GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   0.70 
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    24   2.8  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    23   3.7  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    23   4.9  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    23   6.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    23   6.5  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    23   6.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    22   8.6  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    22   8.6  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 38  QHDATLPVGGKPSVLHAEFTKPEQSKDDTFLQV 70
           Q++  L V    ++ H+E+ +P +SK++  LQ+
Sbjct: 577 QYENKLTVSQFTAMQHSEYEEPIESKEELLLQI 609


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 4   FNRKRKHLVFSTDPESVKDEFAFDNPGFKQDE 35
           FNRK   L   TD +S+  E   DN   K++E
Sbjct: 117 FNRKSAQLENETDTKSLPVEANNDNSARKKNE 148


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 5   NRKRKHLVFSTDPESVKDEFAFDNPGFKQDERWQHDATLPV 45
           N + K  +++  P   K+EF  ++P FK      HD  L +
Sbjct: 100 NYEEKEHIYTALPLVSKEEFLKEHPEFKSSN--DHDLMLAI 138


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 17  PESVKDEFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTK 58
           PE+VK   A  +   K  E + H+  + + G  S+++  FT+
Sbjct: 325 PEAVKRLNALGDGLRKDIESYCHNTKMSITGLGSIMNIHFTE 366


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 5   NRKRKHLVFSTDPESVKDEFAFDNPGFKQDE 35
           N+K KH     D ES +D+ A   PG  + +
Sbjct: 314 NKKEKHYFSDGDSESSEDDLA--QPGIMKPD 342


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 4   FNRKRKHLVFSTDPESVKDEFAFDNPGFKQDERW 37
           F  K     F   P+ +  E    NPG K  + W
Sbjct: 848 FENKDPSKRFIGTPDYIAPEVILGNPGIKASDWW 881


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 34 DERWQHDATLPVGGKPSVLHAEFTKPEQSKDD 65
          DE    DA      KPS L  E   P+ +K D
Sbjct: 2  DESLAKDAVFVASSKPSDLTTEVVGPDFNKYD 33


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 15  TDPESVKDEFAFDNPGFKQDERWQHDA 41
           T P S++D+ AF NP    D + +  A
Sbjct: 615 TIPRSMRDDPAFQNPHGSLDNKEEEAA 641


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 22  DEFAFDNPGFKQDERWQHDATLP 44
           D+  F+N G +  E +  D T+P
Sbjct: 239 DKKTFENVGIRHKEMYFEDGTVP 261


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 395,514
Number of Sequences: 5004
Number of extensions: 14753
Number of successful extensions: 33
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 2,362,478
effective HSP length: 51
effective length of query: 20
effective length of database: 2,107,274
effective search space: 42145480
effective search space used: 42145480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)