Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putat...    27   1.2  
At2g45240.1 68415.m05632 methionyl aminopeptidase, putative / me...    26   2.7  
At1g11060.1 68414.m01267 expressed protein                             26   2.7  
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei...    26   3.5  
At1g72770.1 68414.m08414 protein phosphatase 2C P2C-HA / PP2C P2...    26   3.5  
At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putat...    25   4.7  

>At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 486

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 23  EFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDTFLQV 70
           E+ FD+P     E+  H A     G+P  +     K  Q + DTF QV
Sbjct: 113 EYNFDHPDAFDTEQLLHCAETLKSGQPYQVPIYDFKTHQRRSDTFRQV 160


>At2g45240.1 68415.m05632 methionyl aminopeptidase, putative /
           methionine aminopeptidase, putative / peptidase M,
           putative similar to SP|Q01662 Methionine aminopeptidase
           1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae};
           contains Pfam profile PF00557: metallopeptidase family
           M24
          Length = 398

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 28  NPGFKQDE--RWQHDATLPVGGKPSVLHAEF 56
           +PG   DE  R  H+AT+  GG PS L+  F
Sbjct: 169 HPGVTTDEIDRVVHEATIAAGGYPSPLNYYF 199


>At1g11060.1 68414.m01267 expressed protein 
          Length = 930

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 17  PESVKDEFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDTFLQV 70
           PE  +D FAFD   +K   +W   A + V  K S    +    +QSKD++  Q+
Sbjct: 607 PEESEDPFAFDLEDYK-PSKW---AVVSVNQKKSRAQKKKGCYKQSKDESLYQL 656


>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
           (PRHA) identical to Pathogenesis-related homeodomain
           protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
          Length = 796

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 31  FKQDERWQ----HDATLPVGGKPSVLHAEFTKPEQSKDDTF 67
           F  D  WQ     +A+LP+G + +V +      + SKDD +
Sbjct: 262 FPVDSNWQDIFNEEASLPIGSEATVNNEADWPSDDSKDDDY 302


>At1g72770.1 68414.m08414 protein phosphatase 2C P2C-HA / PP2C
           P2C-HA (P2C-HA) identical to protein phosphatase 2C
           (AtP2C-HA) GB:AJ003119 [Arabidopsis thaliana] (Plant
           Mol. Biol. 38 (5), 879-883 (1998))
          Length = 511

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 1   MASFNRKRKHLVFSTDPESVKDEFAFDNPGFKQDERW 37
           +A + R R H   + + E +KDE    N G  +  +W
Sbjct: 250 VADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQW 286


>At3g27190.1 68416.m03400 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 483

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 23  EFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDTFLQV 70
           E+ FD+P     E+  H   +   G+P  +     K  Q K D F QV
Sbjct: 113 EYNFDHPDAFDTEQLLHCVDILKSGQPYQIPIYDFKTHQRKVDAFRQV 160


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,251
Number of Sequences: 28952
Number of extensions: 76493
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 6
length of query: 71
length of database: 12,070,560
effective HSP length: 51
effective length of query: 20
effective length of database: 10,594,008
effective search space: 211880160
effective search space used: 211880160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)