GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61949-2|AAB03152.1|  884|Caenorhabditis elegans Puromycin-sensi...    26   2.8  
U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensi...    26   2.8  
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z69904-10|CAA93782.2|  754|Caenorhabditis elegans Hypothetical p...    25   6.5  
Z69902-13|CAA93770.2|  754|Caenorhabditis elegans Hypothetical p...    25   6.5  
U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical pr...    25   6.5  
AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical...    25   6.5  
U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deamin...    25   8.6  
U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical pr...    25   8.6  

>U61949-2|AAB03152.1|  884|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform a
           protein.
          Length = 884

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 24  FAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
           F  D     ++ +WQ   T+ VG  PS + A F   E+ ++ T
Sbjct: 487 FISDGGEDPKNSQWQVPITVAVGSSPSDVKARFLLKEKQQEFT 529


>U61949-1|AAY44009.1|  948|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform b
           protein.
          Length = 948

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)

Query: 24  FAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDT 66
           F  D     ++ +WQ   T+ VG  PS + A F   E+ ++ T
Sbjct: 551 FISDGGEDPKNSQWQVPITVAVGSSPSDVKARFLLKEKQQEFT 593


>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
           protein T19A5.1 protein.
          Length = 1280

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 20  VKDEFAFDNPGFKQDERWQHDATLPVGG---KPSVLHAEFT 57
           +K+   FDNP F++D R Q +A +   G   +    H  FT
Sbjct: 78  IKNHENFDNPKFEEDFRRQEEACVKSRGIRLQSDSFHTSFT 118


>Z69904-10|CAA93782.2|  754|Caenorhabditis elegans Hypothetical
           protein ZK20.6 protein.
          Length = 754

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 18  ESVKDEFAFDNPGFKQDE-RWQHDATLPVGGKPS 50
           E ++ EFAF   G KQ + RW+ D     GGK S
Sbjct: 391 EDLQQEFAFQMYGRKQRQPRWK-DCVSSAGGKLS 423


>Z69902-13|CAA93770.2|  754|Caenorhabditis elegans Hypothetical
           protein ZK20.6 protein.
          Length = 754

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 18  ESVKDEFAFDNPGFKQDE-RWQHDATLPVGGKPS 50
           E ++ EFAF   G KQ + RW+ D     GGK S
Sbjct: 391 EDLQQEFAFQMYGRKQRQPRWK-DCVSSAGGKLS 423


>U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical
           protein T20H4.2 protein.
          Length = 235

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 8   RKHLVFSTDPESVKDEF---AFDNPGFKQDERWQH 39
           R+H      PE V+  F   +FD P    DE+W H
Sbjct: 176 REHCELDHTPEVVRCVFCKSSFDQPLEMNDEQWAH 210


>AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical
           protein ZK488.1 protein.
          Length = 358

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 33  QDERWQHDATLPVGGKPSVLHAEFTKPEQSKDDTF 67
           Q   W+H   + V     ++  EF+ PE  +D  F
Sbjct: 323 QKNLWEHRPKMEVAKVFKIMKIEFSHPEMFRDSGF 357


>U61949-3|AAB03151.1|  166|Caenorhabditis elegans Cytidine deaminase
           protein 2 protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)

Query: 8   RKHLVFSTDPESV---KDEFAFDNPGFKQDERWQHDATL 43
           R  L F+  PES+   + E A +  G KQD+  +H+ T+
Sbjct: 126 RALLPFAFTPESLDTFEQEKASEAKGLKQDDATEHNVTV 164


>U41033-6|AAA82378.1|  859|Caenorhabditis elegans Hypothetical
           protein K09E3.7 protein.
          Length = 859

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 16  DPESVKDEFAFDN---PGFKQDERWQHDATLPVGGKPSVLHA 54
           D +   D F   N    GF  DE  + D+T+P    PS + A
Sbjct: 398 DQKGTNDTFNSSNRKRAGFSIDELLRPDSTIPTQSTPSTIPA 439


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,140,535
Number of Sequences: 27539
Number of extensions: 81713
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 12,573,161
effective HSP length: 51
effective length of query: 20
effective length of database: 11,168,672
effective search space: 223373440
effective search space used: 223373440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)