Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   1.6  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    19   3.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     19   6.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   6.6  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    19   6.6  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    19   6.6  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    19   6.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    19   6.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   6.6  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    19   6.6  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       19   6.6  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       18   8.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    18   8.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    18   8.7  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    18   8.7  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 5   NRKRKHLVFS-TDPESVKDEFAFDNPGFKQDERWQHDATLPVGG 47
           N    H + S  DP+ +    AF    F   +  QHD   P  G
Sbjct: 234 NSSITHWILSGADPQKLAIGIAFYGHAFTLVDASQHDLGSPSSG 277


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 19.4 bits (38), Expect = 3.8
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 9   KHLVFSTDPESVKDEFAFDNP 29
           KHL    DP   K  +AF  P
Sbjct: 349 KHLRKVGDPSKRKGTYAFRTP 369


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed
          protein.
          Length = 283

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 28 NPGFKQDERWQHDATLPVGG 47
          +P F   E +  ++ +P GG
Sbjct: 28 DPKFPPSEEYNQNSYIPPGG 47


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription
          factor Deformed protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 28 NPGFKQDERWQHDATLPVGG 47
          +P F   E +  ++ +P GG
Sbjct: 28 DPKFPPSEEYNQNSYIPPGG 47


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
          peptide isoform C protein.
          Length = 136

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 37 WQHDATLPVGGKPSVLHAEFTK 58
          +Q   + P G  P+ L   FTK
Sbjct: 24 FQEITSSPAGRSPAFLPHHFTK 45


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
          peptide isoform B protein.
          Length = 120

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 37 WQHDATLPVGGKPSVLHAEFTK 58
          +Q   + P G  P+ L   FTK
Sbjct: 24 FQEITSSPAGRSPAFLPHHFTK 45


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
          peptide isoform A protein.
          Length = 140

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 37 WQHDATLPVGGKPSVLHAEFTK 58
          +Q   + P G  P+ L   FTK
Sbjct: 24 FQEITSSPAGRSPAFLPHHFTK 45


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
          protein.
          Length = 311

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 40 DATLPVGGKPSVLHAEFTKPEQSKDD 65
          D  L V G P  L      PE+  ++
Sbjct: 52 DCDLDVTGTPPPLDCSKNSPEKESEE 77


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 28 NPGFKQDERWQHDATLPVGG 47
          +P F   E +  ++ +P GG
Sbjct: 28 DPKFPPSEEYNQNSYIPPGG 47


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
          transcription factor TcDfd1 protein.
          Length = 126

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 28 NPGFKQDERWQHDATLPVGG 47
          +P F   E +  ++ +P GG
Sbjct: 28 DPKFPPSEEYNQNSYIPPGG 47


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 27  DNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQS 62
           ++PGF  +  W+     P    P  L   + KPEQ+
Sbjct: 121 ESPGFTTERNWE-IREKPY--TPPRLPTVYGKPEQN 153


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 7   KRKHLVFSTDPESVKDE 23
           +RK   F  DP  V+ E
Sbjct: 417 RRKGPAFKVDPTQVESE 433


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B
          protein.
          Length = 712

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 26 FDNPGFKQDERWQHDATLPVGGKP 49
          FDN  F Q E         +GG P
Sbjct: 49 FDNSDFFQSEHAVIQTHPSIGGGP 72


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A
          protein.
          Length = 717

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 26 FDNPGFKQDERWQHDATLPVGGKP 49
          FDN  F Q E         +GG P
Sbjct: 49 FDNSDFFQSEHAVIQTHPSIGGGP 72


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 16  DPESVKDEFAFDNPGFKQDERWQHDATLPV 45
           DP  +    AF    F+  +  QHD   PV
Sbjct: 249 DPGKLTIGLAFYGHTFQLADPAQHDLGAPV 278


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,340
Number of Sequences: 317
Number of extensions: 763
Number of successful extensions: 15
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 71
length of database: 114,650
effective HSP length: 45
effective length of query: 26
effective length of database: 100,385
effective search space:  2610010
effective search space used:  2610010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)