GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000117-TA|BGIBMGA000117-PA|undefined
         (1329 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    28   0.37 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   6.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   6.0  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   6.0  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   6.0  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   8.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           24   8.0  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 15/80 (18%), Positives = 33/80 (41%)

Query: 754 PDDLKVSRSSYANSLERPKSEMMKKLLAKNPILNVHIDQSTQREASTSAEVQTPMTDASK 813
           PDD+ + +   +    +P   +       +PIL+    ++ + +A+++    TP+   + 
Sbjct: 107 PDDVFIRKFETSFESGKPSGVISTNTSPPSPILSNRFGENEEADAASNVISSTPLPPTTS 166

Query: 814 SAMHQPDIVNFDLKPSEMKT 833
           +         F  KPS   T
Sbjct: 167 TTTRTTLTTKFTTKPSTKPT 186



 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 1244 SVSPPQKPVLLAKPSSIPVKAT 1265
            S  P  KPV++ KP   P  AT
Sbjct: 182  STKPTNKPVVVTKPPQAPPFAT 203


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 187 PNVPDDGVLRQKSVENGSATVEKRSVDEIDKPEPPRPAPTVQIKHENETEHKKPVVAKRR 246
           PN         K  ++ S+T      D      PPR  P +     +       + +   
Sbjct: 89  PNTQTHPSASCKYADSTSSTGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSGLTSPLS 148

Query: 247 EKMAPPIPNARVKTNETESISHETTVSDASQASFARNDLNSSGIKRDENGIPQEI 301
              +PP   A   T++  S    +T S +S      N+ NS   K  ++  P +I
Sbjct: 149 VSTSPPGKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNS---KSSQSSNPPQI 200


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 404 DSGTDTSGRASATRINTSTPKVNKTKSTSSTRLEDSINC-SQDDIDDIVSKPFKRESDSL 462
           DS T   G+           +++K KS     +  +  C S D+I DI S        + 
Sbjct: 75  DSITSDGGKNGKLSDKFLDDEMSK-KSCQGCEMPSAGLCGSHDEIPDISST-----RGNN 128

Query: 463 NNFFEDSKSNLSSNQDVHSVVSLNQSDKSERGSTTIELNNSDITIHSSPLNATVQSGSGD 522
           NN    + +N + N + +   S+  S   ++       +N D ++H SP    +   +  
Sbjct: 129 NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSP---RITKKANS 185

Query: 523 TSLLDENERKA 533
            S+  EN R +
Sbjct: 186 VSVKVENRRNS 196


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 404 DSGTDTSGRASATRINTSTPKVNKTKSTSSTRLEDSINC-SQDDIDDIVSKPFKRESDSL 462
           DS T   G+           +++K KS     +  +  C S D+I DI S        + 
Sbjct: 23  DSITSDGGKNGKLSDKFLDDEMSK-KSCQGCEMPSAGLCGSHDEIPDISST-----RGNN 76

Query: 463 NNFFEDSKSNLSSNQDVHSVVSLNQSDKSERGSTTIELNNSDITIHSSPLNATVQSGSGD 522
           NN    + +N + N + +   S+  S   ++       +N D ++H SP    +   +  
Sbjct: 77  NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSP---RITKKANS 133

Query: 523 TSLLDENERKA 533
            S+  EN R +
Sbjct: 134 VSVKVENRRNS 144


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 10/131 (7%)

Query: 404 DSGTDTSGRASATRINTSTPKVNKTKSTSSTRLEDSINC-SQDDIDDIVSKPFKRESDSL 462
           DS T   G+           +++K KS     +  +  C S D+I DI S        + 
Sbjct: 206 DSITSDGGKNGKLSDKFLDDEMSK-KSCQGCEMPSAGLCGSHDEIPDISST-----RGNN 259

Query: 463 NNFFEDSKSNLSSNQDVHSVVSLNQSDKSERGSTTIELNNSDITIHSSPLNATVQSGSGD 522
           NN    + +N + N + +   S+  S   ++       +N D ++H SP    +   +  
Sbjct: 260 NNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSP---RITKKANS 316

Query: 523 TSLLDENERKA 533
            S+  EN R +
Sbjct: 317 VSVKVENRRNS 327


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 282 RNDLNSSGIKRDENGIPQEIPQQM-LDAAK--AARTNRKSSVEILNEKERQDNRKERKSS 338
           RN++ SS +K  +N +     +   +D A   +A + +K  V+I  + +++D R E  SS
Sbjct: 337 RNEVISSALKLSQNELEITACKFFSIDNALLFSANSTKKLIVKIRIDIDKEDERNEIISS 396

Query: 339 AETLHDKE 346
           A  L   E
Sbjct: 397 ALKLSQSE 404


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)

Query: 1171 SNERYHSARQMAEAKKTKTTASDPKKRHSDYDL-PRNSH-IKFRTATYES-PKGTIVTST 1227
            +NE YHS ++    +  + + + P   H D  + P  +H      + Y++  +G    + 
Sbjct: 42   NNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVTPMVNHDFTQHLSQYDTCQQGIYPENK 101

Query: 1228 DLENRRLSELDQMQL--RSVSPPQKPVLLAKPSS 1259
             L N    +LD+ +L  +    P    LL +P +
Sbjct: 102  TLINETSLQLDENKLDKKDDDSPALRALLTRPQA 135


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.124    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,759
Number of Sequences: 317
Number of extensions: 11822
Number of successful extensions: 52
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 10
length of query: 1329
length of database: 114,650
effective HSP length: 65
effective length of query: 1264
effective length of database: 94,045
effective search space: 118872880
effective search space used: 118872880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 49 (23.8 bits)