GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000118-TA|BGIBMGA000118-PA|IPR000719|Protein kinase,
IPR011009|Protein kinase-like, IPR008271|Serine/threonine protein
kinase, active site, IPR002290|Serine/threonine protein kinase
         (900 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       27   0.75 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   7.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 329 FGNKNLIRTTKEFRETKKNNNARLKAGSNCNEADEIYQEAVL 370
           F N  +++   +  E+  NNN   + G++C   +  + +AVL
Sbjct: 444 FSNVEVVQEEAKKEESDSNNNNNKEEGNSCQYCNIAFGDAVL 485


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query: 251 DDEDFKISYRSPNQSDEESDRKLTTVKNKLRKILSDRD 288
           DD+D  +S     + DEE  R  T +  +++   + +D
Sbjct: 158 DDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKD 195


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,087
Number of Sequences: 317
Number of extensions: 9011
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 900
length of database: 114,650
effective HSP length: 63
effective length of query: 837
effective length of database: 94,679
effective search space: 79246323
effective search space used: 79246323
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)