GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000123-TA|BGIBMGA000123-PA|IPR008580|Protein of unknown
function DUF862, eukaryotic
         (118 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061130-1|AAL28678.1|  205|Drosophila melanogaster LD11371p pro...   162   1e-40
AE013599-1174|AAF58750.1|  205|Drosophila melanogaster CG7222-PA...   162   1e-40
BT023599-1|AAY84999.2|  183|Drosophila melanogaster IP06716p pro...   101   2e-22
AE014298-2866|AAF48967.1|  183|Drosophila melanogaster CG12231-P...   101   2e-22
U29529-1|AAB49330.1|  186|Drosophila melanogaster guf protein.         28   2.7  
L05109-1|AAA70421.1|  632|Drosophila melanogaster poly(A)-bindin...    28   2.7  
AF038597-1|AAC97538.1|  254|Drosophila melanogaster ornithine de...    28   2.7  
AE013599-1406|AAF58570.2|  248|Drosophila melanogaster CG16747-P...    28   2.7  
AE013599-1405|AAF58567.2|  270|Drosophila melanogaster CG16747-P...    28   2.7  
AE013599-1404|AAF58569.2|  254|Drosophila melanogaster CG16747-P...    28   2.7  
AE014296-3632|AAF51791.1|  122|Drosophila melanogaster CG14563-P...    27   8.3  

>AY061130-1|AAL28678.1|  205|Drosophila melanogaster LD11371p
           protein.
          Length = 205

 Score =  162 bits (393), Expect = 1e-40
 Identities = 75/121 (61%), Positives = 90/121 (74%), Gaps = 4/121 (3%)

Query: 2   FPSCMSLLSRRSDSQHPRPG----QATVVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSE 57
           FPSC+S+      ++   P     +  V+LNVYDMYW N YT   GLGVFHSGV+  G+E
Sbjct: 12  FPSCLSVPKDEIGNEELLPSNMGTREPVILNVYDMYWINEYTTSIGLGVFHSGVEAFGTE 71

Query: 58  WAYGGHPYAFTGVFEISPRDERELGEQFRFRQSVHIGYTDFSEEEVRRLVAELGKQFRGD 117
           +AYGGHP+ FTGVFEISPRD  ELG+QF+FRQS+ IG TDF+ EEVRR+V ELG QFRGD
Sbjct: 72  FAYGGHPFPFTGVFEISPRDHDELGDQFQFRQSIQIGCTDFTYEEVRRIVEELGNQFRGD 131

Query: 118 R 118
           R
Sbjct: 132 R 132


>AE013599-1174|AAF58750.1|  205|Drosophila melanogaster CG7222-PA
           protein.
          Length = 205

 Score =  162 bits (393), Expect = 1e-40
 Identities = 75/121 (61%), Positives = 90/121 (74%), Gaps = 4/121 (3%)

Query: 2   FPSCMSLLSRRSDSQHPRPG----QATVVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSE 57
           FPSC+S+      ++   P     +  V+LNVYDMYW N YT   GLGVFHSGV+  G+E
Sbjct: 12  FPSCLSVPKDEIGNEELLPSNMGTREPVILNVYDMYWINEYTTSIGLGVFHSGVEAFGTE 71

Query: 58  WAYGGHPYAFTGVFEISPRDERELGEQFRFRQSVHIGYTDFSEEEVRRLVAELGKQFRGD 117
           +AYGGHP+ FTGVFEISPRD  ELG+QF+FRQS+ IG TDF+ EEVRR+V ELG QFRGD
Sbjct: 72  FAYGGHPFPFTGVFEISPRDHDELGDQFQFRQSIQIGCTDFTYEEVRRIVEELGNQFRGD 131

Query: 118 R 118
           R
Sbjct: 132 R 132


>BT023599-1|AAY84999.2|  183|Drosophila melanogaster IP06716p
           protein.
          Length = 183

 Score =  101 bits (242), Expect = 2e-22
 Identities = 48/93 (51%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 25  VVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISP-RDERELGE 83
           V+LN+YD+  +N YT   GLGVFHSGVQ++G E+A+     + +G+FEI P   + ELGE
Sbjct: 29  VMLNIYDLSTSNNYTFPLGLGVFHSGVQLYGREYAFLALNLSISGIFEIHPCNGQEELGE 88

Query: 84  QFRFRQSVHIGYTDFSEEEVRRLVAELGKQFRG 116
            FRFR+S+ +GYTDF+  EV+R++  LG +FRG
Sbjct: 89  HFRFRKSILLGYTDFTCAEVKRVINLLGFEFRG 121


>AE014298-2866|AAF48967.1|  183|Drosophila melanogaster CG12231-PA
           protein.
          Length = 183

 Score =  101 bits (242), Expect = 2e-22
 Identities = 48/93 (51%), Positives = 68/93 (73%), Gaps = 1/93 (1%)

Query: 25  VVLNVYDMYWTNWYTAGAGLGVFHSGVQVHGSEWAYGGHPYAFTGVFEISP-RDERELGE 83
           V+LN+YD+  +N YT   GLGVFHSGVQ++G E+A+     + +G+FEI P   + ELGE
Sbjct: 29  VMLNIYDLSTSNNYTFPLGLGVFHSGVQLYGREYAFLALNLSISGIFEIHPCNGQEELGE 88

Query: 84  QFRFRQSVHIGYTDFSEEEVRRLVAELGKQFRG 116
            FRFR+S+ +GYTDF+  EV+R++  LG +FRG
Sbjct: 89  HFRFRKSILLGYTDFTCAEVKRVINLLGFEFRG 121


>U29529-1|AAB49330.1|  186|Drosophila melanogaster guf protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 5  CMSLLSRRSDSQHPRPGQATVVLNVYDMYWTNWYT 39
          C  +L  R   QH +P Q T+ L+V +  +TNW T
Sbjct: 60 CQEVL--RQILQHDQPVQITIKLHVTEDQYTNWNT 92


>L05109-1|AAA70421.1|  632|Drosophila melanogaster poly(A)-binding
           protein protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 75  PRDERELGEQFRFRQSVHI-GYT-DFSEEEVRRLVAELGK 112
           PR E+ELGE+ +   +V++  +T DF +E+++      GK
Sbjct: 167 PRKEQELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGK 206


>AF038597-1|AAC97538.1|  254|Drosophila melanogaster ornithine
           decarboxylase antizyme protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 5   CMSLLSRRSDSQHPRPGQATVVLNVYDMYWTNWYT 39
           C  +L  R   QH +P Q T+ L+V +  +TNW T
Sbjct: 128 CQEVL--RQILQHDQPVQITIKLHVTEDQYTNWNT 160


>AE013599-1406|AAF58570.2|  248|Drosophila melanogaster CG16747-PB,
           isoform B protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 5   CMSLLSRRSDSQHPRPGQATVVLNVYDMYWTNWYT 39
           C  +L  R   QH +P Q T+ L+V +  +TNW T
Sbjct: 122 CQEVL--RQILQHDQPVQITIKLHVTEDQYTNWNT 154


>AE013599-1405|AAF58567.2|  270|Drosophila melanogaster CG16747-PC,
           isoform C protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 5   CMSLLSRRSDSQHPRPGQATVVLNVYDMYWTNWYT 39
           C  +L  R   QH +P Q T+ L+V +  +TNW T
Sbjct: 144 CQEVL--RQILQHDQPVQITIKLHVTEDQYTNWNT 176


>AE013599-1404|AAF58569.2|  254|Drosophila melanogaster CG16747-PA,
           isoform A protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 5   CMSLLSRRSDSQHPRPGQATVVLNVYDMYWTNWYT 39
           C  +L  R   QH +P Q T+ L+V +  +TNW T
Sbjct: 128 CQEVL--RQILQHDQPVQITIKLHVTEDQYTNWNT 160


>AE014296-3632|AAF51791.1|  122|Drosophila melanogaster CG14563-PA
          protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 40 AGAGLGVFHSGVQVHGSEWAYGGHPY 65
          AG+G G  + G  ++G  ++YGG+PY
Sbjct: 43 AGSGYGNIY-GSGMYGYPYSYGGYPY 67


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,200,140
Number of Sequences: 52641
Number of extensions: 252017
Number of successful extensions: 519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 24,830,863
effective HSP length: 76
effective length of query: 42
effective length of database: 20,830,147
effective search space: 874866174
effective search space used: 874866174
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)