Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000124-TA|BGIBMGA000124-PA|IPR002048|Calcium-binding
EF-hand
         (103 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   7.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   7.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   7.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   7.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 3   NFEYSKRDVKYMFFKG 18
           +F Y+ RD++Y + +G
Sbjct: 158 SFGYTMRDIRYKWNEG 173


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 6/26 (23%), Positives = 16/26 (61%)

Query: 11  VKYMFFKGCCPTEAEIQEVILATENK 36
           ++Y+  +G    + +++ V+L  EN+
Sbjct: 710 IRYLHSQGLVHRDVKLKNVLLDIENR 735


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 6/26 (23%), Positives = 16/26 (61%)

Query: 11  VKYMFFKGCCPTEAEIQEVILATENK 36
           ++Y+  +G    + +++ V+L  EN+
Sbjct: 748 IRYLHSQGLVHRDVKLKNVLLDIENR 773


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)

Query: 3   NFEYSKRDVKYMFFKG 18
           +F Y+ RD++Y + +G
Sbjct: 97  SFGYTMRDIRYKWNEG 112


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,560
Number of Sequences: 429
Number of extensions: 969
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 103
length of database: 140,377
effective HSP length: 49
effective length of query: 54
effective length of database: 119,356
effective search space:  6445224
effective search space used:  6445224
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.6 bits)
S2: 38 (19.4 bits)