GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000123-TA|BGIBMGA000123-PA|IPR008580|Protein of unknown
function DUF862, eukaryotic
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   0.93 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   8.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   8.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   8.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    20   8.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 0.93
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 20  PGQATVVLNVYDMYWTNW 37
           PG  + V   Y +YW  W
Sbjct: 557 PGSNSAVFTNYKLYWRYW 574


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
          channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 8  LLSRRSDSQHPRPGQATVVLNV 29
          LLS R D +   P Q T+ +NV
Sbjct: 69 LLSTRYDKRLLPPVQGTLTVNV 90


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
          channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 8  LLSRRSDSQHPRPGQATVVLNV 29
          LLS R D +   P Q T+ +NV
Sbjct: 69 LLSTRYDKRLLPPVQGTLTVNV 90


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
          channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 8  LLSRRSDSQHPRPGQATVVLNV 29
          LLS R D +   P Q T+ +NV
Sbjct: 69 LLSTRYDKRLLPPVQGTLTVNV 90


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 19.8 bits (39), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 29  VYDMYWTNWYTAGAGLGVFHSGVQV 53
           V+D+ +   YT   G GV+  G  V
Sbjct: 370 VHDVEFPGXYTMVIGSGVYRIGSSV 394


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.442 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,768
Number of Sequences: 429
Number of extensions: 1371
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)