Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000120-TA|BGIBMGA000120-PA|IPR005377|Vacuolar protein
sorting-associated protein 26
(431 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 347 2e-96
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 36 0.011
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 34 0.034
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 33 0.10
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 31 0.24
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 30 0.55
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 29 1.3
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 28 2.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 2.2
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.2
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 28 2.2
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 28 2.2
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 28 2.9
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 28 2.9
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 2.9
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.8
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces... 27 3.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 5.1
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch... 27 6.7
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 6.7
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 26 8.9
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 8.9
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 26 8.9
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 26 8.9
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 347 bits (853), Expect = 2e-96
Identities = 154/298 (51%), Positives = 220/298 (73%), Gaps = 2/298 (0%)
Query: 1 MSFFGFGQTADIEIVFDDADKRKVAEVKTDDGKKEKLLLYYDGETVSGKVNVTLRKPGSK 60
M +F F D+++ D+ ++R + + + G+K+K +Y ETV G V + L K G K
Sbjct: 1 MDYF-FKSPIDVDLHLDNEEERTFVDYEFEQGRKDKAPIYESDETVKGTVMIRL-KDGRK 58
Query: 61 LEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQHTSYPFEFANVEKPYEVYT 120
L+H G+K+E IGQIE YD+GN HEF V+ELA PG++ + FEF +V+KPYE Y
Sbjct: 59 LDHDGVKIEFIGQIENTYDKGNIHEFTRSVQELASPGEMRHAQMFEFEFKHVDKPYESYI 118
Query: 121 GSNVRLRYFLRATIVRRLTDITKEVDIAVHTLCSYPDVLNSIKMEVGIEDCLHIEFEYNK 180
G NV+LRY R T+ R++ D+ +E D+ V+ + P+ + I+M+VGI++CLHIEFEY+K
Sbjct: 119 GKNVKLRYICRVTVSRKMKDVIREKDLWVYRFENEPETNSLIRMDVGIDECLHIEFEYSK 178
Query: 181 SKYHLKDVIVGKIYFLLVRIKIKHMEISIIKRETTGSGPNTFTENETVAKYEIMDGAPVR 240
+KYHLKDVI+GKIYF+LVRIK++ ME+SII+RET G+ PN ++ +ET+ +++IMDG P R
Sbjct: 179 NKYHLKDVIIGKIYFILVRIKVQRMEVSIIRRETIGTSPNQYSNSETITRFQIMDGNPNR 238
Query: 241 GESIPIRVFLAGYDLTPTMRDINNKFSVRYYLNLVLMDTEDRRYFKQQEVILWRKSDK 298
GE+IP+R+FL GY LTPT RD+N KFSVRYYL+L+L+D + RRYFKQ E+ LWR+ D+
Sbjct: 239 GETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLILVDEDQRRYFKQSEITLWRRRDE 296
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 35.9 bits (79), Expect = 0.011
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 329 NSARATPSNPDPENVMQRSVSPSMPEKQNGPLQMEREKP-EAFIDKLAGAHINENDTNDT 387
NS RA+P+ D N + + EKQ+ P+ E P + I+K + NE D +
Sbjct: 31 NSTRASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNESPNDTTINKGEDGNENEVDNVNN 90
Query: 388 SDEIEEPKPVEK 399
+D+ E+ VE+
Sbjct: 91 NDKKEDEDNVEE 102
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 34.3 bits (75), Expect = 0.034
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 320 RKQSVSSDDNSARATPSNP---DPENVMQRSVSPSMPEKQNGPLQMEREKPEAFIDKLAG 376
R +VSS N + T S+ E ++Q+ + + E+QN Q + E+ A +D+L
Sbjct: 111 RLTNVSSSSNLSMNTISSTALTPTEKILQKRIEDLLYERQNH--QQQLEEVLATVDQLQS 168
Query: 377 AHINENDTNDTSDEIEE 393
N ND D DE+ E
Sbjct: 169 LVTNFNDQQDEVDELRE 185
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 32.7 bits (71), Expect = 0.10
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 304 HPHHPQTVSYQGHQSLRKQSVSSDDNSARATPSNPDPENVMQRSVSPSMPEKQNGPLQME 363
H +VS + ++ S SD + S+ EN S SPS K + ++
Sbjct: 850 HRERSNSVSSKSRETRTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIK 909
Query: 364 REKPEAFIDKLAG------AHINENDTNDTSD-EIEEPKPVEKLPVVD 404
+KPE + + G N +T T+D ++ +PV++ D
Sbjct: 910 PQKPEPALKPVEGTADPKSTKRNHQETEKTADTDVSSTEPVKRQKTAD 957
Score = 26.6 bits (56), Expect = 6.7
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 336 SNPDPENVMQRSVSPSMPEKQNGPLQMEREKPE--AFIDKLAGAHINENDTNDTSDEIEE 393
S P + Q+ P P+ PLQ ++++ + + I + +++N T + +
Sbjct: 172 SQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNGTYYSIPAVNH 231
Query: 394 PKPVEKLPVVDKPLIAEKPQIAEKPTLNRPEPA-GSPN 430
P + P+ P+ A Q A P + PA G+PN
Sbjct: 232 PMAGQ--PIAIAPVPAPN-QAALPPIPPQALPANGTPN 266
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 31.5 bits (68), Expect = 0.24
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 335 PSNPDPENVMQRSVSPSMPEKQNGPLQMER-EKPEAFIDKLAGAH---INENDTNDTSDE 390
P+ P P+ +PS KQ E+ E P + K+ G+ ++ N TN+T +
Sbjct: 323 PAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVIGSSPYVVHSNHTNNTLTD 382
Query: 391 IEEPKPVEKLPVVDKPLIAEKPQIAEKPTLNRPEPAGSPN 430
E P EK LI + LNR P PN
Sbjct: 383 KESSDPTEKCLY----LIEHQRYWVGVGWLNRTLPTDPPN 418
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 30.3 bits (65), Expect = 0.55
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 335 PSNPDPENVMQRSVSPSMPEKQNGPLQMEREKPEAFIDKLAGAHINENDTND 386
PS P VMQ S+ P MP QNG P + ++ + +N D
Sbjct: 246 PSQAIPNPVMQPSLVPQMPYPQNGMYNPSVAPPASLVNLFQQEQLIQNQNLD 297
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 29.1 bits (62), Expect = 1.3
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 314 QGHQSLRKQSVSSDDNSARATPSNPD--PENVMQRSVSPSMPEKQNGPLQMEREKPEAFI 371
Q QSL+ S+ S S+ + + E + + S + P P + E EKP
Sbjct: 317 QFSQSLKIGSLDSKQPSSTKSVAEVKVADEKQLPDASSQATPADSKEPRKEEAEKPVTSA 376
Query: 372 DKLAGAHINENDTNDTSDEIEEPKP 396
+++ + + D N +S EE KP
Sbjct: 377 TEVSSEKVEKVDGNTSSPSKEEEKP 401
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 316 HQSLRKQSVSSDDNSARATPSNPDPENVMQRSVSPSMPEKQNGPLQMEREKPEAFIDKLA 375
H + +K+S + DD++ P + D N + S + P + E+ L
Sbjct: 77 HDNSKKESTNLDDSNMLEEPKHHDNSN--KESTNLDDLNMSEEPKHHDSSNKES--TNLD 132
Query: 376 GAHINENDTNDTSDEIEEPKP 396
++++E++ N + +IEEPKP
Sbjct: 133 NSNMDESE-NQKNFKIEEPKP 152
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 153 CSYPDVLNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVRIKIKHMEISIIK 211
C+Y VL+S K + + LH K H D+I G+ + + K+K +S K
Sbjct: 611 CNY--VLSSSKNPMNLLFTLHNSITDGKLNVHCNDIIPGRYHLKTIVFKLKDSVLSFQK 667
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 28.3 bits (60), Expect = 2.2
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 2/91 (2%)
Query: 309 QTVSYQGHQSLRKQSVSSDDNSARATPSNPDPENVMQRSVSPSMPEKQNGPLQMER--EK 366
Q + + L + + +SD+ + P+ +NVMQ + P+ P K + + ++
Sbjct: 234 QNTPFLESKVLPQNNETSDEENVDVKPAAGTVKNVMQAFLQPATPAKDTASKEPSKSSQQ 293
Query: 367 PEAFIDKLAGAHINENDTNDTSDEIEEPKPV 397
P ++A + D + +E P+
Sbjct: 294 PVRTKPRIAQSPFLAQDAKENGGNVEVSSPL 324
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 170 DCLHIEFEYNKSKYHLKDVIVGKIYFLL 197
D +HI +EYN S + L+ I+ + LL
Sbjct: 413 DIVHISYEYNSSAFFLRIAIITTLLILL 440
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 2.2
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 322 QSVSSDDNSARATPSNPDPENVMQRSVSPSMPEKQNGPLQMEREKPEAFIDKLAGAHINE 381
+ +S +D+S P+ ++ Q S+ ++ + Q +++E + F+ K A +NE
Sbjct: 294 KELSVEDDSLELKEITPEALDIGQTSLFTTLNQTQ-----VKKEDNKKFLLKEINAKLNE 348
Query: 382 NDTNDTSDEIEEPKPVEKLPVVDKPLIAEKPQIAEKPTLNR 422
+D D+ EIE L ++K ++E+ + K L +
Sbjct: 349 DDI-DSELEIEVKPKTTALDNIEKSKLSEENEHGIKGKLKQ 388
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.9 bits (59), Expect = 2.9
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 33 KKEKLLLYYDGETVSGKVNVTLRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLV 90
K K+ +YY+ +G + L K S + I V + QI+ YD G ++ F SLV
Sbjct: 296 KNRKVYMYYE----NGSQLLALDKDAS---NDAILVTSMSQIDNIYDNGFYNNFFSLV 346
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 2.9
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 361 QME-REKPEAFIDKLAGAHINENDTNDTSDEIEEPKPVEKLPVVDKPLIAEKPQIAEKPT 419
QME R+ ++FIDK N +++ I K +EKLP+++KP E+ + E P
Sbjct: 457 QMEYRKHLQSFIDKF---RYNAAKSSEAQSRI---KKLEKLPILEKPQTEEEVEF-EFPP 509
Query: 420 LNRPEP 425
+ + P
Sbjct: 510 VEKISP 515
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.9 bits (59), Expect = 2.9
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 287 QQEVILWRKSDKSRLPLHPHHP--QTVSYQGHQSLR--KQSVSSDDNSARATP 335
+++V ++R S K L +HP HP TV G ++++ ++S + N+ R P
Sbjct: 793 EEKVPIYRSSSKQPLRIHPTHPLRVTVCLPGSKTIQVARRSFRNSMNANRYDP 845
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 3.8
Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 7/135 (5%)
Query: 296 SDKSRLPLHPHHPQTVSYQGHQSLRKQSVSSDDNSARATPSNPDPENV---MQRSVSPSM 352
S+++RL Q S +S ++S SS ++ + S + V +++V+ S
Sbjct: 20 SEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASE 79
Query: 353 PEKQNGPLQMEREKPEAFIDKLAGAHINENDTNDTSDEIEEPKPVEKLPVVDKPLIAEKP 412
+ + E E+ E+ D + +++ +++ E E + E D+ +
Sbjct: 80 DSESDSESSEEEEETESEED----SEVSDESESESESESESEEESESEEESDESERSGPS 135
Query: 413 QIAEKPTLNRPEPAG 427
+KP +PAG
Sbjct: 136 SFLKKPEKEEAKPAG 150
>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 3.8
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 5/102 (4%)
Query: 312 SYQGHQSLRKQSVSSDDNSARATPS-NPDPENVMQRSVSPSMPEKQNGPLQMEREK-PEA 369
+YQ HQ L+ +NS+ AT S P ++V Q S P + N P E P
Sbjct: 153 AYQQHQYLQSNHNVPTNNSSSATSSTKPSVQSVGQASY-PFLSSVSNFPSNFNSELFPFY 211
Query: 370 FIDKLAGAHINENDTNDTSD--EIEEPKPVEKLPVVDKPLIA 409
F D + E D N + P+ + +P + L+A
Sbjct: 212 FHDVVPSICAFEFDNNIALHFWSVTVPQFAQSMPCIANSLMA 253
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 314 QGHQSLRKQSVSSDDNSARATPSNPDPENVMQRSVSPSMPEKQNGPL 360
Q + +R + D+S ++ + P E+ SVSP +P PL
Sbjct: 436 QENAEIRNITPGLTDSSVHSSSATPQSESSSPNSVSPLLPSSDRLPL 482
>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 26.6 bits (56), Expect = 6.7
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 304 HPHHPQTVSYQGHQSLRKQSVSSDDNSARATPSNPDPENVMQRSVSPSMPEKQNGPLQME 363
HP HPQ V+ QS R+ + T N D EN + + SMP+ + +++
Sbjct: 146 HPMHPQNVANAMVQSAREARAQQQMHGVGNT--NEDVENWLD---AASMPKTSHDMYRLQ 200
Query: 364 REK 366
+ K
Sbjct: 201 KRK 203
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 362 MEREKPEAFIDKLAGAHINENDTNDTSDEIEEPKPVEK 399
+++ P A+ + L H + T+ TSD E K EK
Sbjct: 1243 LQKNDPSAYSNMLEATHFELSTTSSTSDSNEIEKTQEK 1280
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 341 ENVMQRSVSPSMPEKQNGPLQMEREKPEAFIDKLAGAHINEND 383
+ V+++ PS+ E + R E DK +GAH+ E +
Sbjct: 16 DEVVRQVSEPSVEEPIEASVTRYRSDEEKLDDKSSGAHVTEKE 58
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 8.9
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 43 GETVSGKVNVT-LRKPGSKLEHQGIKVELIGQIELFYDRGNHHEFISLVKELARPGDLLQ 101
G SG + +T L +P K+ +K++LI +I + + +H + KE+ + DL
Sbjct: 41 GALASGILKLTILHQPFIKVHT--LKLQLIKRITVLHPAISHCSACAGSKEVLQTWDLAA 98
Query: 102 HTSY-------PFEFANVEKPYEVYTGSNVRLRYFLRATI 134
+T+Y PF + + ++L Y+L AT+
Sbjct: 99 NTTYRPGTQHWPFSWLFPGSLPASVSNRYIKLEYYLEATL 138
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 8.9
Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 351 SMPEKQNGPLQMEREKPEAFIDKLAGAHINENDTNDTS-DEIEEPKPVEKLPVVDKPL-- 407
S ++QN + +RE + I+ G NE ++ E+PKP++++ +K
Sbjct: 239 SEEDRQN--FREKREADQKIIEN--GIRNNEMESEGRKFGHFEKPKPIDRVKKPNKDAQE 294
Query: 408 -----IAEKPQIAEKPTLNRPEPAGSPNQ 431
+AE Q++++ LN P P S ++
Sbjct: 295 EKMRRLAEAEQMSKRRKLNLPSPTVSQDE 323
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.2 bits (55), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 329 NSARATPSNPDPENVMQRSVSPSMPEK 355
N +RA+ NP P N R + PS E+
Sbjct: 376 NQSRASMGNPSPSNWNNRLLQPSSKEQ 402
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.135 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,815
Number of Sequences: 5004
Number of extensions: 103504
Number of successful extensions: 354
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 30
length of query: 431
length of database: 2,362,478
effective HSP length: 75
effective length of query: 356
effective length of database: 1,987,178
effective search space: 707435368
effective search space used: 707435368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)
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