GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000119-TA|BGIBMGA000119-PA|IPR000860|Porphobilinogen
deaminase
         (407 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.5  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.2  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 363 NMPIDVVIKCDNLGRDLANSLIDKG 387
           N+ IDVV+  + L     N L+D+G
Sbjct: 30  NVDIDVVLNTERLLNAYVNCLLDQG 54


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 363 NMPIDVVIKCDNLGRDLANSLIDKG 387
           N+ IDVV+  + L     N L+D+G
Sbjct: 30  NVDIDVVLNTERLLNAYVNCLLDQG 54


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 8.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 130 VIGTSSLRRTAQLNGNYPQLKVVDVRGN 157
           +I T+ L      N NY +L  +D+R N
Sbjct: 7   IITTTGLENWRVNNSNYTELLPIDMRFN 34


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,520
Number of Sequences: 429
Number of extensions: 4846
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 407
length of database: 140,377
effective HSP length: 59
effective length of query: 348
effective length of database: 115,066
effective search space: 40042968
effective search space used: 40042968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)