Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000119-TA|BGIBMGA000119-PA|IPR000860|Porphobilinogen
deaminase
(407 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47840| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 5e-15
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 31 1.3
SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064) 31 2.2
SB_26882| Best HMM Match : MCPsignal (HMM E-Value=0.00063) 31 2.2
SB_4316| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
>SB_47840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 79.4 bits (187), Expect = 5e-15
Identities = 57/133 (42%), Positives = 68/133 (51%), Gaps = 29/133 (21%)
Query: 129 SVIGTSSLRRTAQLNGNYPQLKVVDV---------------RGNLNTRLRKLDDEDGKYS 173
S IGTSSLRR AQL N+P LK + RGNLNTRLRKLD+ D KY
Sbjct: 18 SNIGTSSLRRVAQLKRNFPHLKFESIVSYCMSITAFVPTCKRGNLNTRLRKLDEGD-KYD 76
Query: 174 DLILASAGLSRMGWGNRMSKVLPCSEMLYAVGQGALAVECRADNEEVLAMLAPFNHPETY 233
++LA AGL RMGW R QGALAVE + + +++ T
Sbjct: 77 AIVLAKAGLDRMGWEER-------------TDQGALAVELNVSDLKTFELISQLFDFNTT 123
Query: 234 CRVLAERSFLKTL 246
R ERSFL+TL
Sbjct: 124 VRCATERSFLRTL 136
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 31.5 bits (68), Expect = 1.3
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 284 LEETLDQTFGQIRKTVKHKLSPTEEASSKKIKT--DKTVEADNEIAVLNRRITDKTGDL 340
L+ + + G++ K K+ L +E KK+ + ++ E ++E++VLN+ T+KTG++
Sbjct: 1170 LKSAVSISEGELLK-FKNTLQSEKEEFEKKLSSLLEQLSEMESEVSVLNKSCTEKTGEV 1227
>SB_28079| Best HMM Match : MCPsignal (HMM E-Value=0.00064)
Length = 257
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 286 ETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKTVEADNEIAVLNRRITDKTGDL 340
E D T G+I KT + T+E + + TDK + EI +ITD+TG +
Sbjct: 78 ELTDST-GEITKTKDEIIDSTDEITDR---TDKITDRTGEITDRTDKITDRTGKI 128
>SB_26882| Best HMM Match : MCPsignal (HMM E-Value=0.00063)
Length = 217
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 286 ETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKTVEADNEIAVLNRRITDKTGDL 340
E D T G+I KT + T+E + + TDK + EI +ITD+TG +
Sbjct: 59 ELTDST-GEITKTKDEIIDSTDEITDR---TDKITDRTGEITDRTDKITDRTGKI 109
>SB_4316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 30.7 bits (66), Expect = 2.2
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 269 LTLTGAVWSLDGSTKLEETL 288
LTLTGAV SLDGS ++ET+
Sbjct: 1 LTLTGAVLSLDGSECIQETM 20
>SB_4908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1014
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 273 GAVWSLDGSTKLEETLDQTFGQIRKTVKHKLSPTEEASS---KKI--KTDKTVEADNEIA 327
G V+SL G ++E+ + + ++ T+K K SP EE + KK+ KT K +A + A
Sbjct: 585 GNVYSLKGEHEIEDAVYEEGILLKPTMKVKASPQEEKNETGVKKVHKKTGKAAKASKKQA 644
Query: 328 VLNR 331
+++
Sbjct: 645 KMDK 648
>SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.9 bits (64), Expect = 3.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 272 TGAVWSLDGSTKLEETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKTVEADNEIAVLNR 331
TG +DG KL+E L + +K K KLS +E+ + +K N+ NR
Sbjct: 19 TGPPLEVDGIDKLDEDLQGASKEQQKHPKEKLSNSEKQLPRLVKIFHRYLLRNKARKTNR 78
Query: 332 RITDKT 337
++ T
Sbjct: 79 KLNSLT 84
>SB_318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 29.5 bits (63), Expect = 5.1
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 279 DGSTKLEETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKTVEADNEIAVLNRRITDK 336
D + L LD T +RKT + PTE SS++ +++A + + D+
Sbjct: 992 DSDSVLSRRLDHTKPPLRKTTSNDSKPTEPDSSRRTYRAASMDASTTAGSTGKGLRDR 1049
>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1748
Score = 29.5 bits (63), Expect = 5.1
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 285 EETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKTVEADNEIAVL 329
E+ D+TF I K VKH L P +S + + + NE ++
Sbjct: 65 EKPADKTFEFIAKAVKHHLKPKLSEASASLYFNSRIRRSNESVMM 109
>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1829
Score = 29.1 bits (62), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 284 LEETLDQTFGQIRKTVKHKLSPTEEASSKKIKTDKTVEADNEIAVL 329
LE+ D+TF I K VKH P + + + + NE V+
Sbjct: 648 LEKPADKTFEFITKAVKHHFKPKLSEAGASLYFNSRIRRSNESVVM 693
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.134 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,302
Number of Sequences: 59808
Number of extensions: 552202
Number of successful extensions: 1517
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 19
length of query: 407
length of database: 16,821,457
effective HSP length: 84
effective length of query: 323
effective length of database: 11,797,585
effective search space: 3810619955
effective search space used: 3810619955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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