GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000119-TA|BGIBMGA000119-PA|IPR000860|Porphobilinogen
deaminase
         (407 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical pr...    32   0.64 
Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   5.9  
AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical ...    29   7.9  

>Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical
           protein C17D12.7 protein.
          Length = 657

 Score = 32.3 bits (70), Expect = 0.64
 Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 57  PKIGEKSLFTKDL-EDALMSKNVDFVVHSLKDLPTTLPDGLVIGAVFEREDPRDALVLNE 115
           PK G   LFT+ + E+  +S++    ++S ++ P      + I   F+ ED  D  ++ +
Sbjct: 254 PKCGNFDLFTRKVPENIRLSESQLVELYSNRE-PRNSKSDITIRQFFDEEDDADKTIVEQ 312

Query: 116 KFKEYSLSTLPSGSVIGTSSLRRTAQLN 143
            FK+Y  S      ++  S+   +  L+
Sbjct: 313 VFKDYHRSLEKETPIMRNSATDTSGSLH 340


>Z81564-3|CAB04577.1|  536|Caenorhabditis elegans Hypothetical
           protein K05C4.3 protein.
          Length = 536

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 149 LKVVDVRGNLNTRLRKLDDEDGKYSDLILASAGLSRMGWGNRMSKVLPCSEML 201
           +K +++ G LN  L K      K   L + SAGL   GW  ++S +LP  + L
Sbjct: 106 IKRINIVGILNDILNK--GSQTKLKHLEIRSAGLVSYGWSTKISDMLPSLKSL 156


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 150 KVVDVRGNLNTRLRKLDDEDGKYSDLI 176
           K+VD+ G LN   RK +D+D + S+L+
Sbjct: 491 KLVDMEGQLNDAHRKAEDKDVRISELL 517


>AF016435-6|AAB65882.1|  213|Caenorhabditis elegans Hypothetical
           protein F59D6.7 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 11  VGSRKSELALVQTNFVIDSLKRNY-PEKEFKIVTMTTLGDRVLDQPLPKIGEKSLFTKD 68
           + SRK +L      +  D  K NY   +EFK++  + +G  +    L KI +K+L   D
Sbjct: 126 LNSRKDKLRFAFKMY--DLNKNNYITREEFKVILNSMVGANITSDQLDKIADKTLEEAD 182


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,695,832
Number of Sequences: 27539
Number of extensions: 418334
Number of successful extensions: 1087
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 5
length of query: 407
length of database: 12,573,161
effective HSP length: 83
effective length of query: 324
effective length of database: 10,287,424
effective search space: 3333125376
effective search space used: 3333125376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)