GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000122-TA|BGIBMGA000122-PA|undefined
         (216 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   5.1  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   6.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   6.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.9  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 102 EEKKLSKMTSKIKISEVQEKPKATFFRKSVFQTTGDESFRFNFDLTS-DQIENGNISTVT 160
           +EK L + TS+ + S  +E+ + ++  +  ++  G+ S   + D T  ++ +   I +  
Sbjct: 259 KEKLLEERTSRERYSRSREREQKSYKNEREYRKYGETSKERSRDRTERERSKEPKIISSL 318

Query: 161 EENNKIGNTESVIADDNIQGNSKDHNTEEAN 191
             N K  N  +    +N   N  ++N    N
Sbjct: 319 SNNYKYSNYNNY---NNNYNNYNNYNNNYNN 346


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 15  SLQKPCKIDKHESEGVD 31
           +LQ+P  +DK+ +EG++
Sbjct: 359 TLQRPQDVDKYPAEGLE 375


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 144 FDLTSDQIENGNISTVTEENNKIGNT 169
           F +T   I N N +T +EE +   +T
Sbjct: 127 FHITQYMISNANSNTTSEEESSDNST 152


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 15/76 (19%), Positives = 35/76 (46%)

Query: 102 EEKKLSKMTSKIKISEVQEKPKATFFRKSVFQTTGDESFRFNFDLTSDQIENGNISTVTE 161
           +EK L + TS+ + S  +E+ + ++  ++ ++   + S   + D T  +         + 
Sbjct: 264 KEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDKTERERSKERKIISSL 323

Query: 162 ENNKIGNTESVIADDN 177
            NN I N  +   ++N
Sbjct: 324 SNNYISNISNYNNNNN 339


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 141 RFNFDLTSDQIENGNISTVTEENNKIGNTESVIADDNIQGNSKDHNTEE 189
           R N +  +D  +NGN     + N    N      +DN + +++ H++ +
Sbjct: 494 RQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHSSK 542


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 23  DKHESEGVDPEESLRQFQLELCWCIQQLERTLNEK 57
           +K  S  VD    L +F + + W I ++    NEK
Sbjct: 188 EKSGSNVVDVGVDLSEFYMSVEWDILEVPAVRNEK 222


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 23  DKHESEGVDPEESLRQFQLELCWCIQQLERTLNEK 57
           +K  S  VD    L +F + + W I ++    NEK
Sbjct: 188 EKSGSNVVDVGVDLSEFYMSVEWDILEVPAVRNEK 222


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 50  LERTLNEKKGNEKQLQETW 68
           + +  N+K G++  LQ TW
Sbjct: 326 IPKVKNKKAGSKHLLQNTW 344


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.126    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,084
Number of Sequences: 429
Number of extensions: 2676
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 216
length of database: 140,377
effective HSP length: 55
effective length of query: 161
effective length of database: 116,782
effective search space: 18801902
effective search space used: 18801902
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)