Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000119-TA|BGIBMGA000119-PA|IPR000860|Porphobilinogen
deaminase
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane synthase|Schiz...   247   2e-66
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    31   0.39 
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    27   3.6  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   3.6  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    27   4.8  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    27   6.3  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    27   6.3  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   8.3  

>SPAC24B11.13 |hem3|SPAC806.01|hydroxymethylbilane
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score =  247 bits (605), Expect = 2e-66
 Identities = 123/277 (44%), Positives = 187/277 (67%), Gaps = 4/277 (1%)

Query: 8   SIHVGSRKSELALVQTNFVIDSLKRNYPEKEFKIVTMTTLGDRVLDQPLPKIGE---KSL 64
           S  +G+RKS+LA++Q+  + + L+++YP  EF I++  T+GD +L + L +      KSL
Sbjct: 6   SFPIGTRKSKLAVIQSEIIREELEKHYPHLEFPIISRDTIGDEILSKALFEFKRQLAKSL 65

Query: 65  FTKDLEDALMSKNVDFVVHSLKDLPTTLPDGLVIGAVFEREDPRDALVLNEKFKEYSLST 124
           +T++LE  L++     +VHSLKDLP+ +PDG+VI  + +R  P DA+V        +++ 
Sbjct: 66  WTRELEALLVTNQCRILVHSLKDLPSEMPDGMVIACIPKRSCPLDAIVFKAGSHYKTVAD 125

Query: 125 LPSGSVIGTSSLRRTAQLNGNYPQLKVVDVRGNLNTRLRKLDDEDGKYSDLILASAGLSR 184
           LP GSV+GTSS+RR A L  N+P L+ VD+RGN+ TRL KLD  D ++  L+LA+AGL R
Sbjct: 126 LPPGSVVGTSSIRRRALLARNFPHLRFVDIRGNVGTRLAKLDAPDSQFDCLVLAAAGLFR 185

Query: 185 MGWGNRMSKVLPCSEMLYAVGQGALAVECRADNEEVLAMLAPFNHPETYCRVLAERSFLK 244
           +G  +R++++L    + YAVGQGALAVE RAD++E++ ML P  H ET    LAER+ +K
Sbjct: 186 LGLKDRIAQMLTAPFVYYAVGQGALAVEVRADDKEMIEMLKPLQHQETLYACLAERALMK 245

Query: 245 TLGGGCSAPVGISTK-LKQNDNVYKLTLTGAVWSLDG 280
            L GGC+ P+G+ T  L  +++ Y+++L G V S DG
Sbjct: 246 RLQGGCAIPIGVQTDVLAISNSSYRISLLGTVLSADG 282


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 199 EMLYAVGQGALAVECRADNEE-----VLAMLAPFNHPETYCRVLAERSFLK 244
           EM+  +GQGA  V C A ++       +  + PFNHP    R L E   L+
Sbjct: 40  EMINLIGQGAYGVVCAALHKPSGLKVAVKKIHPFNHPVFCLRTLREIKLLR 90


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 9   IHVGSRKSELALVQTNFVIDSLKRNYPEKEFKIVTMTTLGDRVLDQPLPKIGEKSLFTKD 68
           ++ G+ KSE A+   N   DS     PE E    T+++  D     PLP    + L   D
Sbjct: 161 VYEGTEKSEKAVADLN---DSSTDVVPESEVSFQTISSRVDNFFAAPLPSEQAEELIEDD 217


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 152  VDVRGNLNTRLRKLDDEDGKYSDL 175
            + V+G L    R L+DED + SDL
Sbjct: 1031 IKVKGQLGIMARSLEDEDARISDL 1054


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 307 EEASSKKIKTDKTVEADNEIAVLNRRITDKTG 338
           E+     +K DKTVE  N++  ++R  TD  G
Sbjct: 177 EQEVISSLKDDKTVETKNDVPEVSRPSTDTIG 208


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 98  IGAVFEREDPRDALVLNEKFKEYSLSTLPSGSVIG 132
           IGA F R +    +  ++ F EY L T+PS + +G
Sbjct: 56  IGAGFARMNCLTVIQASQGFAEYLLQTVPSAAKLG 90


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 65  FTKDLEDALMSKNVDFVVHSLKDLPTTLPD 94
           F   L+D ++SK  DF  HS  D+P   PD
Sbjct: 657 FYNQLKDIVISKKKDFYAHS--DVPAHQPD 684


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 63  SLFTKDLEDALMSKNVDFVVHSLKDLPT 90
           +LF  D  D L+S N DFV+ ++ ++ T
Sbjct: 203 ALFNPDSADDLLSGNPDFVIDAIDNIQT 230


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 106 DPRDALVLNEK----FKEYSLSTLPSGSVIGTSSLRRTAQLNGNYPQLKVVDVRGNLNTR 161
           DP   + +N K    F E S  TL    +  + SL     +N  +P  + + ++  +  R
Sbjct: 234 DPSSFIKINSKEIIDFLEKS-KTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQR 292

Query: 162 LRKLDDEDGKYSDLILASAGLSRMGWGNRMSKVLPC 197
             +  +E+ K    +  + GLS +G    M+  L C
Sbjct: 293 NNQSSNEEQKQEKRVPGTCGLSNLGNTCYMNSALQC 328


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,807
Number of Sequences: 5004
Number of extensions: 76264
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 10
length of query: 407
length of database: 2,362,478
effective HSP length: 74
effective length of query: 333
effective length of database: 1,992,182
effective search space: 663396606
effective search space used: 663396606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)