GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000121-TA|BGIBMGA000121-
PA|IPR007704|Mannosyltransferase, DXD
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0629 + 26248960-26249236,26249766-26249894,26250291-262508...   231   8e-61

>03_05_0629 +
           26248960-26249236,26249766-26249894,26250291-26250847,
           26250933-26251250
          Length = 426

 Score =  231 bits (565), Expect = 8e-61
 Identities = 134/395 (33%), Positives = 206/395 (52%), Gaps = 12/395 (3%)

Query: 22  VRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPN 81
           VR   +  G   D    V YTDVDY VF+DAA  +  G SP+ R TYRYSPL+AYL++PN
Sbjct: 18  VRAAMLALGEWQDAHLEVRYTDVDYLVFSDAAASVAAGGSPFARATYRYSPLLAYLLVPN 77

Query: 82  IIVGREFGKILFSVFDIFLAAAVKSLVERQLGVAKYASVTAKYCALSWLYNPLSIGISTR 141
            ++   +GK+LFS  D+ +   + ++++ + GV      T  +  ++WL+NP +  I TR
Sbjct: 78  SLLHPTWGKLLFSAADLLVGLFIDTILKLR-GV---PDSTRIWSVVAWLFNPFTFTIGTR 133

Query: 142 GNADSFPC-FLIVLSIYFLQSNVFKNSITNIVLSGFFLGSAIHLRLYPLAFTFPMYLSLG 200
           GN       F   L ++F    +       IVL   + G A    L        +     
Sbjct: 134 GNCRVLQASFWYGLIVHFRIYPIIYAIPFVIVLGKNYAGPAGRPILTQWTSKQHLQSDKS 193

Query: 201 KYKINRNTPIKEGLVSLLPN---KNQMILAFSCVTSLLFITYAMYLRYGYEFLFETYIYH 257
              + R T +   L + L +   +N ++      +     T   +  YG+EFL E  +YH
Sbjct: 194 SPSVERATSLLTNLWNFLTSLITRNTILFGLLSGSMFFLWTGVFFYLYGWEFLNEALLYH 253

Query: 258 LLRKDTRHNFSILFYYTYLTKDQMSFDIVKILAQVSKCVLLFLLSLNYGCDPKTLPFAMF 317
           L R D RHNFSI FY+ YL   Q    I K+ + + + ++   L L +  D   LPF +F
Sbjct: 254 LSRTDPRHNFSIYFYHIYLHHQQGFSSIQKLASFLPQLIVQLALILRFSRD---LPFCLF 310

Query: 318 AQAVVLVAYNSVMTSQYFIWFLSLLPLVLKDFKME-PGKIVYLVFLWIATQCAWLFFAYQ 376
            Q V  VA+N VMT+QYF+WF  LLPL+L    M+   K +  + +W+ +Q  WL +AY 
Sbjct: 311 LQTVAFVAFNKVMTAQYFVWFFCLLPLILPWTTMKLKWKGLACILVWMGSQLHWLMWAYM 370

Query: 377 LEFKCRQVFMLIWCQSVMFYGSNVFILTQLIKYYR 411
           LEFK + VF+ +W   +MF  +N+F++  +I +++
Sbjct: 371 LEFKGQNVFIPLWAAGLMFLAANIFVMLMVINHHK 405


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.331    0.145    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,093
Number of Sequences: 37544
Number of extensions: 438308
Number of successful extensions: 918
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 1
length of query: 428
length of database: 14,793,348
effective HSP length: 84
effective length of query: 344
effective length of database: 11,639,652
effective search space: 4004040288
effective search space used: 4004040288
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 61 (28.7 bits)