Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000119-TA|BGIBMGA000119-PA|IPR000860|Porphobilinogen
deaminase
         (407 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    26   0.42 
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    24   1.7  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   5.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   5.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   6.9  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   6.9  

>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 363 NMPIDVVIKCDNLGRDLANSLIDKG 387
           N+ +D +IK D L ++  N L++KG
Sbjct: 30  NVDLDEIIKSDRLLKNYVNCLLEKG 54


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 345 LAPNVADRRCFCGLTTNVNMPIDVVIKCDNLGRDLANSL 383
           LAP +  R+ +C L + +     +V  C   GR LA +L
Sbjct: 82  LAPVLCKRQQYCQLMSKLLGNHQLVYNCHTFGRFLAPNL 120


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/17 (47%), Positives = 15/17 (88%)

Query: 300 KHKLSPTEEASSKKIKT 316
           + +L+P+++ASSK+I T
Sbjct: 106 EERLTPSKDASSKRIXT 122


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 136 LRRTAQLNGNYPQLKVVDVRGN 157
           L  T  L GN P L+V+D+  N
Sbjct: 261 LNATKDLFGNMPHLQVLDLSHN 282


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 188 GNRMSKVLPCSEMLYAV 204
           GNR+++   CS  LYAV
Sbjct: 710 GNRLARPANCSPDLYAV 726


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 224 LAPFNHPETYCRVLAERSF 242
           L  FNH E+Y R+   +SF
Sbjct: 25  LVNFNHRESYFRLSKAKSF 43


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,397
Number of Sequences: 317
Number of extensions: 3413
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 6
length of query: 407
length of database: 114,650
effective HSP length: 58
effective length of query: 349
effective length of database: 96,264
effective search space: 33596136
effective search space used: 33596136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)