct: 360 DKEKEKDKDKEKDKETSSFKRGRKTKSD-----KSASKSSKKTKK 399
>AE014296-515|AAF47691.2| 2252|Drosophila melanogaster CG2083-PA
protein.
Length = 2252
Score = 29.1 bits (62), Expect = 7.8
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 154 KMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKS--KKENDLNQQKCT 211
K+NT D+ A E E + E++D L +D + DE KKE+ N Q+
Sbjct: 2078 KINTDLDNKAKEER--ERLIKKAAGEDMDEL----DEDALMQDEPVPIKKESSANGQQLK 2131
Query: 212 NLKKGRKNKNDLTTQDQSLSIQNKSTK 238
N G K K ++ + Q+K+ K
Sbjct: 2132 NGASGSKKKKSSDSKKSQANEQSKNEK 2158
>AE013599-1757|AAF58345.1| 607|Drosophila melanogaster CG6209-PA
protein.
Length = 607
Score = 29.1 bits (62), Expect = 7.8
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 193 CID-DEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
C++ D K ND +KC KK + + + T+ + ++Q K + ++
Sbjct: 510 CVESDRKKNSANDAAMKKCEEDKKKKSQEAEKKTKSEQAALQKKCAEAKK 559
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,812,672
Number of Sequences: 52641
Number of extensions: 643875
Number of successful extensions: 2055
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2032
Number of HSP's gapped (non-prelim): 32
length of query: 300
length of database: 24,830,863
effective HSP length: 85
effective length of query: 215
effective length of database: 20,356,378
effective search space: 4376621270
effective search space used: 4376621270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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