Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000124-TA|BGIBMGA000124-PA|IPR002048|Calcium-binding
EF-hand
(103 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical pr... 44 3e-05
X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein. 44 3e-05
AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin pr... 43 5e-05
AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin pr... 43 5e-05
U70851-8|AAB09131.1| 164|Caenorhabditis elegans Calmodulin rela... 42 8e-05
Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical pr... 42 1e-04
Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical pr... 40 2e-04
AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-li... 40 2e-04
Z70267-5|CAA94209.2| 143|Caenorhabditis elegans Hypothetical pr... 34 0.021
AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical... 31 0.20
U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arre... 30 0.26
D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C prot... 30 0.26
D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C prot... 30 0.26
U40423-5|AAA81454.2| 156|Caenorhabditis elegans Unidentified vi... 30 0.35
Z46793-3|CAA86772.1| 172|Caenorhabditis elegans Hypothetical pr... 29 0.61
Z34801-8|CAA84331.1| 172|Caenorhabditis elegans Hypothetical pr... 29 0.61
Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical pr... 29 0.80
AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C pr... 29 0.80
Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical pr... 28 1.1
AL132951-2|CAC44305.1| 561|Caenorhabditis elegans Hypothetical ... 28 1.1
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 27 2.4
Z82286-8|CAB05308.2| 487|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z81120-4|CAB03346.1| 142|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical pr... 27 3.2
L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical pr... 27 3.2
AC025715-2|AAK68447.2| 439|Caenorhabditis elegans Hypothetical ... 26 4.3
AF043693-3|AAB97537.1| 207|Caenorhabditis elegans Hypothetical ... 25 7.5
Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical pr... 25 9.9
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 25 9.9
>Z77653-1|CAB01124.1| 218|Caenorhabditis elegans Hypothetical
protein C13C12.1 protein.
Length = 218
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTE EI E+I + GN + P C VM++ +EM+ AFR FD +G
Sbjct: 114 PTEQEILEMI---NEVDIDGNGQIE--FPEFC-VMMKRMMKETDSEMIREAFRVFDKDGN 167
Query: 81 GYLTKERFAKLMMEEGESFTQ 101
G +T + F M+ G F++
Sbjct: 168 GVITAQEFRYFMVHMGMQFSE 188
>X04259-1|CAA27814.1| 161|Caenorhabditis elegans cal-1 protein.
Length = 161
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTE EI E+I + GN + P C VM++ +EM+ AFR FD +G
Sbjct: 57 PTEQEILEMI---NEVDIDGNGQIE--FPEFC-VMMKRMMKETDSEMIREAFRVFDKDGN 110
Query: 81 GYLTKERFAKLMMEEGESFTQ 101
G +T + F M+ G F++
Sbjct: 111 GVITAQEFRYFMVHMGMQFSE 131
>AJ132193-1|CAA10601.1| 149|Caenorhabditis elegans calmodulin
protein.
Length = 149
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTEAE+Q++I + + G + FL M + M + S E + AFR FD +G
Sbjct: 44 PTEAELQDMINEVD-ADGNGTIDFPEFLTMMARKMKD----TDSEEEIREAFRVFDKDGN 98
Query: 81 GYLTKERFAKLMMEEGESFT 100
G+++ +M GE T
Sbjct: 99 GFISAAELRHVMTNLGEKLT 118
>AF016429-2|AAB65364.1| 149|Caenorhabditis elegans Calmodulin
protein 1 protein.
Length = 149
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTEAE+Q++I + + G + FL M + M + S E + AFR FD +G
Sbjct: 44 PTEAELQDMINEVD-ADGNGTIDFPEFLTMMARKMKD----TDSEEEIREAFRVFDKDGN 98
Query: 81 GYLTKERFAKLMMEEGESFT 100
G+++ +M GE T
Sbjct: 99 GFISAAELRHVMTNLGEKLT 118
>U70851-8|AAB09131.1| 164|Caenorhabditis elegans Calmodulin related
genes protein 3 protein.
Length = 164
Score = 41.9 bits (94), Expect = 8e-05
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTE ++ E+I + + G V F M ++M E +EM+ AF+ FD +G
Sbjct: 62 PTEQQMMEIIHDVD-LDGNGQVEFPEFCVMMKRIMKE-----TDSEMIREAFKIFDRDGN 115
Query: 81 GYLTKERFAKLMMEEGESFTQV 102
G +T F M+ G F +V
Sbjct: 116 GVITANEFKLFMINMGMCFDEV 137
>Z82282-1|CAB05271.1| 182|Caenorhabditis elegans Hypothetical
protein T07G12.1 protein.
Length = 182
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 18 GCCPTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDT 77
G PTE E+ ++ + + G + F CK+M E E++ AF+ FD
Sbjct: 53 GLNPTEEELLNMVNEYD-VDGNGKIDFGEF----CKMMKEMN-KETDQELIRLAFKVFDK 106
Query: 78 EGRGYLTKERFAKLMMEEGESFTQ 101
+G GY+T + F M GE F++
Sbjct: 107 DGNGYITAQEFKHFMTTMGERFSE 130
>Z70034-1|CAA93852.2| 171|Caenorhabditis elegans Hypothetical
protein C18E9.1 protein.
Length = 171
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTE E+ +++ + + +G + F M ++ E+ +EM+ AFR FD +G
Sbjct: 68 PTEQELLDMVNEVDI-DGSGTIDFGEFCQMMKRMNKEN-----DSEMIREAFRVFDRDGN 121
Query: 81 GYLTKERFAKLMMEEGESFT 100
G++T + F M G+ F+
Sbjct: 122 GFITADEFRYFMTHMGDQFS 141
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 70 AAFRYFDTEGRGYLTKERFAKLMMEEGESFTQ 101
AAFR FD +G G ++ + M G++ T+
Sbjct: 39 AAFRLFDKDGNGSISSKELGVAMRSLGQNPTE 70
>AJ512489-1|CAD54672.1| 171|Caenorhabditis elegans calmodulin-like
protein protein.
Length = 171
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTE E+ +++ + + +G + F M ++ E+ +EM+ AFR FD +G
Sbjct: 68 PTEQELLDMVNEVDI-DGSGTIDFGEFCQMMKRMNKEN-----DSEMIREAFRVFDRDGN 121
Query: 81 GYLTKERFAKLMMEEGESFT 100
G++T + F M G+ F+
Sbjct: 122 GFITADEFRYFMTHMGDQFS 141
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 70 AAFRYFDTEGRGYLTKERFAKLMMEEGESFTQ 101
AAFR FD +G G ++ + M G++ T+
Sbjct: 39 AAFRLFDKDGNGSISSKELGVAMRSLGQNPTE 70
>Z70267-5|CAA94209.2| 143|Caenorhabditis elegans Hypothetical
protein K04C1.4 protein.
Length = 143
Score = 33.9 bits (74), Expect = 0.021
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 37 EATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRGYLTKERFAKLMMEEG 96
+ T + NFLP + V + P S E + +FD EG G++T +++ G
Sbjct: 54 DKTARISFENFLPVLSHV--RNNKIPYSMEDFIKGLSHFDKEGEGFITSAELRQVLTTMG 111
Query: 97 ESFT 100
+ +
Sbjct: 112 DKLS 115
>AC084159-17|AAK39364.1| 116|Caenorhabditis elegans Hypothetical
protein Y73B3A.12 protein.
Length = 116
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 37 EATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRGYLTKERFAKLMMEEG 96
+ G + FL M + M S E + AFR FD +G G+++ +M G
Sbjct: 8 DGNGTIDFPEFLTVMARKMKG----TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG 63
Query: 97 ESFT 100
E T
Sbjct: 64 EKLT 67
>U88165-10|AAK21395.1| 161|Caenorhabditis elegans Paralysed arrest
at two-fold protein10 protein.
Length = 161
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 68 LLAAFRYFDTEGRGYLTKERFAKLMMEEGESFT 100
L AFR FD EG GY+++ L+ E + T
Sbjct: 96 LREAFRLFDKEGNGYISRPTLKALLKEIADDLT 128
>D45896-1|BAA82524.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 68 LLAAFRYFDTEGRGYLTKERFAKLMMEEGESFT 100
L AFR FD EG GY+++ L+ E + T
Sbjct: 96 LREAFRLFDKEGNGYISRPTLKALLKEIADDLT 128
>D45895-1|BAA82523.1| 161|Caenorhabditis elegans troponin C
protein.
Length = 161
Score = 30.3 bits (65), Expect = 0.26
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 68 LLAAFRYFDTEGRGYLTKERFAKLMMEEGESFT 100
L AFR FD EG GY+++ L+ E + T
Sbjct: 96 LREAFRLFDKEGNGYISRPTLKALLKEIADDLT 128
>U40423-5|AAA81454.2| 156|Caenorhabditis elegans Unidentified
vitellogenin-linkedtranscript protein 2 protein.
Length = 156
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 68 LLAAFRYFDTEGRGYLTKERFAKLMMEEGESFTQ 101
L FR FD G GY+ +E +M + G+S T+
Sbjct: 23 LKGIFREFDLNGDGYIQREELRAVMQKMGQSPTE 56
>Z46793-3|CAA86772.1| 172|Caenorhabditis elegans Hypothetical
protein C56G7.1 protein.
Length = 172
Score = 29.1 bits (62), Expect = 0.61
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 25 EIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRGYLT 84
E+ E + + EA G P+ NF ++ + E E++ AF+ FD + G L
Sbjct: 62 EVTEQFIDSMINEAPGAQPI-NFTMFLT-LFGEKLTGTDPEEVIRNAFQCFDEDNSGKLN 119
Query: 85 KERFAKLMMEEGESFTQ 101
+E +L+ GE +++
Sbjct: 120 EEHLRELLTTMGERYSE 136
>Z34801-8|CAA84331.1| 172|Caenorhabditis elegans Hypothetical
protein C56G7.1 protein.
Length = 172
Score = 29.1 bits (62), Expect = 0.61
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 25 EIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRGYLT 84
E+ E + + EA G P+ NF ++ + E E++ AF+ FD + G L
Sbjct: 62 EVTEQFIDSMINEAPGAQPI-NFTMFLT-LFGEKLTGTDPEEVIRNAFQCFDEDNSGKLN 119
Query: 85 KERFAKLMMEEGESFTQ 101
+E +L+ GE +++
Sbjct: 120 EEHLRELLTTMGERYSE 136
>Z48585-7|CAA88482.1| 160|Caenorhabditis elegans Hypothetical
protein ZK673.7 protein.
Length = 160
Score = 28.7 bits (61), Expect = 0.80
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 23 EAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRGY 82
E +++++I + + +G + F + ++ + E L AFR +D EG GY
Sbjct: 53 ERDLKQLIKEFD-ADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGY 111
Query: 83 L 83
+
Sbjct: 112 I 112
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 72 FRYFDTEGRGYLTKERFAKLMMEEGESFTQ 101
F FD EG+GY+ + +++ G++F +
Sbjct: 24 FNMFDKEGKGYIRATQVGQILRTMGQAFEE 53
>AB079299-1|BAB84566.1| 160|Caenorhabditis elegans troponin C
protein.
Length = 160
Score = 28.7 bits (61), Expect = 0.80
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 23 EAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRGY 82
E +++++I + + +G + F + ++ + E L AFR +D EG GY
Sbjct: 53 ERDLKQLIKEFD-ADGSGEIEFEEFAAMVANFVVNNENDEGLEEELREAFRLYDKEGNGY 111
Query: 83 L 83
+
Sbjct: 112 I 112
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 72 FRYFDTEGRGYLTKERFAKLMMEEGESFTQ 101
F FD EG+GY+ + +++ G++F +
Sbjct: 24 FNMFDKEGKGYIRATQVGQILRTMGQAFEE 53
>Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical
protein C07A9.5 protein.
Length = 358
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 71 AFRYFDTEGRGYLTKERFAKLMMEEGESFT 100
AF YFD E G+L E F + +G +F+
Sbjct: 237 AFDYFDQEKNGWLDYEHFELCLKSQGYNFS 266
>AL132951-2|CAC44305.1| 561|Caenorhabditis elegans Hypothetical
protein Y67H2A.4a protein.
Length = 561
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 71 AFRYFDTEGRGYLTKERFAKL 91
AF+ FD +G G L KE F K+
Sbjct: 306 AFKIFDVDGNGALDKEEFTKV 326
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 23 EAEIQEVI-LATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRG 81
E E Q ++ + N++ G V L ++ +M E+ S+E + AFR E R
Sbjct: 2322 EPEFQRILDIVDPNRD--GYVTLQEYMAFMISKETENI---QSSEEIEMAFRALSKEFRP 2376
Query: 82 YLT-KERFAKLMMEEGE 97
Y+T +E +A L E+ E
Sbjct: 2377 YVTAEELYANLTPEQAE 2393
>Z82286-8|CAB05308.2| 487|Caenorhabditis elegans Hypothetical
protein W02A2.5 protein.
Length = 487
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 6 YSKRDVKYMFFKGCCPTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMI 56
Y K D + +F+ P +Q V +A + E G+V F P+ +V +
Sbjct: 97 YQKTDTRNEYFEYSYPV-TNVQPVFVARKKTETLGSVLWNAFKPFSVEVWL 146
>Z81120-4|CAB03346.1| 142|Caenorhabditis elegans Hypothetical
protein T12D8.6 protein.
Length = 142
Score = 26.6 bits (56), Expect = 3.2
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 21 PTEAEIQEVILATENKEATGNVPLTNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGR 80
PTEAEI + + + ++EA + +F+P V + + E + +FD EG
Sbjct: 38 PTEAEIHKCV-GSFDREA--RLSFEDFVPIFQSVSKNREKH--TVEEFVEGLSHFDKEGN 92
Query: 81 GYLTKERFAKLMMEEGE 97
G + L+ GE
Sbjct: 93 GMINVAELRHLLTTLGE 109
>Z68319-4|CAA92702.1| 884|Caenorhabditis elegans Hypothetical
protein T23G7.4 protein.
Length = 884
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 18 GCCPTEAEIQEVILATENKEATGNVPLTNFLP 49
G P++ + +V+L+ + + +GN+ + NF P
Sbjct: 138 GLLPSQKRMDQVLLSRDFPDCSGNLRMENFSP 169
>L14433-6|AAA27974.2| 2107|Caenorhabditis elegans Hypothetical protein
C50C3.2 protein.
Length = 2107
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 71 AFRYFDTEGRGYLTKERFAKLMMEEGESFT 100
AF YFD E G+L + F + +G +F+
Sbjct: 1983 AFDYFDRERNGWLDYKHFELCLKSQGYNFS 2012
>AC025715-2|AAK68447.2| 439|Caenorhabditis elegans Hypothetical
protein Y38F2AR.6 protein.
Length = 439
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 45 TNFLPYMCKVMIEHRFYPASAEMLLAAFRYFDTEGRG 81
++FLPY+ KV Y +++L R TEG G
Sbjct: 104 SSFLPYVPKVWSVQNTYRIPTDVILNTIRTGGTEGLG 140
>AF043693-3|AAB97537.1| 207|Caenorhabditis elegans Hypothetical
protein C34B2.5 protein.
Length = 207
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 3 NFEYSKRDVKYM-FFKGCCPTEAEIQEVILA 32
N E+ K + KY C PT E+Q ++L+
Sbjct: 31 NGEFEKANEKYQEAIASCPPTSTEVQSILLS 61
>Z70265-2|CAA94200.1| 388|Caenorhabditis elegans Hypothetical
protein C05A9.3 protein.
Length = 388
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 35 NKEATGNVPLTNFLP 49
N ATGN+PLT+ +P
Sbjct: 214 NCTATGNIPLTSIIP 228
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 5 EYSKRDVKYMFFKGCCPTEAEI 26
+Y R ++ FF GCCP E+
Sbjct: 396 QYHCRANEHCFFGGCCPKTIEL 417
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.137 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,377
Number of Sequences: 27539
Number of extensions: 86847
Number of successful extensions: 235
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 36
length of query: 103
length of database: 12,573,161
effective HSP length: 71
effective length of query: 32
effective length of database: 10,617,892
effective search space: 339772544
effective search space used: 339772544
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)
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