GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-820|AAF58970.1|  686|Drosophila melanogaster CG8024-PB,...    26   5.6  
AY102690-1|AAM27519.1|  351|Drosophila melanogaster LD30288p pro...    25   9.7  
AE014296-2012|AAS65036.1|  351|Drosophila melanogaster CG11658-P...    25   9.7  
AE014296-2011|AAS65035.1|  351|Drosophila melanogaster CG11658-P...    25   9.7  
AE014296-2010|AAS65034.1|  351|Drosophila melanogaster CG11658-P...    25   9.7  
AE014296-2009|AAS65033.1|  351|Drosophila melanogaster CG11658-P...    25   9.7  
AE014296-2008|AAF50023.1|  351|Drosophila melanogaster CG11658-P...    25   9.7  

>AE013599-820|AAF58970.1|  686|Drosophila melanogaster CG8024-PB,
           isoform B protein.
          Length = 686

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 18  ESVKDEFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQ 61
           +SV  E++  + G + D   Q D T P   KP     + T  ++
Sbjct: 424 QSVASEYSNQDSGSEDDSEEQADTTEPENAKPMPAFGDLTMDQE 467


>AY102690-1|AAM27519.1|  351|Drosophila melanogaster LD30288p
          protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 26 FDNPG---FKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
          F +PG    K D  W+    L  GGK    H+E +   Q  D +
Sbjct: 8  FRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDSS 51


>AE014296-2012|AAS65036.1|  351|Drosophila melanogaster
          CG11658-PE, isoform E protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 26 FDNPG---FKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
          F +PG    K D  W+    L  GGK    H+E +   Q  D +
Sbjct: 8  FRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDSS 51


>AE014296-2011|AAS65035.1|  351|Drosophila melanogaster
          CG11658-PD, isoform D protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 26 FDNPG---FKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
          F +PG    K D  W+    L  GGK    H+E +   Q  D +
Sbjct: 8  FRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDSS 51


>AE014296-2010|AAS65034.1|  351|Drosophila melanogaster
          CG11658-PC, isoform C protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 26 FDNPG---FKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
          F +PG    K D  W+    L  GGK    H+E +   Q  D +
Sbjct: 8  FRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDSS 51


>AE014296-2009|AAS65033.1|  351|Drosophila melanogaster
          CG11658-PB, isoform B protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 26 FDNPG---FKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
          F +PG    K D  W+    L  GGK    H+E +   Q  D +
Sbjct: 8  FRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDSS 51


>AE014296-2008|AAF50023.1|  351|Drosophila melanogaster
          CG11658-PA, isoform A protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 26 FDNPG---FKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
          F +PG    K D  W+    L  GGK    H+E +   Q  D +
Sbjct: 8  FRSPGETWIKTDGGWERSKVLECGGKRKRHHSEGSSSYQDSDSS 51


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,197,076
Number of Sequences: 52641
Number of extensions: 157535
Number of successful extensions: 297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 7
length of query: 71
length of database: 24,830,863
effective HSP length: 51
effective length of query: 20
effective length of database: 22,146,172
effective search space: 442923440
effective search space used: 442923440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)