GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000121-TA|BGIBMGA000121-
PA|IPR007704|Mannosyltransferase, DXD
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual    225   1e-59
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    29   1.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   2.9  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   2.9  
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    27   5.0  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   8.8  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score =  225 bits (549), Expect = 1e-59
 Identities = 132/390 (33%), Positives = 209/390 (53%), Gaps = 22/390 (5%)

Query: 16  ICIGLTVRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIA 75
           + +GL +RLV + YG  HDR S + +TD+DY VF+DA++++  G SPY+R TYRY+P++A
Sbjct: 439 LLLGLLMRLVLLNYGIWHDRRSALKFTDIDYFVFSDASKYVSIGMSPYMRDTYRYTPMLA 498

Query: 76  YLMIPNIIVGREFGKILFSVFDIFLAAAVKSLVERQLGVAKYASVTAKYCALSWLYNPLS 135
            L++P       +GK LFS+ D+     +  L+ R++   K + + + +    W+ NP  
Sbjct: 499 ILLLPTQYGFPSWGKYLFSISDLIAGWLMIKLLSRRISY-KRSLIYSSF----WILNPFV 553

Query: 136 IGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVLSGFFLGSAIHLRLYPLAFTFPM 195
             ISTRGN ++    L +  +Y ++         ++ L+   LG ++H ++YP  +    
Sbjct: 554 AIISTRGNCEAILGILSIALLYLIEKK-------SVWLASLILGFSVHFKIYPFMYGIAF 606

Query: 196 YLSLGKYKINRNTPIKEGLVSLLPNKNQMILAFSCVTSLLFITYAMYLRYGYEFLFETYI 255
            +   K K  + +   E  +SLL + NQ+ +    +         MY  YG  FL  TY+
Sbjct: 607 LVYFSKPK--KGSTFMEKFLSLL-SINQLKIVVGSLFMFTICNLLMYYLYGSPFLEHTYL 663

Query: 256 YHLLRKDTRHNFSI--LFYYTYLTKDQMSFDIVKILAQVSKCVLLFLLSLNYGCDPKTLP 313
           YH  R D RHNFS+  L  Y   +    +  +   L Q+S C+L+ L+   +G   K LP
Sbjct: 664 YHFGRTDHRHNFSLHHLNLYYESSFGAKASSLFAFLPQLSLCMLIPLV---FG--KKNLP 718

Query: 314 FAMFAQAVVLVAYNSVMTSQYFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQCAWLFF 373
             +FAQ    V +N V TSQYF+W+L  LPLVL + K+   K +  + LWI  Q  WL  
Sbjct: 719 GTLFAQTFAFVTFNKVCTSQYFMWYLVFLPLVLPNSKLLSKKGLICLSLWIIGQLLWLIS 778

Query: 374 AYQLEFKCRQVFMLIWCQSVMFYGSNVFIL 403
           AY LE   + VF+ +W   ++F+  NV+ L
Sbjct: 779 AYNLEMLGKSVFIPLWLSGLLFFFFNVYEL 808


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 148  PCFLIVLSIYF-LQSNVFKNSITNIVLSGFFLGSAIHLRLYPLAFTFPMYLSLGKYKINR 206
            P F+   SIY   + N    S T  +++ FFL  A+    +   F F  Y   G Y+ N 
Sbjct: 1142 PKFIYFRSIYEQYEQNTAIYSRTAFIIA-FFLVEAVINCCFATLFFFGWYYPSGFYEFNH 1200

Query: 207  NTPIKEGLVSLL 218
            N P   G   L+
Sbjct: 1201 NIPFYGGFAWLM 1212


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 235  LFITYAMYLRYGYEFLFETYIYHLLRKDTRHNFSILFYYTYLTKDQMSFDI 285
            LFIT       GYE L E  IY +L  D      + F Y  +  DQ+S D+
Sbjct: 1527 LFITLGKPGYEGYEQLLEDLIYFIL--DIFQFRGLHFAYDEIDTDQLSMDL 1575


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 354 GKIVYLVFLWIATQCAWLF-FAYQLEFKCRQVFMLIWCQSVMFYGSNVFILTQLIKYYRP 412
           G I+ LV++WI  +   LF  +Y + +      ++ W  S++F+  ++  +T L  ++ P
Sbjct: 171 GNILLLVYIWIFPESRRLFILSYSISYGTLAWSVVAWRNSLLFH--SIDKITSLFIHFFP 228


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/52 (28%), Positives = 22/52 (42%)

Query: 15  HICIGLTVRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRH 66
           H+ + LT+R  F L+ N+    S+  Y      V T   R   EG    + H
Sbjct: 120 HVSMNLTLRRTFGLFANVRPCVSITGYKTPYDNVNTVLIRENTEGEYSGIEH 171


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 315 AMFAQAVVLVAYNSVM---TSQYF---IWFLSLLPLVLKDFKMEPGKIVYLVF 361
           ++F  A +++++N  M    SQ+     +  ++LP V + F   PG +V+ VF
Sbjct: 334 SLFNYAAIIISFNHQMIPHVSQFCHVRSYLSAILPSVCRIFLPSPGTVVFCVF 386


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.331    0.145    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,366
Number of Sequences: 5004
Number of extensions: 84784
Number of successful extensions: 226
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 6
length of query: 428
length of database: 2,362,478
effective HSP length: 75
effective length of query: 353
effective length of database: 1,987,178
effective search space: 701473834
effective search space used: 701473834
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 55 (26.2 bits)