Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000124-TA|BGIBMGA000124-PA|IPR002048|Calcium-binding
EF-hand
         (103 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    21   2.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    21   2.0  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   2.6  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    20   6.0  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    20   6.0  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    20   6.0  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    20   6.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    20   6.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    20   6.0  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory
          receptor candidate 45 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)

Query: 1  MVNFEYSKRDVKYM--FFKGC 19
          M  F YSK+D++ +  F+K C
Sbjct: 1  MCYFNYSKKDIRSLSFFYKIC 21


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory
          receptor candidate 8 protein.
          Length = 379

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)

Query: 1  MVNFEYSKRDVKYM--FFKGC 19
          M  F YSK+D++ +  F+K C
Sbjct: 1  MCYFNYSKKDIRSLSFFYKIC 21


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 76  DTEGRGYLTKERFAKLMM 93
           D E  GY+ K +F KL++
Sbjct: 103 DIEILGYVNKAKFGKLLI 120


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor
          subunit protein.
          Length = 141

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 3  NFEYSKRDVKYMFFKG 18
          +F Y+ RD++Y + +G
Sbjct: 5  SFGYTMRDIRYKWNEG 20


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
          peptide isoform C protein.
          Length = 136

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 74 YFDTEGRGYLTKERFAKL 91
          +FD + +G   K  FAKL
Sbjct: 48 FFDIQCKGVYDKSIFAKL 65


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
          peptide isoform B protein.
          Length = 120

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 74 YFDTEGRGYLTKERFAKL 91
          +FD + +G   K  FAKL
Sbjct: 48 FFDIQCKGVYDKSIFAKL 65


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
          peptide isoform A protein.
          Length = 140

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 74 YFDTEGRGYLTKERFAKL 91
          +FD + +G   K  FAKL
Sbjct: 48 FFDIQCKGVYDKSIFAKL 65


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory
          receptor candidate 23 protein.
          Length = 291

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 1  MVNFEYSKRDVKYMFFKGCC 20
          + N  Y+  + KY +   CC
Sbjct: 43 LTNLTYNNTNRKYYWLNVCC 62


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 3   NFEYSKRDVKYMFFKG 18
           +F Y+ RD++Y + +G
Sbjct: 187 SFGYTMRDIRYKWNEG 202


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,951
Number of Sequences: 317
Number of extensions: 871
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 103
length of database: 114,650
effective HSP length: 48
effective length of query: 55
effective length of database: 99,434
effective search space:  5468870
effective search space used:  5468870
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)