Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000123-TA|BGIBMGA000123-PA|IPR008580|Protein of unknown
function DUF862, eukaryotic
         (118 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    49   2e-07
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   4.1  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    23   9.6  

>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 48.8 bits (111), Expect = 2e-07
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 25  VVLNVYDMYW---TNWYTAGAGLGVFHSGVQVHGSEWAYGGHPY-AFTGVFEISPRDERE 80
           V +NVYD+      N      GLG++H+G+ + G E+A+G H     TGVF   PR    
Sbjct: 3   VYINVYDLMPDSPVNKLAWTLGLGIYHTGLVLEGKEYAFGAHEIPGSTGVFATMPRPPL- 61

Query: 81  LGEQFRFRQSVHIGYTDFSEEEVRRLVAELGKQFRG 116
             E  R+R S+ +      + +V R++  L ++F G
Sbjct: 62  --EGCRWRCSIALPNCTLPKPDVDRILIRLSQEFTG 95


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 23  ATVVLNVYDMYWTNWY 38
           +T  +N +D+Y TNW+
Sbjct: 106 STACINFFDIYQTNWH 121


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 87  FRQSVHIGYT-DFSEEEVRRLVAELGKQFRGDR 118
           F Q   +G + D SE E+R+   +L KQ+  D+
Sbjct: 6   FSQKQILGVSKDASESEIRKAYRQLTKQWHPDK 38


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,817
Number of Sequences: 5004
Number of extensions: 21512
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 3
length of query: 118
length of database: 2,362,478
effective HSP length: 65
effective length of query: 53
effective length of database: 2,037,218
effective search space: 107972554
effective search space used: 107972554
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)