GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.6  
SB_45602| Best HMM Match : Ribosomal_S30AE (HMM E-Value=8)             26   3.6  
SB_56229| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  
SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               25   6.4  
SB_8658| Best HMM Match : SCP (HMM E-Value=3e-20)                      25   6.4  
SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)                    25   6.4  
SB_24969| Best HMM Match : DUF645 (HMM E-Value=1.8)                    25   8.4  

>SB_49859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 2   ASFNRKRKHLVFSTDPESVKDEF--AFDNPGFKQD--ERW--QHDATLPVGG---KPSVL 52
           A  +  R    FS  PE++KDE+    D  G +QD    W  Q D    + G   KP   
Sbjct: 105 AGHDASRGLATFSLGPEAIKDEYDDLSDLNGMQQDSLREWEQQFDEKYDLVGRLLKPGEK 164

Query: 53  HAEFTKPEQSKDD 65
           H ++   E+++++
Sbjct: 165 HQQYETEEETEEE 177


>SB_45602| Best HMM Match : Ribosomal_S30AE (HMM E-Value=8)
          Length = 340

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 17  PESVKDEFAFDNPGFKQDERWQHDATLPVGGKPS 50
           P S  +     NPGF  DE      TL + G+P+
Sbjct: 210 PSSSDESNGIANPGFVSDESDDVAVTLEINGQPA 243


>SB_56229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/50 (30%), Positives = 20/50 (40%)

Query: 14  STDPESVKDEFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQSK 63
           S +P     EF   NP      +  H ATL      +    +  KPE+SK
Sbjct: 95  SPEPTVPDQEFTHSNPTVHSAVKQSHIATLSTPVSCAETQTQQPKPEKSK 144


>SB_50931| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 348

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 4  FNRKRKHLVFSTDPESVKDEFAFDNPGFKQDERWQHD-ATLPVGGKPSVLHAEFTKPEQS 62
          +N+K K ++F+  PE  K +  FD    KQ  R   + +T   G  P+      TKP+ S
Sbjct: 30 WNKKAKGILFNKTPEKEKAKMKFDVR--KQKSRTSSESSTNSTGAIPA------TKPDNS 81

Query: 63 K 63
          K
Sbjct: 82 K 82


>SB_8658| Best HMM Match : SCP (HMM E-Value=3e-20)
          Length = 273

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/11 (72%), Positives = 11/11 (100%)

Query: 24  FAFDNPGFKQD 34
           ++FDNPGFK+D
Sbjct: 134 YSFDNPGFKRD 144


>SB_19994| Best HMM Match : Pox_J1 (HMM E-Value=7.6)
          Length = 348

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 16  DPESVKDEFAFDNPGFKQDERWQHDAT 42
           DP   + +   D     QDE W HD T
Sbjct: 163 DPNKAESDPLTDVKDLSQDEEWLHDKT 189


>SB_24969| Best HMM Match : DUF645 (HMM E-Value=1.8)
          Length = 336

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/33 (36%), Positives = 13/33 (39%)

Query: 27  DNPGFKQDERWQHDATLPVGGKPSVLHAEFTKP 59
           D  GF  D  + HDA LP  G    L      P
Sbjct: 118 DCRGFSTDTEYIHDARLPAAGWRQFLSRSIAPP 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,739
Number of Sequences: 59808
Number of extensions: 101233
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 7
length of query: 71
length of database: 16,821,457
effective HSP length: 50
effective length of query: 21
effective length of database: 13,831,057
effective search space: 290452197
effective search space used: 290452197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)