GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000117-TA|BGIBMGA000117-PA|undefined
         (1329 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    26   1.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    24   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   7.2  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    24   7.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   7.2  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    24   7.2  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
            determiner protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 13/88 (14%)

Query: 1153 REPVLSYELDIELLSNFISNERYHSARQMAEAKKTKTTASDPKKRHSDYDLPRNSHIKFR 1212
            R+ +L YEL       +I     H  + + E  KTK+ + + + R +  +  +   +  +
Sbjct: 58   RKMILEYEL-------YIKYSHTHEKKLVLERSKTKSKSPESRDRSNTSNTSKTFILSDK 110

Query: 1213 ------TATYESPKGTIVTSTDLENRRL 1234
                  T+ +  PKG  + +T+L+  +L
Sbjct: 111  LESSDDTSLFRGPKGIQINATELQKIKL 138



 Score = 24.2 bits (50), Expect = 7.2
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 1114 KLESHDDAHVTEIEVVATRADRNAKGKP---DKVSGRQRVPYR---EPVLSYELDIELLS 1167
            K++ HD   V  IE     + + A       ++  G Q    R   E   S + + E   
Sbjct: 193  KIKEHDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQHTSSRYSRERSCSRDRNREYRK 252

Query: 1168 NFISNERYHSARQ-MAEAKKTKTTASDPKKRHSDYDLPRNSHIKFRTATYESPKGTIVTS 1226
                 E+ H+ ++ + E + ++   S  ++R        NS+ K+R  + E  +      
Sbjct: 253  KDRRYEKLHNEKEKLLEERTSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDKTERE 312

Query: 1227 TDLENRRLSELDQMQLRSVS 1246
               E + +S L    + ++S
Sbjct: 313  RSKERKIISSLSNNYISNIS 332


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 280 FARNDLNSSGIKRDENGIPQEIPQQMLDAAKAARTNRKSSVEILNEK 326
           F+R D+ +  I R  +  P   PQ+++   +  R +R +++ ++NE+
Sbjct: 108 FSRQDIET--IIRRNSRYPLRPPQEVISHYRRTRRDRYTNLGLVNEQ 152


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
            receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 1115 LESHDDAHVTEIEVVATRADRNAKGKPDKVSGRQRVPYREPV 1156
            L+S D+ H  E+E V   +     G P   +   ++P  E V
Sbjct: 422  LDSRDELHPRELEAVNLGSACRIHGSPATTAAPPQLPTEESV 463


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 37/172 (21%), Positives = 66/172 (38%), Gaps = 6/172 (3%)

Query: 381 ILE-RLQRVKDFLKSEKYHSSLLNDSGTDTSGRASATRINTSTPKVNKTKSTSSTRLEDS 439
           ILE  L+R ++   S++  S      G   +   S T I +   K+  +  TS  R  + 
Sbjct: 60  ILEYELRRAREKKLSKRSKSRSPESRGRSNASNTSKTFILSE--KLESSDGTSLFRGPEG 117

Query: 440 INCSQDDIDDIVSKPFKRESDSLNNFFEDSKSNLSSNQDVHSVVSLNQSDKS--ERGSTT 497
              S  ++  I     +          ++ K  + + +DV       +  K   ER    
Sbjct: 118 TQVSATELRKIKVDIHRVLPGKPTTTSDELKRGIINPEDVMLKRRTGEGSKPIFEREEIK 177

Query: 498 IELNNS-DITIHSSPLNATVQSGSGDTSLLDENERKAASLGDLSRFDLRTNA 548
             LN + +IT H + L   ++    +T    +    + SLG  SR   RT++
Sbjct: 178 NILNKTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLGSRSRSFQRTSS 229


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 726 PTQPNLTKLETTPTKYDEKITMNYDTNIPDDLKVSRSSYANS 767
           P  P   +  T   K D+K     + N  D+   S+S+ +NS
Sbjct: 111 PASPGYVQPPTKHQKLDQKFIFPQENNYNDNYFYSKSNGSNS 152


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 215 IDKPEPPRPAPTVQIKHENETEHKKPVVAKRREKMAPPIPNAR 257
           I +P PP P    + K E E  + +PV   +     PP P  R
Sbjct: 133 IPQPRPPHPRLRREAKPEAEPGNNRPVYIPQPR---PPHPRLR 172


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.306    0.124    0.334 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 362,156
Number of Sequences: 429
Number of extensions: 16376
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 13
length of query: 1329
length of database: 140,377
effective HSP length: 66
effective length of query: 1263
effective length of database: 112,063
effective search space: 141535569
effective search space used: 141535569
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 49 (23.8 bits)