Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000121-TA|BGIBMGA000121-
PA|IPR007704|Mannosyltransferase, DXD
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1954| Best HMM Match : No HMM Matches (HMM E-Value=.)              157   2e-38
SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.78 
SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  

>SB_1954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score =  157 bits (380), Expect = 2e-38
 Identities = 83/236 (35%), Positives = 137/236 (58%), Gaps = 20/236 (8%)

Query: 18  IGLTVRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYL 77
           +   VR+  ++YG   DR   V YTD+DY VFTDAARH+  G SPY R TYRY+PL+A L
Sbjct: 61  VAFLVRIGLMVYGEWQDRTMAVKYTDIDYHVFTDAARHVFYGRSPYERATYRYTPLLAML 120

Query: 78  MIPNIIVGREFGKILFSVFDIFLAAAVKSLVERQLGVAKYASVTAKYCALSWLYNPLSIG 137
           + PNI +   FGK+LF +FDI L+  +   ++++ G++    V + +    W +NP+   
Sbjct: 121 LTPNISLNIAFGKVLFILFDI-LSGFLIFAIQKERGLSYKTCVVSSW---FWFFNPMPAT 176

Query: 138 ISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVLSGFFLGSAIHLRLYPLAFTFPMYL 197
           +S+RGNA+S    L+++++YF             VL+GFFL  A+H +++P+ ++ P++L
Sbjct: 177 VSSRGNAESIMAALVLITLYFALKR-------KEVLTGFFLALAVHFKIFPIIYSLPLFL 229

Query: 198 SLG---------KYKINRNTPIKEGLVSLLPNKNQMILAFSCVTSLLFITYAMYLR 244
            +G         K   N    + + L+  +    ++IL   CVT+L+ +T  +Y+R
Sbjct: 230 LIGERSRDAGLSKSWSNGGLELCKALLGYIFRPARVILVLVCVTTLVGLTLGLYVR 285


>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 32.3 bits (70), Expect = 0.78
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 328 SVMTSQYFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQCAWLFFAYQLEFKCRQVFML 387
           S M   Y IW +    L L + ++    ++YL  +W+   C    +   L   C Q    
Sbjct: 234 SCMQYLYEIWLVLACMLYLYEIRLVLACMLYLYEIWLILACMLYLYEIWLILACMQYLYE 293

Query: 388 IW-CQSVMFYGSNVFILTQLIKY 409
           IW   + M Y   ++++   + Y
Sbjct: 294 IWLVLACMLYLYEIWLVLACMLY 316



 Score = 30.3 bits (65), Expect = 3.1
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 334 YFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQCAWLFFAYQLEFKC 381
           Y IW +    L L + ++ P  ++YL  +W+   C    +  +L   C
Sbjct: 5   YEIWLVLACMLYLYEIRLVPACMLYLYEIWLVLACMQYLYEIRLILAC 52



 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 344 LVLKDFKMEPGKIVYLVFLWIATQCAWLFFAYQLEFKCRQVFMLIW-CQSVMFYGSNVFI 402
           L L +  + P  ++YL  +W+   C    +  +L   C Q    IW   + M Y   +++
Sbjct: 536 LYLYEIWLVPACMLYLYEIWLVLACMLYLYEIRLVLACMQYLYEIWLILACMLYLYEIWL 595

Query: 403 LTQLIKY 409
           +   + Y
Sbjct: 596 VLACMLY 602


>SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 334 YFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQCAWLFFAYQLEFKCRQVFMLIW 389
           Y IW +    L L + ++    ++YL  +W+   C    +   L   C Q    IW
Sbjct: 31  YEIWLVLACMLYLYEIRLVLACMLYLYEIWLILACMLYLYEIWLILACMQYLYEIW 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.331    0.145    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,447,194
Number of Sequences: 59808
Number of extensions: 526426
Number of successful extensions: 1166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 21
length of query: 428
length of database: 16,821,457
effective HSP length: 84
effective length of query: 344
effective length of database: 11,797,585
effective search space: 4058369240
effective search space used: 4058369240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 61 (28.7 bits)