GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000116-TA|BGIBMGA000116-PA|undefined
         (71 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   2.0  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    19   6.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    19   7.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    19   7.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 15  TDPESVKDEFAFDNPGFKQDER 36
           +D E++K +  F N     DER
Sbjct: 93  SDNENIKSQKEFPNSSSSDDER 114


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 15/63 (23%), Positives = 22/63 (34%)

Query: 1   MASFNRKRKHLVFSTDPESVKDEFAFDNPGFKQDERWQHDATLPVGGKPSVLHAEFTKPE 60
           M      R   +   DPE +KD    D   F        + T P+      L  E  +P 
Sbjct: 72  MVGLYATRSPFLLLNDPELIKDILIRDFSKFANRGLGVFERTEPLSPHLLNLEVERWRPL 131

Query: 61  QSK 63
           +S+
Sbjct: 132 RSR 134


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/16 (37%), Positives = 7/16 (43%)

Query: 29  PGFKQDERWQHDATLP 44
           P F     WQ   +LP
Sbjct: 233 PNFPSSGHWQDQMSLP 248


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 56 FTKPEQSKDDTFLQVR 71
          FTK ++ K+DT L ++
Sbjct: 17 FTKQKKVKEDTELNLQ 32


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,254
Number of Sequences: 429
Number of extensions: 802
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 71
length of database: 140,377
effective HSP length: 45
effective length of query: 26
effective length of database: 121,072
effective search space:  3147872
effective search space used:  3147872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)