GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    27   2.4  
06_03_0943 - 26191798-26192244,26192802-26192966,26193515-261936...    26   4.3  
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163...    25   5.7  
10_01_0199 + 2164555-2165775                                           25   7.5  
11_06_0313 + 22306497-22308938                                         25   9.9  
11_01_0368 + 2800597-2801037,2802282-2802314,2802789-2802876,280...    25   9.9  
10_06_0081 - 10449655-10450140,10450249-10450430,10450703-10450709     25   9.9  
10_01_0201 + 2175660-2176892                                           25   9.9  

>05_01_0471 -
           3751497-3751522,3751760-3751800,3752466-3752507,
           3753249-3753310,3753398-3753584,3753692-3753826,
           3753872-3753948,3754005-3754076,3754389-3754588,
           3754675-3755020,3755463-3755519,3755655-3757433,
           3757539-3757720,3757943-3758072
          Length = 1111

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 17  PESVKDEFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQ 61
           PE  +D+ +F  P     E  Q +A+LP  G+    +A    PEQ
Sbjct: 536 PEETQDDASFSCPEQHVPEETQANASLPCPGQHVPDNASLPCPEQ 580


>06_03_0943 -
           26191798-26192244,26192802-26192966,26193515-26193668,
           26194153-26194346,26194494-26194695,26194899-26195103,
           26195672-26195843
          Length = 512

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 23  EFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDTFLQVR 71
           +F+F+ PG+K   +  H + L     P +   +F   EQ   DT   V+
Sbjct: 283 DFSFETPGYKSSTKEHHLSYLSY-APPELSFDKFQADEQGWLDTIKSVK 330


>03_01_0207 -
           1633177-1633372,1633623-1633688,1633778-1633859,
           1633942-1634037,1634413-1634518,1634602-1634661,
           1635114-1635234,1635929-1636040,1636118-1636217,
           1636328-1636382,1636489-1636595,1636798-1636850,
           1636989-1637114,1637909-1638065,1638226-1638421,
           1638917-1639073,1639139-1639379,1639475-1639605,
           1639704-1639826,1639929-1639984,1640610-1640767,
           1640847-1640984,1641070-1641123
          Length = 896

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 1   MASFNRKR-KHL-VFSTDPESVKDEFAFDNPGFKQDE 35
           +A+ NR+  +H+ VFS DP  + D   F +PG   DE
Sbjct: 451 LANPNRQDLRHVRVFSVDPPDIADVTNFVHPGTPLDE 487


>10_01_0199 + 2164555-2165775
          Length = 406

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 7/12 (58%), Positives = 11/12 (91%)

Query: 34  DERWQHDATLPV 45
           DE+W+HD T+P+
Sbjct: 314 DEQWRHDKTIPL 325


>11_06_0313 + 22306497-22308938
          Length = 813

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 21  KDEFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQ 61
           +D++ F+ P  +Q+ RW +   L   G+PS+  +  T P+Q
Sbjct: 683 EDDYIFETPSSEQNLRWNYAPELL--GEPSLSDSSET-PKQ 720


>11_01_0368 +
           2800597-2801037,2802282-2802314,2802789-2802876,
           2802984-2803465,2803552-2803818,2803955-2804304,
           2804396-2804945
          Length = 736

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 5   NRKRKHLVFSTDPESVKDEFAFDNPGFKQDER 36
           ++++ HL +++ P S    F+ DN G + D R
Sbjct: 199 SKRKDHLAYNSFPASEPSAFSNDNAGDELDLR 230


>10_06_0081 - 10449655-10450140,10450249-10450430,10450703-10450709
          Length = 224

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 32  KQDERWQHDATLPVGGKPSV 51
           K+D+ W HD TL  G   ++
Sbjct: 134 KEDDSWVHDLTLDAGSSITI 153


>10_01_0201 + 2175660-2176892
          Length = 410

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 34  DERWQHDATLPV 45
           DE W+HD T+P+
Sbjct: 319 DEHWRHDKTIPL 330


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,910
Number of Sequences: 37544
Number of extensions: 90833
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 14,793,348
effective HSP length: 51
effective length of query: 20
effective length of database: 12,878,604
effective search space: 257572080
effective search space used: 257572080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)