Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000119-TA|BGIBMGA000119-PA|IPR000860|Porphobilinogen
deaminase
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0513 + 3715406-3715543,3716298-3716708,3716882-3717085,371... 202 5e-52
12_01_0578 - 4731024-4731134,4731200-4731337,4732438-4732500,473... 33 0.41
02_05_0698 + 31005555-31006763 31 1.7
03_05_0893 + 28566436-28566501,28566624-28566903,28567002-285671... 31 2.2
12_02_0247 + 16409988-16411367 30 2.9
11_01_0605 + 4821363-4823246 30 3.8
08_02_1251 - 25592537-25593380,25593589-25593893 29 5.1
02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817 29 5.1
07_01_0292 - 2117212-2117326,2117402-2117527,2117654-2117791,211... 29 6.7
03_03_0137 - 14759337-14759508,14759616-14759813,14759917-147601... 29 6.7
07_01_0148 - 1080134-1080562 29 8.9
05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26... 29 8.9
02_02_0549 + 11410129-11412180 29 8.9
>02_01_0513 +
3715406-3715543,3716298-3716708,3716882-3717085,
3717552-3717729,3717833-3717951
Length = 349
Score = 202 bits (492), Expect = 5e-52
Identities = 113/277 (40%), Positives = 160/277 (57%), Gaps = 12/277 (4%)
Query: 13 SRKSELALVQTNFVIDSLKRNYPEKE----FKIVTMTTLGDRVLDQPLPKIGEKSLFTKD 68
++ S LAL Q + D LK + E +IV + T GD +LD+PL IG K LFTK+
Sbjct: 45 AKDSPLALAQAHETRDKLKAAHSELAEEGAVEIVIIKTTGDMILDKPLADIGGKGLFTKE 104
Query: 69 LEDALMSKNVDFVVHSLKDLPTTLPDGLVIGAVFEREDPRDALVLNEKFKEYSLSTLPSG 128
++DAL+ +D VHS+KD+PT LP+G ++ RED RDA + SL+ LP+G
Sbjct: 105 IDDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFIC---LTASSLAELPAG 161
Query: 129 SVIGTSSLRRTAQLNGNYPQLKVVDVRGNLNTRLRKLDDEDGKYSDLILASAGLSRMGWG 188
SV+G++SLRR +Q+ YP LKVV+ RGN+ TRLRKL ++G +LA AGL R+
Sbjct: 162 SVVGSASLRRQSQILYKYPSLKVVNFRGNVQTRLRKL--KEGDVHATLLALAGLKRLNMA 219
Query: 189 NRMSKVLPCSEMLYAVGQGALAVECRADNEEVLAMLAPFNHPETYCRVLAERSFLKTLGG 248
+ VL EML AV QGA+ + CR+ ++ ++ L+ NH +T V ER FL L G
Sbjct: 220 ETATSVLSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDG 279
Query: 249 GCSAPVGISTKLKQNDNVYKLTLTGAVWSLDGSTKLE 285
C P+ ++ N + G + S DGST E
Sbjct: 280 NCRTPIAAYASRDKDGN---CSFRGLLASPDGSTVYE 313
>12_01_0578 -
4731024-4731134,4731200-4731337,4732438-4732500,
4732596-4732667,4732751-4732891,4733011-4733126,
4733222-4733255,4734151-4734261
Length = 261
Score = 33.1 bits (72), Expect = 0.41
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 306 TEEASSKKIKTDKTVEADNEIAVLNRRITDKTGDLGCED 344
T+ ++++ +K + +E N++ N+RI + +GD GCE+
Sbjct: 45 TKLSNAELVKGENIIEGSNDLGGENKRIIEGSGDSGCEN 83
>02_05_0698 + 31005555-31006763
Length = 402
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 242 FLKTLGGGCSAPVGISTKLKQNDNVYKLTLTGAV--WSLDGSTKLEETLDQTFGQIRKTV 299
F+ T+ G SA +S D++Y + G++ W+LDG+ + +E Q G +
Sbjct: 29 FIATIKGHSSASAYVSALAVDGDSLYIASSDGSIRLWALDGARRSQEEQQQDDGCSSSSS 88
Query: 300 KHKLSPTEEASSKKIKT 316
++ T+ + + T
Sbjct: 89 STTVADTDSSVKSLLAT 105
>03_05_0893 +
28566436-28566501,28566624-28566903,28567002-28567188,
28567353-28567423,28567523-28567600,28567687-28567774,
28567875-28567930,28568054-28568121
Length = 297
Score = 30.7 bits (66), Expect = 2.2
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 98 IGAVFEREDPRDALVLNEKFKEYSLSTLPSGSVIGTSS-LRRTAQLNGNYPQLKVVDVRG 156
IG R +P+ VL + L + + + G++S RR+A+LNG + K + ++G
Sbjct: 57 IGGTTPRRNPKPPRVLTPLRRSGRLVAIAAAAPAGSASGPRRSARLNGQTTEHKALPLKG 116
Query: 157 NLN 159
+L+
Sbjct: 117 SLS 119
>12_02_0247 + 16409988-16411367
Length = 459
Score = 30.3 bits (65), Expect = 2.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 269 LTLTGAVWSLDGSTKLEETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKT 319
L L G V LD +T T+D+ F + R +H L P E S + + T
Sbjct: 407 LRLGGTVCQLDRATMAIRTIDEEFPEFRYRSRHMLLPYEMGLSSWVPSIST 457
>11_01_0605 + 4821363-4823246
Length = 627
Score = 29.9 bits (64), Expect = 3.8
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 339 DLGCEDLAPNVADRRCFCGLTTNVNMPIDVVIKCDNLGRDLANSLIDKGALEVMKISHD 397
+L DL+ N GL N+ + + ++ +NL D+ +S D ALE++ +SH+
Sbjct: 391 NLALIDLSSNQVQGNIPIGLG-NLEQLVVLKLQKNNLSGDIPSSFSDMSALEILNLSHN 448
>08_02_1251 - 25592537-25593380,25593589-25593893
Length = 382
Score = 29.5 bits (63), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 186 GWGNRMSKVLPCSEMLYAVGQGALAVE-CRADN 217
GWG RM+ C +G GA A+ CR D+
Sbjct: 188 GWGVRMASSARCRRRARGLGDGAAAIHMCRVDH 220
>02_01_0426 + 3113443-3114220,3119557-3119693,3119831-3120817
Length = 633
Score = 29.5 bits (63), Expect = 5.1
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 57 PKIGE-KSLFTKDLEDALMSKNVDFVVHSLKDLPTTLPDGLVIGAVFEREDPRDALVLNE 115
P+IG KSL L + N+ V+H+LK+ + + L+IG F+ E + + + +
Sbjct: 308 PRIGNLKSLLFLSLSNNAFV-NIANVIHALKN--SRKINTLIIGTNFKGETMPEDIPITD 364
Query: 116 KFKEYSLSTLPSGSVIG 132
F+ + ++PS S+ G
Sbjct: 365 GFQSLQVLSIPSCSLSG 381
Score = 29.1 bits (62), Expect = 6.7
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 223 MLAPFNHPETYCRVLAERSFLKTLGGGCSAPVGISTKLKQNDNVYKLTLTGAVWSLDGST 282
ML P P+ L R+F + + G S G + L N+ LTGA+ S G
Sbjct: 436 MLMPMLQPDKVATQLDPRAFEQPVYAGPSLTYGKNNALPAMLNLANNELTGAIPSEVGQL 495
Query: 283 KLEETLDQTFGQIRKTVKHKL 303
K L+ +F + + +L
Sbjct: 496 KSLTLLNLSFNSLSGQIPQQL 516
>07_01_0292 -
2117212-2117326,2117402-2117527,2117654-2117791,
2117904-2118323,2118421-2118591,2118701-2118880,
2118988-2119140,2119226-2119384,2119841-2120152,
2120285-2120452,2120851-2121050,2122207-2122589,
2123244-2123625
Length = 968
Score = 29.1 bits (62), Expect = 6.7
Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 238 AERSFLKTLGGGCSAPVGISTKLKQNDNVYKLTLTGAVWSLDGSTKLEETLDQTFGQIRK 297
AE + T P +K + ++N+ + + G+ K + ++ ++K
Sbjct: 686 AEAAVNTTTANSKKKPSRSRSKKQTDENLAVCDVNNSSNCSSGARKRKRSITDKNQVVQK 745
Query: 298 TVKHKLSPTEEASSKKIKTDKTVEADNEIAVLNRRITDKTGDLG 341
+K +S EA ++T T+ ADNE+A + + G+ G
Sbjct: 746 KMKGSISGDNEAV---VETVGTISADNEVATKRKTGSTSVGEEG 786
>03_03_0137 -
14759337-14759508,14759616-14759813,14759917-14760116,
14760197-14760310,14760386-14760572,14760984-14761225,
14762326-14762424,14762505-14762836,14762931-14763039
Length = 550
Score = 29.1 bits (62), Expect = 6.7
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 93 PDGLVIGAVFEREDPRDALVLNEKFKEYSLSTLPSGSVIGTSSLRRTAQLN 143
PD L+ F + ALV KE+ S L +G+++GT+ + RT +N
Sbjct: 239 PDFLLRTVPFLMHNQNVALVQARSQKEHGDSLLNTGTLLGTAGVWRTEAIN 289
>07_01_0148 - 1080134-1080562
Length = 142
Score = 28.7 bits (61), Expect = 8.9
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 272 TGAVWSLDGSTKLEETLDQTFGQIRKTVKHK---LSPTEEASSKKIKTDKTVEADNEIAV 328
TG +W + K+E T F +I++TV + + TE+ KKI KT E ++V
Sbjct: 53 TGFMWLVQKKKKIEHT----FKKIKQTVSYANEVTAFTEKGKLKKITGVKTKELLLWLSV 108
Query: 329 LNRRITDKTGD 339
+ ITD + D
Sbjct: 109 VEVYITDASPD 119
>05_01_0038 +
260080-260380,260852-261022,261764-261810,262266-262412,
262495-262569,262826-262935,263032-263159,263368-263429,
263599-263748,263827-263861,264083-264151,264538-264629,
264718-264794,265434-265532
Length = 520
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 113 LNEKFKEYSLSTLPSGSVIGTSSLRRTAQLNGNYPQLKVVDVRGNL 158
+ EK K + T S S +G SS+ +L P L+ +D+ GNL
Sbjct: 123 VEEKLKNLNDLTSASVSYMGVSSIGPGDELKNLVPNLRQLDLTGNL 168
>02_02_0549 + 11410129-11412180
Length = 683
Score = 28.7 bits (61), Expect = 8.9
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 142 LNGNYPQLKVVDVRGNLNTRLRKLDDEDGKYSDLILAS 179
+N N+ + + D+ N + DD+DG++ D+ L S
Sbjct: 166 INNNHVGININDLASRDNDKAGYYDDDDGRFHDMTLIS 203
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,350,693
Number of Sequences: 37544
Number of extensions: 478977
Number of successful extensions: 1212
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1202
Number of HSP's gapped (non-prelim): 14
length of query: 407
length of database: 14,793,348
effective HSP length: 84
effective length of query: 323
effective length of database: 11,639,652
effective search space: 3759607596
effective search space used: 3759607596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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