Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000120-TA|BGIBMGA000120-PA|IPR005377|Vacuolar protein
sorting-associated protein 26
         (431 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   8.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 327 DDNSARATPSNPDPENVMQRSVSPSMPEKQNGPLQMEREKPEAFIDKLAGAHINENDTND 386
           +DN       N + +N  +++ +     KQNG  Q + ++     ++      N+ND N 
Sbjct: 476 NDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNG---NRQNDNQNNQNDNNR 532

Query: 387 TSDEI 391
             +++
Sbjct: 533 NDNQV 537


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 136 RRLTDITKEVDIAVHTLCSYPDVLNSIKM 164
           R  +D+ KE+D++ + L S PD L  + +
Sbjct: 428 RNCSDL-KELDLSGNELTSVPDALRDLAL 455


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,006
Number of Sequences: 429
Number of extensions: 6413
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 2
length of query: 431
length of database: 140,377
effective HSP length: 60
effective length of query: 371
effective length of database: 114,637
effective search space: 42530327
effective search space used: 42530327
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)