Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000122-TA|BGIBMGA000122-PA|undefined
(216 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 33 0.15
At3g27350.1 68416.m03420 expressed protein 33 0.15
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 32 0.26
At4g31680.1 68417.m04498 transcriptional factor B3 family protei... 31 0.45
At1g49560.1 68414.m05557 myb family transcription factor contain... 31 0.60
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 31 0.60
At3g66652.1 68416.m00776 fip1 motif-containing protein contains ... 30 1.4
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 29 1.8
At5g40450.1 68418.m04905 expressed protein 29 1.8
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r... 29 1.8
At5g63300.1 68418.m07944 ribosomal protein S21 family protein 29 2.4
At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family... 29 2.4
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 2.4
At4g19000.1 68417.m02798 IWS1 C-terminus family protein contains... 29 3.2
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family... 28 4.2
At5g38800.1 68418.m04691 bZIP transcription factor family protei... 28 4.2
At1g44478.1 68414.m05116 hypothetical protein 28 4.2
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 28 4.2
At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein si... 28 5.6
At5g33393.1 68418.m03983 hypothetical protein 28 5.6
At5g27330.1 68418.m03263 expressed protein 28 5.6
At5g10410.1 68418.m01207 epsin N-terminal homology (ENTH) domain... 28 5.6
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.6
At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related... 27 7.4
At3g59800.1 68416.m06673 expressed protein 27 7.4
At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2) id... 27 7.4
At3g52240.1 68416.m05741 expressed protein 27 9.7
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 27 9.7
At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger) fa... 27 9.7
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot... 27 9.7
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 800
Score = 33.1 bits (72), Expect = 0.15
Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 9/168 (5%)
Query: 23 DKHESEGVDPEESLRQFQLELCWC-IQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPI 81
+K E EG + E+ +++ C +++ E+ N K+G+E+ +E K V K++
Sbjct: 468 EKQEEEGKEEEQEKVEYRDHHSTCNVEETEKQENPKQGDEEMEREEGKEEKVEKHDEYND 527
Query: 82 IRKRQLMRTHFGDYRAKMASEEKKLSKMTSKIKISEVQEKPKATFFRKSVFQTTGDESFR 141
++ D A EK+ S+ K E + T D+
Sbjct: 528 AADQEAYINLSDDEDNDTAPTEKE-----SQQKKEETNVLKEENVEEHDEHDETEDQEA- 581
Query: 142 FNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNTEE 189
+ + SD +NG T E + T V ++N++ + + TE+
Sbjct: 582 --YVILSDDEDNGTAPTEKESQPQKEETTEVPKEENVEEHDEHDETED 627
>At3g27350.1 68416.m03420 expressed protein
Length = 274
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 56 EKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKMTSKIKI 115
EKK E+ L+E W V K + + + + R + R + +E L++ S+ +
Sbjct: 160 EKKVEEELLKEDWSVGEKEKQHRKSVTKNRPVFRLSLEKTIPPKSLDEISLTEKRSERPM 219
Query: 116 SEVQEKP 122
++V+EKP
Sbjct: 220 TQVEEKP 226
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 32.3 bits (70), Expect = 0.26
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 83 RKRQLMRTHFGDYRAKMASEEKKL---SKMTSKIKISEVQEKPKATFFRKSVFQTTGDES 139
R +L+ T D++ K+ +++ S+ T K+ + E + + K KSV GD+
Sbjct: 1170 RIEELVETEISDHKEKVKKKDEDYILRSQDTGKVDLGERERRSKQRKIHKSVEDEIGDQE 1229
Query: 140 FRFNFDLTS--DQIENGN---ISTVTEENNKIGNTESVIADDNIQGNSKD 184
+ + + ENG+ + T+ EE+ K + N + N +D
Sbjct: 1230 DEDAEEAAAVVSRNENGSSRKVQTIEEESEKHKEQNKIPETSNPEVNEED 1279
>At4g31680.1 68417.m04498 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 [Brassica
oleracea var. botrytis] GI:3170424; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 462
Score = 31.5 bits (68), Expect = 0.45
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 3 KPTRLHNK--GKSTSLQKP--CKIDKH----ESEGVDPEESLRQFQLELCWCIQQLERTL 54
+P+R NK GK +LQK C + H + VD S+R+FQ EL Q+LE +L
Sbjct: 396 EPSRASNKSSGKQGNLQKTQACSVTDHVAKVKESVVDTLTSIRRFQAELETMEQKLEDSL 455
Query: 55 NE 56
E
Sbjct: 456 QE 457
>At1g49560.1 68414.m05557 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 333
Score = 31.1 bits (67), Expect = 0.60
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 7 LHNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQE 66
+ +G S ++ K+D+H + + + L QLEL +Q L + K E
Sbjct: 13 IFGRGVSMNVVAVEKVDEHVKKLEEEKRKLESCQLELPLSLQILNDAILYLKDKRCSEME 72
Query: 67 TWKVLTVLKNNNQPI--------IRKRQLMR-THFGDYRAKMASEEKKLSKMTSKIKISE 117
T +L + N+PI +++ +LMR F ++A + SK+ SK++I
Sbjct: 73 TQPLLKDFISVNKPIQGERGIELLKREELMREKKFQQWKA----NDDHTSKIKSKLEIKR 128
Query: 118 VQEK 121
+EK
Sbjct: 129 NEEK 132
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 31.1 bits (67), Expect = 0.60
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 120 EKPKATFFRKSVFQTTGD--ESFRFNFDLTSDQI-ENGNISTVTEENNKIGNTESVIADD 176
EK K RK++ Q TGD + F+ + +Q E G S + +N ++G T S++
Sbjct: 625 EKSKNAPIRKTMMQQTGDVVKEFKMRLNRVQNQFQEQGLNSMLYYKNREMGETISILPAS 684
Query: 177 NIQG 180
I G
Sbjct: 685 AISG 688
>At3g66652.1 68416.m00776 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 980
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 3 KPTRLHNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEK 62
KP +L K + ++Q DK E E ++ + + + ++++E+ KG +
Sbjct: 888 KPRKLMGKSEEKAMQNRDINDKEEGEIIEEVKGVEIDNERIQESLKKMEKRRERFKGTKL 947
Query: 63 QLQETWKVLTVLK-----NNNQPIIRKRQ 86
++ T+K T L+ N Q +RKR+
Sbjct: 948 AVEATFKSQTELRAKADVTNQQRPVRKRR 976
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 107 SKMTSKIKISEVQEKPKATFFR-KSVFQTTGDESFRFNFDLTS 148
S +T +K+ + +T F S+F + ES RFNF L+S
Sbjct: 4 SVLTPSLKLLAMTNSSSSTLFCIPSIFNISSSESHRFNFSLSS 46
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 29.5 bits (63), Expect = 1.8
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 100 ASEEKKLSKMTSKIKISEVQEKPKATFFRKSVFQTTGDESFRFNFDLTSDQIENGNISTV 159
A E+KK + + I +VQ++PK F ++ + ++ + N DLT Q + G V
Sbjct: 2578 AQEDKKEETVDALITNVQVQDQPKEDFEAAAIEKEISEQEHKLN-DLTDVQEDIGTYVKV 2636
Query: 160 TEENNKI-GNTESVIADDNIQGNSKDHNTE 188
+++I G+ +A + +S + E
Sbjct: 2637 QVPDDEIKGDGHDSVAAQKEETSSIEEKRE 2666
>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
cerevisiae,PID:g555939
Length = 724
Score = 29.5 bits (63), Expect = 1.8
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 70 VLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKMTSKIKISEVQEKPKATFFRK 129
+L + P++ + + + + ++ K I ++ P TF
Sbjct: 334 LLNTFEAEENPVVEPTATAAVSSDELISTSEATRHSVDEIAQKPIIDTSEKNPMETFVEP 393
Query: 130 SVFQTTGDESFRFNFDLTSDQIENG-NISTVTEENNKIGNTESVIADDNIQGNSKDHNTE 188
++ DES +TSD +G N+++ TE+ + +T I D N+ D E
Sbjct: 394 EAVHSSVDESTEKLVVVTSDVENDGENVASTTEDEITVRDT---ITDSGSISNNDDTKVE 450
Query: 189 E 189
+
Sbjct: 451 D 451
>At5g63300.1 68418.m07944 ribosomal protein S21 family protein
Length = 217
Score = 29.1 bits (62), Expect = 2.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 103 EKKLSKMTSKIKISEVQEKPKATFFR--KSVFQTTGDESFRFNFDLTSDQIENGN 155
E L K T K K + + + ++ FF S F+ T E +FD T DQ N N
Sbjct: 119 ESSLEKKTRKTKEAAKKYRKRSDFFFTFSSFFRKTLGEVESIDFDFTGDQTLNQN 173
>At3g09360.1 68416.m01110 transcription factor IIB (TFIIB) family
protein contains Pfam domain, PF00382: Transcription
factor TFIIB repeat
Length = 600
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 128 RKSVFQTTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNT 187
++S +T ++ N ++ S++ ENG EE+ + GN ES + Q K +
Sbjct: 527 KRSKTETDIEKKKEENKEMKSNEHENGENEDEDEEDEEEGNVESYDMKTDFQNGEKFYEE 586
Query: 188 EE 189
+E
Sbjct: 587 DE 588
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/112 (19%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 8 HNKGKSTSLQKPCKIDKHESEGVDPEESLRQFQLELCWC-IQQLERTLNEKKGNEKQLQE 66
HN K +++ + + ESE + +Q +L+LC +++L + K +L+E
Sbjct: 1308 HNFEKCQEMREVAQKARMESENFENLLKTKQTELDLCMKEMEKLRMETDLHKKRVDELRE 1367
Query: 67 TWKVLTV-----LKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKMTSKI 113
T++ + + LK+ + + K + H D + + ++ K+S + ++
Sbjct: 1368 TYRNIDIADYNRLKDEVRQLEEKLKAKDAHAEDCKKVLLEKQNKISLLEKEL 1419
>At4g19000.1 68417.m02798 IWS1 C-terminus family protein contains
Pfam profile PF05909: IWS1 C-terminus
Length = 406
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 50 LERTLNEKKGNEKQLQETWKVLTVLKNN--NQPIIRKRQLMRTHFGDYRAKMASEEKKLS 107
LE+T KK N +++QE W +T N+ ++ K + + K+ S KK S
Sbjct: 75 LEKTKKNKKQNSEEVQEMWDSITNNTNSQYGDKVVVKPPKKKDEDAEEIKKLFSLRKKKS 134
Query: 108 K 108
K
Sbjct: 135 K 135
>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
protein Common family members: At5g26070, At5g19800,
At1g72790 [Arabidopsis thaliana]
Length = 575
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 128 RKSVFQTTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTE 170
R+ VF+ TGD FRF D D+ + + S+ + N + TE
Sbjct: 180 RQGVFRETGDRRFRFYDDFEIDKYRSQDSSSYQQFQN-LSKTE 221
>At5g38800.1 68418.m04691 bZIP transcription factor family protein
similar to bZIP transcription factor GI:1769891 from
[Arabidopsis thaliana]; contains PFAM profile: bZIP
transcription factor PF00170
Length = 165
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/82 (21%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 47 IQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKL 106
I E + ++Q+ E W + L++ N ++RK + + + K+ E +L
Sbjct: 78 ISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNCVL----ESQEKVIEENVQL 133
Query: 107 SKMTSKIK--ISEVQEKPKATF 126
+ T+++K IS++Q + ++ F
Sbjct: 134 KEETTELKQMISDMQLQNQSPF 155
>At1g44478.1 68414.m05116 hypothetical protein
Length = 193
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 48 QQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTH 91
++LER N+K EK+LQ K + + N + K++ H
Sbjct: 140 RELERVFNDKLSKEKKLQREEKEIVRMMNTEEKYAAKKREWGLH 183
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 26 ESEGVDPEESLRQFQL-ELCWCIQQLERTLNEKKGN----EKQLQETWKVLTVLKNNNQP 80
E E + E S+++ +L E I LE TL + + N KQ+++ + T LKN +
Sbjct: 970 EQEMLQKEASIQKNKLTEAHSTINSLEETLAQTESNMDSLSKQIEDDKVLTTSLKNELEK 1029
Query: 81 IIRKRQLMRTHFGDYRAKMASEEKKLSKMTSKI 113
+ + + R + + S E+ L K + +
Sbjct: 1030 LKIEAEFERNKMAEASLTIVSHEEALMKAENSL 1062
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 42 ELCWCIQQLERTLNEKKGN----EKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRA 97
EL I LE+ L N + E+W ++ L+ ++ + + ++ +
Sbjct: 1521 ELSKLISGLEKLLGILASNNPVVDPNFSESWTLVQALEKKITSLLLESESSKSRAQELGL 1580
Query: 98 KMASEEKKLSKMTSKIKISEVQEKPKA 124
K+A EK + K++ ++K E + + KA
Sbjct: 1581 KLAGSEKLVDKLSLRVKEFEEKLQTKA 1607
>At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 549
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 117 EVQEKPKATFFRKSVFQTTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTESVIADD 176
E+ E+ + K Q++ E + +++E+ + +E+ K+ N+ES++ D+
Sbjct: 165 EIHERYENVCDSKETAQSSNTEDSQVLESHDIEEVESSTRTITVDESEKL-NSESIMQDE 223
Query: 177 NIQGNSKDHNTEEA 190
N + D TE+A
Sbjct: 224 NCE--KSDVTTEDA 235
>At5g33393.1 68418.m03983 hypothetical protein
Length = 435
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 60 NEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKMTSKIKISE 117
++ + Q TW+ L++L+ ++ K L RT K E KKL + T K+++ +
Sbjct: 65 SDVEKQCTWQKLSLLEARDELKALKESL-RTPINQQAIKEEEETKKLEEETKKLEVEK 121
>At5g27330.1 68418.m03263 expressed protein
Length = 628
Score = 27.9 bits (59), Expect = 5.6
Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 6/123 (4%)
Query: 50 LERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKM 109
+ER E+ + L+E + + VLK + +++++ + D R + EKKL M
Sbjct: 230 IERGNRERSELVESLEEKVREIDVLKREIEGVVKEKMEVEMVRRDQREMIVELEKKLGDM 289
Query: 110 TSKIK-ISEVQE--KPKATFFRKSVFQTTGDESFR---FNFDLTSDQIENGNISTVTEEN 163
++ +++ +E + + KS+ + T + R N + ++ + + EN
Sbjct: 290 NEIVESLTKEREGLRGQVVGLEKSLDEVTEEAKARAEQINELVKEKTVKESELEGLMVEN 349
Query: 164 NKI 166
N I
Sbjct: 350 NSI 352
>At5g10410.1 68418.m01207 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to clathrin
assembly protein AP180 (GI:6492344) [Xenopus laevis]
Length = 338
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 45 WCIQQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPI 81
WC+ ++ + EKK N++ ++ V T +K++ + I
Sbjct: 284 WCLVEMLKAETEKKNNKQMIELAGLVQTTVKDDEEMI 320
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 27.9 bits (59), Expect = 5.6
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 55 NEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMR 89
+++ N K L+E WK ++ N++ ++ + ++MR
Sbjct: 375 SDQPANAKLLEEIWKTGVRVRENSEGLVERGEIMR 409
>At5g14280.1 68418.m01670 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 572
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 49 QLERTLNEKKGNEKQLQETWKVLTV--LKNNNQPIIRKRQLMRTHFGDYRAKMAS 101
QLE+ +N G ++L WK L V LK N + +L DY + +S
Sbjct: 253 QLEKLMNLGTGKRRELSNEWKALCVEELKLNINKLRFSAKLAEAANDDYSSSSSS 307
>At3g59800.1 68416.m06673 expressed protein
Length = 186
Score = 27.5 bits (58), Expect = 7.4
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 17 QKPCKIDKHESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQETWKVLTVLKN 76
QK ++ K E E D ++ +R+++ +L ER+L KG ++ K
Sbjct: 62 QKEEELKKGELEA-DTDKLMREYRAQL-----DAERSLKLSKGRNYSSDKSRK-----DK 110
Query: 77 NNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKMTSKIKISEVQEKPKAT 125
++ +K+ R H+ + +S+E + + S K S+ ++K K++
Sbjct: 111 KDRDSKKKKSKKRKHYSSSESSSSSDEDESRRSRSSSKRSKKEKKHKSS 159
>At1g04860.1 68414.m00482 ubiquitin-specific protease 2 (UBP2)
identical to GI:11993463
Length = 961
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 9/58 (15%)
Query: 133 QTTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQGNSK--DHNTE 188
+T+GDE+ N D+ D I+N +T E N+I + +++A+ ++ + + NTE
Sbjct: 497 ETSGDET---NLDMQEDGIDN----VITAEVNQIVPSPNIVANSSVSSGDQTLEGNTE 547
>At3g52240.1 68416.m05741 expressed protein
Length = 680
Score = 27.1 bits (57), Expect = 9.7
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 56 EKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLSKMTSK-IK 114
++ GN + QE +L N + R + GD S L K S I
Sbjct: 172 KRDGNPVEFQENGVRTEMLPQKNDQVSRTVVDVAVVKGDDSLNKLSNSNGLEKGNSTDIN 231
Query: 115 ISEVQEKPK---ATFFRKSVFQTTGDESFRFNFDLTSDQIENGNISTVTEENN 164
+ E +F Q +++FR N D + GN S VT+E+N
Sbjct: 232 LERALENRAQVIGSFEEMEETQREWEKNFRENKSSALDLCDVGNHSDVTDESN 284
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/74 (21%), Positives = 35/74 (47%)
Query: 48 QQLERTLNEKKGNEKQLQETWKVLTVLKNNNQPIIRKRQLMRTHFGDYRAKMASEEKKLS 107
+++E EK G EK ++E + LK + ++ ++ M + + + E+KL
Sbjct: 229 EEIEGVKKEKIGLEKIMEEKKNEIDGLKREIKVLLSEKNEMEIVKIEQKGVIEELERKLD 288
Query: 108 KMTSKIKISEVQEK 121
K+ ++ +EK
Sbjct: 289 KLNETVRSLTKEEK 302
>At1g67180.1 68414.m07642 zinc finger (C3HC4-type RING finger)
family protein / BRCT domain-containing protein contains
Pfam domains PF00533: BRCA1 C Terminus (BRCT) domain and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 453
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 128 RKSVFQTTGDESFRFNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQG 180
RK + S+R DL SD+ + N ++EN AD+N++G
Sbjct: 174 RKGKKRVVKQRSYRNLIDLESDEESDNNHHDNSDENQNETQDHREPADENVRG 226
>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487; contains
prenyl group binding site (CAAX box) Prosite:PS00294
Length = 769
Score = 27.1 bits (57), Expect = 9.7
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 9 NKGKSTSLQKPCKIDKH-ESEGVDPEESLRQFQLELCWCIQQLERTLNEKKGNEKQLQET 67
NK K+ K ID+ E G +P S + +L + ++ + T NE++ EK+LQE
Sbjct: 443 NKTKANVEDKTQSIDRSMEETGDEPVNSAAE-KLVVLASLEGPKSTQNEEEEKEKRLQEQ 501
Query: 68 WKVL 71
K L
Sbjct: 502 KKRL 505
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.310 0.126 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,875,082
Number of Sequences: 28952
Number of extensions: 199382
Number of successful extensions: 655
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 638
Number of HSP's gapped (non-prelim): 37
length of query: 216
length of database: 12,070,560
effective HSP length: 78
effective length of query: 138
effective length of database: 9,812,304
effective search space: 1354097952
effective search space used: 1354097952
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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