GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000121-TA|BGIBMGA000121-
PA|IPR007704|Mannosyltransferase, DXD
         (428 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...   236   3e-62
U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical pr...    32   0.90 
AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical ...    32   0.90 
U00046-3|AAC47045.2|  244|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AC024805-5|AAK39339.1|  494|Caenorhabditis elegans Hypothetical ...    30   2.7  
AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical ...    30   2.7  
U50310-2|AAA92539.2|   79|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine re...    29   4.8  
U41017-7|AAY86315.1|  251|Caenorhabditis elegans Hypothetical pr...    29   6.3  
AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    29   6.3  
Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical pr...    29   8.4  
U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine rece...    29   8.4  

>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score =  236 bits (577), Expect = 3e-62
 Identities = 138/404 (34%), Positives = 212/404 (52%), Gaps = 19/404 (4%)

Query: 16  ICIGLTVRLVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIA 75
           + +    R++ + Y +IHD    V +TD+DY VF+DAA+H+  G SP+ R TYRY+P +A
Sbjct: 19  LLVAFVARIILVFYAHIHDYLFKVNFTDIDYHVFSDAAKHVSNGGSPFDRATYRYTPALA 78

Query: 76  YLMIPNIIVGREFGKILFSVFDIFLAAAVKSLVERQLGVAKYASVT------AKYCALSW 129
           ++++P ++   +FGKILF +FDI +A     ++E+ L   K  +             + W
Sbjct: 79  WILLP-VVHFPDFGKILFCIFDILVAILYFKIMEKDLNETKSETREEMKDDQTMNVVIYW 137

Query: 130 LYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVLSGFFLGSAIHLRLYPL 189
           L NPL+  IS RGNA+S    +++L+I  LQ   +K++    ++ G     AI L++YPL
Sbjct: 138 LANPLTAIISARGNAESIVAAVVLLNIVLLQKGYWKSAA---LVHGAL---AIQLKIYPL 191

Query: 190 AFTFPMYLSLGKYKINRNTPIKEGLVSLLPNKNQMILAFSCVTSLLFITYAMYLRYGYEF 249
            +   ++LSL    I   + +     SL+ N          +TS   +    +  YG  F
Sbjct: 192 IYLPSVFLSLST--IGEQSCVVNKFKSLVSNWKGFAYMLVTLTSFAAVVLFFFQIYGQLF 249

Query: 250 LFETYIYHLLRKDTRHNFSILFYYTYLTKDQMSFD-IVKILAQVSKCVLLFLLSLNYGCD 308
           L E  IYH+ R+D  HNFS  FY  YL +   +   I+ + A + + VL+   +  +  D
Sbjct: 250 LDEYLIYHVKRRDLAHNFSPYFYLLYLYEANPTMSQIIGLGAFIPQIVLIVFFAFKHYDD 309

Query: 309 PKTLPFAMFAQAVVLVAYNSVMTSQYFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQC 368
              LPF  F      V YN V TSQYF+W++ LLPL+     M     + L+  W ATQ 
Sbjct: 310 ---LPFCWFITTFAFVTYNKVCTSQYFVWYIVLLPLLAHKIMMSRQLALSLMAAWFATQG 366

Query: 369 AWLFFAYQLEFKCRQVFMLIWCQSVMFYGSNVFILTQLIKYYRP 412
            WL  AY  EF+    F L++  S +F  +N FIL Q+I +Y P
Sbjct: 367 IWLLAAYLFEFQGWNTFFLMFLASCLFLIANSFILKQIINHYVP 410


>U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical
           protein F39B3.2 protein.
          Length = 414

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 11/193 (5%)

Query: 121 TAKYCALSWLYNPLSIGISTRGNADSFPC---FLIVLSIY--FLQSNVFKNSITNIVLSG 175
           TA +     + N LS+ I  R      P    +L+ L+++   L +N F       +  G
Sbjct: 37  TAFFVFTGIILNLLSVSIFLRKERAGTPAIQYYLVTLTLWQTALLANAFLLYSFPNLWWG 96

Query: 176 FFLGSAIHLRLYPLAFTFPMYLSLGKYKINRNTPIKEGLVSLLPNKNQMILAFSCVTSLL 235
             +    ++ LYP  +TF      G   I     I   L    P K++ I     V  L+
Sbjct: 97  HLVSQGTYVYLYPYVYTFANTTHTGSVWIVLTLTIDRYLALCQPLKHRAIGKKRRVRRLM 156

Query: 236 FITYAMYLRYGYEFLFETYIYHLLRKDTRHNFSILFYYTYLTKDQMSFDIVK-ILAQV-- 292
            +  AM + +     FE ++  +  +D     + +   T L  +++ + I   ILA V  
Sbjct: 157 IVVSAMAVMFSIPRFFEVHVILICDEDQLSCVATI-DRTELFDNRLYWTIYHVILAMVFV 215

Query: 293 --SKCVLLFLLSL 303
               C++LF L+L
Sbjct: 216 TLLPCLILFALTL 228


>AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical
           protein H10E21.2 protein.
          Length = 382

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 9/139 (6%)

Query: 216 SLLPNKNQMILAFSCVTS---LLFITYAMYLRYGYEFLFETYIYHLLRK---DTRHNFSI 269
           SL+P    M++ F CV     LL +T  ++ ++  +++F   ++ LL +    T H    
Sbjct: 45  SLVPRNIVMLILFICVADLLVLLHLTLFVHFQFEKQWIFGNIVFILLHRGGQQTHHPIGS 104

Query: 270 LFYYTYLTKDQMSFDIVKILAQVSKCVLLFLLS-LNYGCDPKTLPFAMFAQAVVLVAYNS 328
             Y   + +   S D+ ++L + ++ +   + + L YG D      AM    +  V +  
Sbjct: 105 SPYQQGVLR-ICSNDVTQMLQKEAEHMEYCISAVLCYGVDCSRSFDAMVFNILAFV-FGY 162

Query: 329 VMTSQYFIWFLSLLPLVLK 347
             TS  +++F   +P++LK
Sbjct: 163 GFTSAAYMYFYLRVPMILK 181


>U00046-3|AAC47045.2|  244|Caenorhabditis elegans Hypothetical
           protein R13F6.5 protein.
          Length = 244

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 14/57 (24%), Positives = 25/57 (43%)

Query: 334 YFIWFLSLLPLVLKDFKMEPGKIVYLVFLWIATQCAWLFFAYQLEFKCRQVFMLIWC 390
           +  W+  ++ L   D  +    + Y  FLWI   C++   ++    KCR V  +  C
Sbjct: 19  FTFWYQIIVVLYAADGTISQWALYYFHFLWIIIVCSYFSASFTPPTKCRDVEKVEHC 75


>Z22174-2|CAA80130.2|  410|Caenorhabditis elegans Hypothetical
           protein K01B6.3 protein.
          Length = 410

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 220 NKNQMILAFSCVTSLLFITYAMYLR----YGYEFLFETYIYHLLRKDTRHNFSILFYYTY 275
           NKN +++ F  + SL+F+   M+LR      Y F+++   +     +++  +    ++TY
Sbjct: 187 NKNPLLIRFVAIISLIFLFVQMFLRIITVQVYNFMWDVRKFRKSLNNSKWRYRKRVHFTY 246

Query: 276 LTKDQMSF 283
            +  Q  F
Sbjct: 247 CSIMQEDF 254


>AC024805-5|AAK39339.1|  494|Caenorhabditis elegans Hypothetical
           protein Y51H7C.6b protein.
          Length = 494

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 24  LVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPNII 83
           L  +  G   D    V Y D  +  F   A  ++E N P L H+Y    L+ ++ I    
Sbjct: 261 LAIMKAGGTDDNRRNVLYADTLFMFFEGVAE-IIESNLPVLEHSYGLEKLLDFMFILQAR 319

Query: 84  VGREFGKILFSVFD 97
           +  EF + L   FD
Sbjct: 320 ID-EFFRRLHEEFD 332


>AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical
           protein Y51H7C.6a protein.
          Length = 801

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 2/74 (2%)

Query: 24  LVFILYGNIHDRFSVVPYTDVDYKVFTDAARHLVEGNSPYLRHTYRYSPLIAYLMIPNII 83
           L  +  G   D    V Y D  +  F   A  ++E N P L H+Y    L+ ++ I    
Sbjct: 261 LAIMKAGGTDDNRRNVLYADTLFMFFEGVAE-IIESNLPVLEHSYGLEKLLDFMFILQAR 319

Query: 84  VGREFGKILFSVFD 97
           +  EF + L   FD
Sbjct: 320 ID-EFFRRLHEEFD 332


>U50310-2|AAA92539.2|   79|Caenorhabditis elegans Hypothetical
           protein ZC487.3 protein.
          Length = 79

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 136 IGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVLSGFFLGSAIHLRLYPLAFTFPM 195
           I +S R +   +     + SI+F++   FK     I  +G+   S  HL   P  F FP+
Sbjct: 2   ISLSCRYSQQFYCIDQYIFSIFFIEFFAFKLEKPLIAENGWLFDSE-HLLTLP--FPFPL 58

Query: 196 YLSLGKYKINRNT 208
            LS   +K+  N+
Sbjct: 59  VLSFRFFKVQTNS 71


>AF016436-3|AAC25896.1|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein40 protein.
          Length = 331

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 125 CALSWLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVL 173
           CAL+W+ NP+ I +    +++ F  +  +L +YF   N+   SI NIV+
Sbjct: 15  CALAWVVNPIFIYLIFTESSNKFGNYRFLL-LYFALFNL-TYSIVNIVV 61


>U41017-7|AAY86315.1|  251|Caenorhabditis elegans Hypothetical
           protein T26C11.8 protein.
          Length = 251

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 3/119 (2%)

Query: 220 NKNQMILAFSCVTSLLFITYAMYLRYGYEFLFETYIYHLLRKDTRHNF-SILFYYTYLTK 278
           NK    ++  CV     + + M L   ++F F+  ++ ++  DT+H F +    Y     
Sbjct: 6   NKTTSWVSTYCVIRTKSLRF-MTLGINWDFNFDLAMFFVVWSDTKHVFHTCTKGYEAKMI 64

Query: 279 DQMSFDIVKILAQVSKCVLLFLLSL-NYGCDPKTLPFAMFAQAVVLVAYNSVMTSQYFI 336
           + + + I+++L  ++   L+   S+ +Y  D K L      Q +   A N  + + +F+
Sbjct: 65  NVVGYSILQVLLDLTVLQLMLRFSITSYRLDSKDLNSINLDQEIEPTADNIKLVALFFL 123


>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 125 CALSWLYNPLSIGISTRGNADSFPCFLIVLSIYFLQSNVFKNSITNIVL 173
           CAL+W+ NP+ I +    +++ F  +  +L +YF   N+   S+ NIV+
Sbjct: 15  CALAWVVNPIFIYLIFTESSNKFGNYRFLL-LYFALFNL-TYSVVNIVV 61


>Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical
           protein T04A11.10 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 164 FKNSITNIVLSGFFLGSAIHLRLYPLAFTFPMYLSLGKYKI--------NRNTPIKEGLV 215
           FK+S  N++ + F + ++I   +  L   + +Y  +   K+        NRNT  +   V
Sbjct: 195 FKDSWHNVINAPFLVLNSIIWLIICLITNYFLYRKIRNLKVSARCQLHVNRNTNYQNAEV 254

Query: 216 SLLPNKNQMILAFSCVTSLLFI 237
           SL      MILA+  +T+L+F+
Sbjct: 255 SLTLTATSMILAY--ITNLVFL 274


>U55363-2|AAA97961.3|  357|Caenorhabditis elegans Serpentine
           receptor, class h protein28 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 224 MILAFSCVTSLLFITYAMYLRYGYEFLFETYIYHLLRKDTRHNFSILFYYTYLTKDQMSF 283
           +I+    V  + F  Y + +R+G+ F++ TYI  +    +  NF++L    Y  +D   F
Sbjct: 127 LIIRLKSVLPITFQYYKLSIRFGHLFVYGTYISSVC---SLSNFALL----YENQDNAKF 179

Query: 284 DIVKILA 290
              K+LA
Sbjct: 180 FWYKLLA 186


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.331    0.145    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,327,508
Number of Sequences: 27539
Number of extensions: 431661
Number of successful extensions: 1216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1207
Number of HSP's gapped (non-prelim): 14
length of query: 428
length of database: 12,573,161
effective HSP length: 83
effective length of query: 345
effective length of database: 10,287,424
effective search space: 3549161280
effective search space used: 3549161280
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 61 (28.7 bits)