Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000125-TA|BGIBMGA000125-PA|IPR013520|Exonuclease, RNase
T and DNA polymerase III, IPR006055|Exonuclease,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(300 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26940.4 68418.m03215 exonuclease family protein contains exo... 45 7e-05
At5g26940.3 68418.m03214 exonuclease family protein contains exo... 45 7e-05
At5g26940.2 68418.m03213 exonuclease family protein contains exo... 45 7e-05
At5g26940.1 68418.m03212 exonuclease family protein contains exo... 45 7e-05
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p... 32 0.54
At2g22795.1 68415.m02704 expressed protein 31 0.71
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont... 30 1.6
At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical... 30 1.6
At5g38490.1 68418.m04652 hypothetical protein contains Pfam prof... 30 2.2
At4g32610.1 68417.m04643 mitochondrial glycoprotein family prote... 30 2.2
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei... 30 2.2
At2g36420.1 68415.m04471 expressed protein 30 2.2
At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3) s... 30 2.2
At2g24650.1 68415.m02944 transcriptional factor B3 family protei... 29 2.9
At1g10890.1 68414.m01251 F-box family protein contains Pfam PF00... 29 2.9
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 29 3.8
At2g12875.1 68415.m01402 hypothetical protein 29 3.8
At5g60030.1 68418.m07527 expressed protein 29 5.0
At5g51270.1 68418.m06356 protein kinase family protein contains ... 29 5.0
At4g39190.1 68417.m05549 expressed protein ; expression support... 29 5.0
At3g58840.1 68416.m06558 expressed protein 29 5.0
At3g28770.1 68416.m03591 expressed protein 29 5.0
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 29 5.0
At3g04380.1 68416.m00463 SET domain-containing protein (SUVR4) n... 29 5.0
At1g56660.1 68414.m06516 expressed protein 29 5.0
At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2... 28 6.6
At4g33740.2 68417.m04791 expressed protein 28 6.6
At4g33740.1 68417.m04790 expressed protein 28 6.6
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 6.6
At1g80870.1 68414.m09489 protein kinase family protein contains ... 28 6.6
At1g06320.1 68414.m00668 hypothetical protein 28 6.6
At3g48710.1 68416.m05319 expressed protein putative protein - Ar... 28 8.8
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 28 8.8
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 28 8.8
>At5g26940.4 68418.m03215 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 62 IHPDVVVLT-----GLTNESL--KNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSF 111
++P VV +T G+ N+ + P ++ + ++ KP + LVAHNG SF
Sbjct: 148 VNPGVVPITNAHIHGIRNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSF 207
Query: 112 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 153
D++ L+ E N +P + L +DSL R+ +K+ + ++ L
Sbjct: 208 DFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSVEPTVKL 249
>At5g26940.3 68418.m03214 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 62 IHPDVVVLT-----GLTNESL--KNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSF 111
++P VV +T G+ N+ + P ++ + ++ KP + LVAHNG SF
Sbjct: 148 VNPGVVPITNAHIHGIRNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSF 207
Query: 112 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 153
D++ L+ E N +P + L +DSL R+ +K+ + ++ L
Sbjct: 208 DFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSVEPTVKL 249
>At5g26940.2 68418.m03213 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 62 IHPDVVVLT-----GLTNESL--KNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSF 111
++P VV +T G+ N+ + P ++ + ++ KP + LVAHNG SF
Sbjct: 148 VNPGVVPITNAHIHGIRNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSF 207
Query: 112 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 153
D++ L+ E N +P + L +DSL R+ +K+ + ++ L
Sbjct: 208 DFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSVEPTVKL 249
>At5g26940.1 68418.m03212 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 316
Score = 44.8 bits (101), Expect = 7e-05
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 62 IHPDVVVLT-----GLTNESL--KNAPTFKQRANAIVSFLNELPKP---ICLVAHNGNSF 111
++P VV +T G+ N+ + P ++ + ++ KP + LVAHNG SF
Sbjct: 148 VNPGVVPITNAHIHGIRNDMVCRPEVPRMEELIPIFLRYVESRQKPGGYVMLVAHNGKSF 207
Query: 112 DYKILLAECNDAGILLPSDLLCIDSLIGFRKILKTTQKSLPL 153
D++ L+ E N +P + L +DSL R+ +K+ + ++ L
Sbjct: 208 DFQFLINEFNRCSYEIPHNWLLLDSLPLARENMKSVEPTVKL 249
>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
protein contains Pfam profile PF00010: Helix-loop-helix
DNA-binding domain; PMID: 12679534; putative bHLH084
transcription factor
Length = 328
Score = 31.9 bits (69), Expect = 0.54
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 149 KSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDT-CIDDEKSKKENDLNQ 207
KSL L + T ++ +L PE ++T E++ N C S K T +K+K+ N +
Sbjct: 111 KSL-LPLETVAENHDHSMLQPENSLTTTTDEKMFNQCESSKKRTRATTTDKNKRANKARR 169
Query: 208 -QKCTNLKKGRKNKND 222
QKC + +N +
Sbjct: 170 SQKCVEMSGENENSGE 185
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 31.5 bits (68), Expect = 0.71
Identities = 21/98 (21%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCI-DDEKSKKEN 203
K ++S + K+ A E + E+ +E + + +SF ++T +DE +KE
Sbjct: 455 KEKEESSSQEETMDKETEAKEKVESSSQEKNED-KETEKIESSFLEETKEKEDETKEKEE 513
Query: 204 DLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
+Q+K + K+ + ++Q+++ +N+ +K E
Sbjct: 514 SSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEE 551
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 159 KDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRK 218
K++S+S+ E + T++ EE + +KD ++EK +KE +Q++ + K
Sbjct: 511 KEESSSQEKTEEKETETKDNEESSS--QEETKDK--ENEKIEKEEASSQEESKENETETK 566
Query: 219 NKNDLTTQDQSLSIQNKSTKKRE 241
K + ++Q+++ +N+ +K E
Sbjct: 567 EKEESSSQEETKEKENEKIEKEE 589
>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor (Dentin phosphophoryn DPP,
Dentin sialoprotein DSP) [Homo sapiens]
Length = 792
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 170 ELDVSTENWE--EIDNLCASFSKDTCIDDEKSKK--ENDLNQQKCTNLKKGRKNKNDLTT 225
E DV TEN++ + S ++D ++++ K E D+N+ + + ++ +N+ +
Sbjct: 140 EQDVETENFQLNPVHGETLSVAEDKADQEKETTKKIEKDINEMEVDSKQEDEENETEDAK 199
Query: 226 QDQSLSIQNKSTK 238
+S + +STK
Sbjct: 200 HSESAQVPEESTK 212
>At1g10290.1 68414.m01159 dynamin-like protein 6 (ADL6) identical to
dynamin-like protein 6 (ADL6) [Arabidopsis thaliana]
GI:6651399; contains Pfam profiles PF01031: Dynamin
central region, PF00350: Dynamin family, PF02212:
Dynamin GTPase effector domain, PF00169: PH domain
Length = 914
Score = 30.3 bits (65), Expect = 1.6
Identities = 23/98 (23%), Positives = 43/98 (43%)
Query: 154 KMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNL 213
KM D EL W +V +++L A+ K + + KE+ LNQ +
Sbjct: 718 KMVRKPIDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKAKEDMLNQLYSSIS 777
Query: 214 KKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRL 251
G + L +DQ++ + + +K+ L+ L ++L
Sbjct: 778 AIGNERIESLIQEDQNVKRRRERYQKQSSLLSKLTRQL 815
>At5g38490.1 68418.m04652 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 364
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 147 TQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLN 206
++K L +N + S+S L P L+ STE + + S S +C+ + ++K +
Sbjct: 137 SEKKLFDNLNGASTSSSSLLNLPCLEPSTETKDVPNPNYQSSSPSSCLTGKTNRKRRAVE 196
Query: 207 QQKCTNLKK 215
Q+K +KK
Sbjct: 197 QRKSGKVKK 205
>At4g32610.1 68417.m04643 mitochondrial glycoprotein family protein
/ MAM33 family protein low similarity to SP|P40513
Mitochondrial acidic protein MAM33, mitochondrial
precursor {Saccharomyces cerevisiae}; contains Pfam
profile PF02330: Mitochondrial glycoprotein
Length = 557
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVST--ENWEEIDNLCASFSKDTCIDDEKSKKE 202
K ++ L K K+ + E L + V+T EN ++ D+ K+ ++DE KKE
Sbjct: 155 KEAERQLSKKERKKKELAELEALLADFGVATKDENGQQ-DSQDKGEKKE--VNDEGEKKE 211
Query: 203 NDLNQQKCTNLKKGRKNKNDLTTQDQS 229
N + K + KK +K+K + QS
Sbjct: 212 NTTGESKASK-KKKKKDKQKELKESQS 237
>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
(PRHA) identical to Pathogenesis-related homeodomain
protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
Length = 796
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQ----SLSIQNKSTKKREFTL 244
D K K+E+D T + +K+++ + T +Q S+S++NK ++R F L
Sbjct: 407 DRRKRKRESDAGSTLVTMCESSKKDQDVVETLEQSERDSVSVENKGGRRRMFRL 460
>At2g36420.1 68415.m04471 expressed protein
Length = 439
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 140 FRKILKTTQKSLPLKMNTSKDDSASELLWPELDV------STENWEEIDNLCASFSKDTC 193
F K+ L KM+ +D+ E E D S E +E++D A S+ C
Sbjct: 300 FEKLAGLDPVELEGKMSEEEDEEEEEYEESEEDDNIRIYDSDEEYEDVDEAMARESR--C 357
Query: 194 IDDEKSKKENDLNQQK 209
+DEK KK ND Q+K
Sbjct: 358 AEDEKRKK-NDERQKK 372
>At1g59610.1 68414.m06704 dynamin-like protein, putative (ADL3)
strong similarity to dynamin-like protein 6 (ADL6)
[Arabidopsis thaliana] GI:6651399; contains Pfam
profiles PF01031: Dynamin central region, PF00350:
Dynamin family, PF02212: Dynamin GTPase effector domain,
PF00169: PH domain; identical to cDNA dynamin-like
protein ADL3, GI:4803835
Length = 920
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/98 (23%), Positives = 42/98 (42%)
Query: 154 KMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNL 213
KM D EL W +V +++L A+ K + + KE+ LNQ +
Sbjct: 725 KMVRKPVDPEEELRWMSQEVRGYVEAVLNSLAANVPKAVVLCQVEKSKEDMLNQLYSSIS 784
Query: 214 KKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRL 251
G + L +DQ++ + +K+ L+ L ++L
Sbjct: 785 AIGNERIESLIQEDQNVKRRRDRYQKQSSLLSKLTRQL 822
>At2g24650.1 68415.m02944 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 1440
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 185 CASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQ----SLSIQNKSTKKR 240
C KD I D+ SK++ND + K + ++ LT Q +L+I S KK
Sbjct: 572 CKKIRKDVNIKDDNSKEKNDKEESKSVDGERKYLRGTYLTPSSQKHFVTLTITPSSIKKD 631
Query: 241 EFTLTGLYKR 250
L+ + R
Sbjct: 632 RLILSPQFAR 641
>At1g10890.1 68414.m01251 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 592
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDK 254
++E+ ++ +L +QK +++ + + + + L +NKS K F L+ + D
Sbjct: 181 EEERYRELEELQRQKEEAMRRKKAEEEEERLKQMKLLGKNKSRPKLSFALSSKMTTMSDL 240
Query: 255 DAVNAHRAEDDCVILIECVLALRDEFLTW 283
D + AE C + C+ +R W
Sbjct: 241 DEIMV--AEILCRTPMTCLKTVRSVCKKW 267
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 194 IDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKR-EFTLTGLYKRLL 252
+D+ + + +L+ + K+ + D T+++ L K+ E L K L
Sbjct: 109 VDETHVQDKENLSSSLQSAEKRYSDKELDAKTKEEELRATITEMKENIESLQEKLSKEKL 168
Query: 253 DK-DAVNAHRAEDDCVILIECV-LALRDE 279
K DA+ HR E DC ++ E + ++LR+E
Sbjct: 169 SKLDAIENHRREKDCRVVAEKLQVSLREE 197
>At2g12875.1 68415.m01402 hypothetical protein
Length = 325
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTG 246
+ EKS++E ++K G ++ ND TT ++ S + S+ ++ + G
Sbjct: 127 EQEKSEEEESEEEEKEEGNDDGEESSNDSTTTEEPSSTEEPSSSEQNKAIEG 178
>At5g60030.1 68418.m07527 expressed protein
Length = 292
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 189 SKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
+KD + DEK K++ + ++Q+ KK +K K + ++ +S + KS KKR+
Sbjct: 220 NKDEDVVDEKEKEKLE-DEQRSGERKKEKKKKRK--SDEEIVSEERKSKKKRK 269
>At5g51270.1 68418.m06356 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 819
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 164 SELLWPELDVSTENWEEIDNLCASFSKD 191
S L+ P+L WEEI N +SFS+D
Sbjct: 436 SSLVAPKLQYQEFTWEEIINATSSFSED 463
>At4g39190.1 68417.m05549 expressed protein ; expression supported
by MPSS
Length = 277
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 188 FSKDTCIDDEK-SKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKK 239
FS+D EK S+ EN+ Q N K + K +T S+ K TK+
Sbjct: 117 FSQDEMRSGEKQSEAENEAKQSITENKAKENEEKQSITESRVKKSVTEKKTKR 169
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 194 IDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLD 253
++D +K +D +Q + RK + D+ ++Q L+ +N+ K+R LTG + + D
Sbjct: 4 VEDRAAKGISDYDQGGVKTTELERKIE-DMENKNQELTRENRELKERLERLTGEIEEMKD 62
Query: 254 KDA 256
+A
Sbjct: 63 VEA 65
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 145 KTTQKSLPLKMNTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCI-DDEKS-KKE 202
K +K + + + + + +L + + T+ +E +N + +D +D KS KKE
Sbjct: 1037 KREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKE 1096
Query: 203 NDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKRE 241
D ++K K RK + D ++ L QN + KK +
Sbjct: 1097 EDKKEKKKHEESKSRKKEEDKKDMEK-LEDQNSNKKKED 1134
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 200 KKENDLNQQKCTNLKKGRKNKNDLTTQDQS-LSIQNKSTKKRE 241
KKE D + LKK NK + T + S L +NK K+++
Sbjct: 958 KKEEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKK 1000
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 170 ELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQS 229
E++ S E+D SKD ++ KKE ++ + + LKK +++ T+ +++
Sbjct: 1167 EIESSKSQKNEVDKKEKKSSKD-----QQKKKEKEMKESEEKKLKKNEEDRKKQTSVEEN 1221
Query: 230 LSIQNKSTKKRE 241
+ K TKK +
Sbjct: 1222 K--KQKETKKEK 1231
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 196 DEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKR 250
DE+ + E N C N KKGRK TQD L + K +F+ + K+
Sbjct: 525 DERLRNEKMNNS--CCNSKKGRKKARKHYTQDDDLMGSTITRNKGKFSRSSQKKK 577
>At3g04380.1 68416.m00463 SET domain-containing protein (SUVR4)
nearly identical to Su(VAR)3-9-related protein 4
[Arabidopsis thaliana] GI:17066863; contains Pfam
profiles PF00856: SET domain, PF05033: Pre-SET motif;
identical to cDNA Su(VAR)3-9-related protein 4 (SUVR4)
GI:17066862, which is an SET domain protein similar to
Drosophila SU(VAR)3-9
Length = 492
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 142 KILKTTQKSLPLKMNTSKDDSASELLWPELDVSTENWE--EIDNLCASFSKDTCIDDEKS 199
K+LK +++ L + D+ +L L+ + NW ++DN A ++DE
Sbjct: 28 KVLKALERTRQLDI---PDEKTMPVLMKLLEEAGGNWSYIKLDNYTALVDAIYSVEDENK 84
Query: 200 KKENDLNQQKCTNLK 214
+ E N + NLK
Sbjct: 85 QSEGSSNGNRGKNLK 99
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 159 KDDSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRK 218
K+ ++ E D +E D CA K +K KKE D + +K KG+K
Sbjct: 233 KEHDETDQEMKEKDSKKNKKKEKDESCAEEKKK---KPDKEKKEKDESTEKEDKKLKGKK 289
Query: 219 NKNDLTTQDQSLSIQNKSTKKREFT 243
K + ++ + K TK+ + T
Sbjct: 290 GKGEKPEKED----EGKKTKEHDAT 310
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 195 DDEKSKKENDLNQQ--KCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLL 252
+DE+ KKE+D Q K + KK +K + D + ++ +K K+++ + K+L
Sbjct: 227 EDEEKKKEHDETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKKEKDESTEKEDKKLK 286
Query: 253 DKDAVNAHRAEDD 265
K ++D
Sbjct: 287 GKKGKGEKPEKED 299
>At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2
protein-related contains weak hit to Pfam profile
PF05477: Surfeit locus protein 2 (SURF2)
Length = 291
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 189 SKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQ 228
+K+ ++DE KK+ N +K N K K KN D+
Sbjct: 133 AKENGVEDEDKKKKKKKNNKKKKNKKSVEKKKNGEDVADE 172
>At4g33740.2 68417.m04791 expressed protein
Length = 227
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDK 254
D+E++K E D ++ + G +K+D T +++ S +++ +K + T +
Sbjct: 146 DEEENKHEEDEIDEQDQSKNAGDTDKDDETLEEEKESGMSENDEKEKETNHADEIDMTVD 205
Query: 255 DAVNAHRAEDDCVILIECVLAL 276
+A H DD +L C+++L
Sbjct: 206 EAREEHYKADDASVL--CLMSL 225
>At4g33740.1 68417.m04790 expressed protein
Length = 227
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 195 DDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKREFTLTGLYKRLLDK 254
D+E++K E D ++ + G +K+D T +++ S +++ +K + T +
Sbjct: 146 DEEENKHEEDEIDEQDQSKNAGDTDKDDETLEEEKESGMSENDEKEKETNHADEIDMTVD 205
Query: 255 DAVNAHRAEDDCVILIECVLAL 276
+A H DD +L C+++L
Sbjct: 206 EAREEHYKADDASVL--CLMSL 225
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 145 KTTQKSLPLKMNTSKD--DSASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKE 202
KT ++ PL + S D D + P +DV ++ E++ F KD +D + ++ E
Sbjct: 60 KTVEEENPLDVPKSSDSIDDSEAAANPHVDVPSKKETEVEESVDDFGKDERLDLDDNEPE 119
Query: 203 NDLNQ 207
+ +
Sbjct: 120 YEAEE 124
>At1g80870.1 68414.m09489 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 692
Score = 28.3 bits (60), Expect = 6.6
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 156 NTSKDDSASELLWPELDVSTENWEEIDNLCASFSKDTCID--DEKSKKE--NDLNQQKCT 211
N DD + PEL VST ++ ++ S ++ D +EK KE ++ ++
Sbjct: 378 NPDWDDDKKVITTPELGVSTRTIDKAEHRDESGLNESRFDTLEEKFAKEEISERKNKRSK 437
Query: 212 NLKKGRKNKNDLTTQDQSLSIQNKSTK 238
N KK +N + +++ N K
Sbjct: 438 NKKKKHRNMEEWWKEEEHQEEMNNKKK 464
>At1g06320.1 68414.m00668 hypothetical protein
Length = 180
Score = 28.3 bits (60), Expect = 6.6
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Query: 153 LKMNTSKDDSASELLWPEL--DVSTENWEE--IDNLCASFSKDTCIDD-----EKSKKEN 203
LK T S+S L E+ D+ W+E +L S++T + +KS K
Sbjct: 53 LKQVTDSSPSSSSLTLDEVISDIEALKWQECCFTSLQIINSQETTPSEISKPKQKSNKRK 112
Query: 204 DLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKK 239
+K N G +N N + + ++NK T K
Sbjct: 113 KATMKKSLNTNFGDENDNTMMMMLPTKKMRNKKTTK 148
>At3g48710.1 68416.m05319 expressed protein putative protein -
Arabidopsis thaliana, EMBL:AL078465.1
Length = 462
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 189 SKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKNDLTTQDQSLSIQNKSTKKR-----EFT 243
S+DT +DEK K + L K K + +++S+ KS++K + T
Sbjct: 281 SEDTETEDEKDKAKEKTKSTDKKRLSKRTKKEKPAAEEEKSIKGSAKSSRKSFRQVDKST 340
Query: 244 LTGLYKRLLDKD 255
+ K+ +DKD
Sbjct: 341 TSSSKKQKVDKD 352
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 172 DVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQ-QKCTNLKKGRKNKNDLTTQDQSL 230
++S EN +DN+ + ++ K +E ++ +K L D T Q++
Sbjct: 773 ELSKENENLVDNVA---NMQNIAEESKDLREREVAYLKKIDELSTANGTLADNVTNLQNI 829
Query: 231 SIQNKSTKKREFTL 244
S +NK ++RE TL
Sbjct: 830 SEENKELRERETTL 843
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/80 (20%), Positives = 36/80 (45%)
Query: 162 SASELLWPELDVSTENWEEIDNLCASFSKDTCIDDEKSKKENDLNQQKCTNLKKGRKNKN 221
SAS+ L + + E + +N + +D CI+ +++K + ++ C LK
Sbjct: 729 SASKKLVDSMKMEAEASRKNENKLQTLLEDKCIEIDRAKSRIEGLERDCLKLKYAESEAA 788
Query: 222 DLTTQDQSLSIQNKSTKKRE 241
+ S+ ++ +S + E
Sbjct: 789 TVKELVSSMKMEVESARSNE 808
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,317,438
Number of Sequences: 28952
Number of extensions: 322491
Number of successful extensions: 1161
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 61
length of query: 300
length of database: 12,070,560
effective HSP length: 81
effective length of query: 219
effective length of database: 9,725,448
effective search space: 2129873112
effective search space used: 2129873112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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